Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006649

Physical Location & Seq

Genomic Coordinates Forward (+)

21034626 .. 21036773

Gene Structure 2148 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G51780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGGAGAAGATGATGCACAGAGAAACTGAGAGGCAAAGGAGACAAGAAATGGCTTCTCTTTATGCCTCTCTTCGTTCTCTTCTCCCTCTTCACTTCATCAAGGGTAAGCGTTCGACGTCAGATCAAGTCAACGAGGCGGTGAACTACATAAAGTATCTACAGAGGAAGATCAAGGAGCTAAGTGTGAGGAGAGATGATCTCATGGTACTGTCTAGAGGAAGTTTATTGGGTAGTAGTAATGGTGATTTTAAGGAAGATGTGGAGATGATAAGTGGGAAAAATCATGTGGTGGTTCGTCAGTGTTTGGTTGGTGTGGAAATCATGTTGAGTAGCCGCTGCTGCGGTGGCCAACCGCGGTTTTCGAGTGTTCTTCAAGTGCTTAGTGAATATGGTCTCTGCCTTCTTAACTCCATCTCCTCTATTGTTGATGATAGGCTAGTTTACACCATACAGGCCGAGGTCAACGATATGGCTTTGATGATTGACTTAGCAGAACTTGAAAAGAGATTAATCAGAATGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044798 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0090575 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

174

Amino Acids

19.93

Weight (kDa)

8.93

Isoelectric Point (pI)

46.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	3 - 54	1.4e-14	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006649)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25400 AT4G25400 AT4G25410 AT5G51780 AT5G51780 AT5G51790 AT5G51790 AT5G51790 AT5G51790
fragaria_vesca	FvH4_7g28600 FvH4_7g28600 FvH4_7g28600
malus_domestica	MD01G1191600.v1.1
prunus_persica	Prupe.2G286000_v2.0.a1 Prupe.2G286000_v2.0.a1
pyrus_communis	pycom01g20280 pycom07g23850
rosa_chinensis	RchiOBHm_Chr1g0376011
rosa_laevigata	RLG00000026635
rosa_multiflora	Rmu_ssc0000116.1_g000014
rosa_roxburghii	Rroxscaffold_4G00282420
rosa_rugosa	Rorug01G0393700
rosa_samantha	Rh1BG368500 Rh1CG381400 Rh1DG398400
rosa_wichuraiana	Rw1G035920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	119
AccII	CGCG	1 cut(s)	355
AciI	CCGC	5 cut(s)	137, 334, 342, 353, 355
AcoI	YGGCCR	1 cut(s)	346
AcyI	GRCGYC	1 cut(s)	116
AfaI	GTAC	1 cut(s)	207
AgsI	TTSAA	2 cut(s)	374, 500
AluBI	AGCT	1 cut(s)	178
AluI	AGCT	1 cut(s)	178
Alw26I	GTCTC	2 cut(s)	34, 398
AoxI	GGCC	2 cut(s)	346, 453
ApeKI	GCWGC	2 cut(s)	336, 339
AseI	ATTAAT	1 cut(s)	509
AsuHPI	GGTGA	2 cut(s)	151, 254
BalI	TGGCCA	1 cut(s)	348
BbvI	GCAGC	2 cut(s)	323, 326
BccI	CCATC	1 cut(s)	419
BcoDI	GTCTC	2 cut(s)	34, 398
BfaI	CTAG	2 cut(s)	213, 437
BfmI	CTRYAG	1 cut(s)	158
BisI	GCNGC	3 cut(s)	334, 337, 340
BlsI	GCNGC	3 cut(s)	335, 338, 341
BmsI	GCATC	1 cut(s)	3
BplI	GAGNNNNNCTC	2 cut(s)	183, 215
BsaHI	GRCGYC	1 cut(s)	116
BsaI	GGTCTC	1 cut(s)	398
BsaJI	CCNNGG	2 cut(s)	353, 456
BsaXI	ACNNNNNCTCC	2 cut(s)	398, 428
BseDI	CCNNGG	2 cut(s)	353, 456
BseMII	CTCAG	1 cut(s)	18
BseRI	GAGGAG	2 cut(s)	202, 406
BseXI	GCAGC	2 cut(s)	323, 326
Bsh1236I	CGCG	1 cut(s)	355
BshFI	GGCC	2 cut(s)	348, 455
BsmAI	GTCTC	2 cut(s)	34, 398
BsnI	GGCC	2 cut(s)	348, 455
Bso31I	GGTCTC	1 cut(s)	398
Bsp143I	GATC	3 cut(s)	121, 168, 196
BspACI	CCGC	5 cut(s)	137, 334, 342, 353, 355
BspANI	GGCC	2 cut(s)	348, 455
BspCNI	CTCAG	1 cut(s)	19
BspFNI	CGCG	1 cut(s)	355
BspTNI	GGTCTC	1 cut(s)	398
BssECI	CCNNGG	2 cut(s)	353, 456
BssMI	GATC	3 cut(s)	121, 168, 196
BssNI	GRCGYC	1 cut(s)	116
Bst4CI	ACNGT	1 cut(s)	210
Bst6I	CTCTTC	3 cut(s)	75, 84, 93
BstACI	GRCGYC	1 cut(s)	116
BstDEI	CTNAG	4 cut(s)	27, 179, 380, 487
BstDSI	CCRYGG	1 cut(s)	353
BstFNI	CGCG	1 cut(s)	355
BstKTI	GATC	3 cut(s)	124, 171, 199
BstMAI	GTCTC	2 cut(s)	34, 398
BstMBI	GATC	3 cut(s)	121, 168, 196
BstMWI	GCNNNNNNNGC	2 cut(s)	339, 345
BstSFI	CTRYAG	1 cut(s)	158
BstUI	CGCG	1 cut(s)	355
BstV1I	GCAGC	2 cut(s)	323, 326
BsuRI	GGCC	2 cut(s)	348, 455
BtgI	CCRYGG	1 cut(s)	353
BtsIMutI	CAGTG	1 cut(s)	305
Cfr42I	CCGCGG	1 cut(s)	356
Csp6I	GTAC	1 cut(s)	206
CviAII	CATG	3 cut(s)	202, 284, 322
CviJI	RGCY	7 cut(s)	53, 178, 333, 348, 436, 455, 473
CviKI_1	RGCY	7 cut(s)	53, 178, 333, 348, 436, 455, 473
CviQI	GTAC	1 cut(s)	206
DdeI	CTNAG	4 cut(s)	27, 179, 380, 487
DpnI	GATC	3 cut(s)	123, 170, 198
DpnII	GATC	3 cut(s)	121, 168, 196
EaeI	YGGCCR	1 cut(s)	346
Eam1104I	CTCTTC	3 cut(s)	75, 84, 93
EarI	CTCTTC	3 cut(s)	75, 84, 93
Eco31I	GGTCTC	1 cut(s)	398
FaeI	CATG	3 cut(s)	205, 287, 325
FaiI	YATR	8 cut(s)	63, 149, 203, 285, 323, 390, 449, 470
FatI	CATG	3 cut(s)	201, 283, 321
Fnu4HI	GCNGC	3 cut(s)	334, 337, 340
Fsp4HI	GCNGC	3 cut(s)	334, 337, 340
FspBI	CTAG	2 cut(s)	213, 437
GluI	GCNGC	3 cut(s)	334, 337, 340
HaeIII	GGCC	2 cut(s)	348, 455
Hin1I	GRCGYC	1 cut(s)	116
Hin1II	CATG	3 cut(s)	205, 287, 325
HincII	GTYRAC	2 cut(s)	130, 463
HindII	GTYRAC	2 cut(s)	130, 463
HphI	GGTGA	2 cut(s)	151, 254
Hpy166II	GTNNAC	4 cut(s)	130, 142, 442, 463
Hpy188I	TCNGA	2 cut(s)	121, 515
Hpy188III	TCNNGA	1 cut(s)	213
Hpy8I	GTNNAC	4 cut(s)	130, 142, 442, 463
Hpy99I	CGWCG	1 cut(s)	118
HpyAV	CCTTC	1 cut(s)	410
HpyCH4III	ACNGT	1 cut(s)	210
HpyCH4IV	ACGT	1 cut(s)	116
HpyCH4V	TGCA	1 cut(s)	16
HpyF10VI	GCNNNNNNNGC	2 cut(s)	339, 345
HpyF3I	CTNAG	4 cut(s)	27, 179, 380, 487
HpySE526I	ACGT	1 cut(s)	116
Hsp92I	GRCGYC	1 cut(s)	116
Hsp92II	CATG	3 cut(s)	205, 287, 325
KspI	CCGCGG	1 cut(s)	356
Kzo9I	GATC	3 cut(s)	121, 168, 196
LmnI	GCTCC	1 cut(s)	175
LpnPI	CCDG	1 cut(s)	437
Lsp1109I	GCAGC	2 cut(s)	323, 326
LweI	GCATC	1 cut(s)	3
MaeI	CTAG	2 cut(s)	213, 437
MaeII	ACGT	1 cut(s)	116
MalI	GATC	3 cut(s)	123, 170, 198
MboI	GATC	3 cut(s)	121, 168, 196
MboII	GAAGA	7 cut(s)	19, 62, 71, 80, 178, 266, 362
MlsI	TGGCCA	1 cut(s)	348
MluNI	TGGCCA	1 cut(s)	348
MnlI	CCTC	9 cut(s)	24, 76, 96, 127, 156, 180, 209, 427, 451
Mox20I	TGGCCA	1 cut(s)	348
MscI	TGGCCA	1 cut(s)	348
MseI	TTAA	3 cut(s)	249, 405, 509
Msp20I	TGGCCA	1 cut(s)	348
MspA1I	CMGCKG	2 cut(s)	336, 355
MvnI	CGCG	1 cut(s)	355
MwoI	GCNNNNNNNGC	2 cut(s)	339, 345
NdeII	GATC	3 cut(s)	121, 168, 196
NlaIII	CATG	3 cut(s)	205, 287, 325
NmeAIII	GCCGAG	1 cut(s)	481
PkrI	GCNGC	3 cut(s)	335, 338, 341
PshBI	ATTAAT	1 cut(s)	509
RsaI	GTAC	1 cut(s)	207
RsaNI	GTAC	1 cut(s)	206
SacII	CCGCGG	1 cut(s)	356
SaqAI	TTAA	3 cut(s)	249, 405, 509
SatI	GCNGC	3 cut(s)	334, 337, 340
Sau3AI	GATC	3 cut(s)	121, 168, 196
SetI	ASST	3 cut(s)	119, 180, 462
SfaNI	GCATC	1 cut(s)	3
SfcI	CTRYAG	1 cut(s)	158
Sfr303I	CCGCGG	1 cut(s)	356
SgrBI	CCGCGG	1 cut(s)	356
SsiI	CCGC	5 cut(s)	137, 334, 342, 353, 355
SspMI	CTAG	2 cut(s)	213, 437
TaaI	ACNGT	1 cut(s)	210
TaiI	ACGT	1 cut(s)	119
TaqI	TCGA	2 cut(s)	113, 362
TauI	GCSGC	1 cut(s)	336
Tru1I	TTAA	3 cut(s)	249, 405, 509
Tru9I	TTAA	3 cut(s)	249, 405, 509
TscAI	CASTG	1 cut(s)	305
TseI	GCWGC	2 cut(s)	336, 339
TspDTI	ATGAA	1 cut(s)	85
TspRI	CASTG	1 cut(s)	305
VspI	ATTAAT	1 cut(s)	509
XbaI	TCTAGA	1 cut(s)	212
XspI	CTAG	2 cut(s)	213, 437
ZraI	GACGTC	1 cut(s)	117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.