Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0006418

Physical Location & Seq

Genomic Coordinates Forward (+)

50404927 .. 50407691

Gene Structure 2765 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0393700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGCAAAAGAAACCATTATATGTAGACTTATCTATCAACTTCCTTTCAAAGGTTTCATACCAGACACTTCATCAAGCTACAAGTGGATTCTCTCCGAGCACTCTAATTGGATCAGGAAGTTTTGGCATTGTATATAGAGGGATTCTAGATCAGGAAGAAAACATGGTAGTGGCAGTAAAGGTTCTGAACCTTCAACAACAAGGAGCTTCCAGAAGTTTCATGGCAGAATGTAATGCTCTAAGAAATATCCGGCACAAGAATCTTGTGAAGATCTTCACTTGTTGCTCCAGCACGGATTATAATGGCAATAAATTCAGAGCTCTAGTTTTTAAGTATATGTCAAACGGTAGTTTAGAGGAGTGGATGCACAGAGAAAACCAATCAAGGAGTTTGAACCTTATTCAAAGACTGAATATTGCTTATGATGTGGCTTCTGCATTGTGTTATCTTCATGATCATTGTGAACCTCAAATCATTCACTGTGACATGAAGCCAAGCAATGTTCTTCTTGATGATGACATGGTTGCTTGTGTAGGTGATTTTGGGTTAGCCAGAGTACTCCTCTCAACCACCGCAGAGTCTTCTCAAACTCAAAGTAGCACAATTGGAATAAGGGGAACAATGGGCTATGCGGCTCCAGAGTATGCAAGTGGTGTTGAGGCATCCTGGTCTTGGAAATGTTCACAGGAAGAAGACCCATCGATGAAAAGTTCAAAGATGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044798 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0090575 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

241

Amino Acids

26.82

Weight (kDa)

6.58

Isoelectric Point (pI)

54.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	34 - 216	1.8e-32	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	35 - 215	1.8e-32	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006418)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g28610
malus_domestica	MD00G1002600.v1.1 MD01G1191700.v1.1
prunus_persica	Prupe.2G286100_v2.0.a1
pyrus_communis	pycom01g20290 pycom07g23860
rosa_chinensis	RchiOBHm_Chr1g0368211 RchiOBHm_Chr1g0376061
rosa_laevigata	RLG00000026634 RLG00000027230
rosa_multiflora	Rmu_sc0023565.1_g000001 Rmu_ssc0000116.1_g000021
rosa_roxburghii	Rroxscaffold_4G00282410 Rroxscaffold_4G00288760
rosa_rugosa	Rorug01G0339200 Rorug01G0339300 Rorug01G0393700
rosa_samantha	Rh1AG346900 Rh1AG405100 Rh1BG309700 Rh1BG368700 Rh1CG325100 Rh1CG381600 Rh1DG341500 Rh1DG398600
rosa_wichuraiana	Rw1G030860 Rw1G035950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	300
AccI	GTMKAC	1 cut(s)	24
AciI	CCGC	2 cut(s)	573, 632
AclWI	GGATC	1 cut(s)	118
AcsI	RAATTY	1 cut(s)	311
AfaI	GTAC	1 cut(s)	558
AfiI	CCNNNNNNNGG	2 cut(s)	49, 672
AgsI	TTSAA	5 cut(s)	48, 194, 394, 404, 714
AjnI	CCWGG	1 cut(s)	665
AluBI	AGCT	3 cut(s)	77, 206, 320
AluI	AGCT	3 cut(s)	77, 206, 320
Alw21I	GWGCWC	2 cut(s)	101, 322
AlwI	GGATC	1 cut(s)	118
ApoI	RAATTY	1 cut(s)	311
Asp700I	GAANNNNTTC	1 cut(s)	272
AsuHPI	GGTGA	1 cut(s)	548
BanII	GRGCYC	1 cut(s)	322
BbsI	GAAGAC	5 cut(s)	29, 573, 659, 699, 904
Bbv12I	GWGCWC	2 cut(s)	101, 322
BccI	CCATC	2 cut(s)	706, 712
BciT130I	CCWGG	1 cut(s)	667
BclI	TGATCA	1 cut(s)	454
BfaI	CTAG	2 cut(s)	146, 323
BglII	AGATCT	1 cut(s)	270
BisI	GCNGC	1 cut(s)	633
BlsI	GCNGC	1 cut(s)	634
BmcAI	AGTACT	1 cut(s)	558
Bme1390I	CCNGG	1 cut(s)	667
BmiI	GGNNCC	1 cut(s)	636
BmrFI	CCNGG	1 cut(s)	667
BmsI	GCATC	2 cut(s)	354, 671
BpiI	GAAGAC	2 cut(s)	573, 699
BplI	GAGNNNNNCTC	2 cut(s)	546, 578
BpmI	CTGGAG	2 cut(s)	271, 621
Bsa29I	ATCGAT	1 cut(s)	701
Bsc4I	CCNNNNNNNGG	2 cut(s)	49, 672
Bse3DI	GCAATG	1 cut(s)	505
BseBI	CCWGG	1 cut(s)	667
BseCI	ATCGAT	1 cut(s)	701
BseGI	GGATG	2 cut(s)	369, 662
BseLI	CCNNNNNNNGG	2 cut(s)	49, 672
BseMI	GCAATG	1 cut(s)	505
BseRI	GAGGAG	2 cut(s)	371, 551
BshVI	ATCGAT	1 cut(s)	701
BsiHKAI	GWGCWC	2 cut(s)	101, 322
BsiSI	CCGG	1 cut(s)	250
BslI	CCNNNNNNNGG	2 cut(s)	49, 672
Bsp1286I	GDGCHC	2 cut(s)	101, 322
Bsp143I	GATC	4 cut(s)	110, 148, 270, 454
BspACI	CCGC	2 cut(s)	573, 632
BspDI	ATCGAT	1 cut(s)	701
BspHI	TCATGA	1 cut(s)	451
BspLI	GGNNCC	1 cut(s)	636
BspPI	GGATC	1 cut(s)	118
BsrDI	GCAATG	1 cut(s)	505
BssMI	GATC	4 cut(s)	110, 148, 270, 454
Bst2UI	CCWGG	1 cut(s)	667
Bst4CI	ACNGT	2 cut(s)	347, 482
BstDEI	CTNAG	1 cut(s)	239
BstENI	CCTNNNNNAGG	1 cut(s)	47
BstF5I	GGATG	2 cut(s)	369, 662
BstKTI	GATC	4 cut(s)	113, 151, 273, 457
BstMBI	GATC	4 cut(s)	110, 148, 270, 454
BstNI	CCWGG	1 cut(s)	667
BstSCI	CCNGG	1 cut(s)	665
BstV2I	GAAGAC	2 cut(s)	573, 699
BstX2I	RGATCY	1 cut(s)	270
BstYI	RGATCY	1 cut(s)	270
Bsu15I	ATCGAT	1 cut(s)	701
BsuTUI	ATCGAT	1 cut(s)	701
BtsCI	GGATG	2 cut(s)	369, 662
BtsIMutI	CAGTG	1 cut(s)	478
CciI	TCATGA	1 cut(s)	451
ClaI	ATCGAT	1 cut(s)	701
Csp6I	GTAC	1 cut(s)	557
CviAII	CATG	5 cut(s)	163, 220, 452, 487, 520
CviJI	RGCY	8 cut(s)	77, 206, 320, 431, 493, 551, 627, 635
CviKI_1	RGCY	8 cut(s)	77, 206, 320, 431, 493, 551, 627, 635
CviQI	GTAC	1 cut(s)	557
DdeI	CTNAG	1 cut(s)	239
DpnI	GATC	4 cut(s)	112, 150, 272, 456
DpnII	GATC	4 cut(s)	110, 148, 270, 454
Ecl136II	GAGCTC	1 cut(s)	320
Eco24I	GRGCYC	1 cut(s)	322
Eco53kI	GAGCTC	1 cut(s)	320
EcoICRI	GAGCTC	1 cut(s)	320
EcoNI	CCTNNNNNAGG	1 cut(s)	47
EcoRII	CCWGG	1 cut(s)	665
EcoT38I	GRGCYC	1 cut(s)	322
FaeI	CATG	5 cut(s)	166, 223, 455, 490, 523
FatI	CATG	5 cut(s)	162, 219, 451, 486, 519
FbaI	TGATCA	1 cut(s)	454
FblI	GTMKAC	1 cut(s)	24
Fnu4HI	GCNGC	1 cut(s)	633
FokI	GGATG	2 cut(s)	376, 649
FriOI	GRGCYC	1 cut(s)	322
Fsp4HI	GCNGC	1 cut(s)	633
FspBI	CTAG	2 cut(s)	146, 323
GluI	GCNGC	1 cut(s)	633
GsuI	CTGGAG	2 cut(s)	271, 621
HapII	CCGG	1 cut(s)	250
Hin1II	CATG	5 cut(s)	166, 223, 455, 490, 523
HinfI	GANTC	4 cut(s)	87, 142, 259, 578
HpaII	CCGG	1 cut(s)	250
HphI	GGTGA	1 cut(s)	548
Hpy166II	GTNNAC	3 cut(s)	25, 464, 683
Hpy188I	TCNGA	3 cut(s)	96, 186, 317
Hpy188III	TCNNGA	7 cut(s)	114, 146, 152, 210, 452, 509, 638
Hpy8I	GTNNAC	3 cut(s)	25, 464, 683
HpyAV	CCTTC	1 cut(s)	200
HpyCH4III	ACNGT	2 cut(s)	347, 482
HpyCH4V	TGCA	4 cut(s)	4, 367, 437, 647
HpyF3I	CTNAG	1 cut(s)	239
Hsp92II	CATG	5 cut(s)	166, 223, 455, 490, 523
Ksp22I	TGATCA	1 cut(s)	454
Kzo9I	GATC	4 cut(s)	110, 148, 270, 454
LmnI	GCTCC	3 cut(s)	203, 290, 640
LweI	GCATC	2 cut(s)	354, 671
MaeI	CTAG	2 cut(s)	146, 323
MaeIII	GTNAC	1 cut(s)	482
MalI	GATC	4 cut(s)	112, 150, 272, 456
MboI	GATC	4 cut(s)	110, 148, 270, 454
MboII	GAAGA	8 cut(s)	167, 265, 280, 440, 497, 573, 701, 704
MfeI	CAATTG	1 cut(s)	603
MflI	RGATCY	1 cut(s)	270
MhlI	GDGCHC	2 cut(s)	101, 322
MluCI	AATT	3 cut(s)	105, 311, 603
MlyI	GAGTC	1 cut(s)	587
MnlI	CCTC	5 cut(s)	131, 349, 477, 572, 652
MroXI	GAANNNNTTC	1 cut(s)	272
MseI	TTAA	1 cut(s)	330
MslI	CAYNNNNRTG	1 cut(s)	167
MspI	CCGG	1 cut(s)	250
MspR9I	CCNGG	1 cut(s)	667
MunI	CAATTG	1 cut(s)	603
MvaI	CCWGG	1 cut(s)	667
NdeII	GATC	4 cut(s)	110, 148, 270, 454
NlaIII	CATG	5 cut(s)	166, 223, 455, 490, 523
NlaIV	GGNNCC	1 cut(s)	636
NmuCI	GTSAC	1 cut(s)	482
PagI	TCATGA	1 cut(s)	451
PdmI	GAANNNNTTC	1 cut(s)	272
PfeI	GAWTC	3 cut(s)	87, 142, 259
PkrI	GCNGC	1 cut(s)	634
PleI	GAGTC	1 cut(s)	586
PpsI	GAGTC	1 cut(s)	586
PsiI	TTATAA	1 cut(s)	300
Psp124BI	GAGCTC	1 cut(s)	322
Psp6I	CCWGG	1 cut(s)	665
PspGI	CCWGG	1 cut(s)	665
PspN4I	GGNNCC	1 cut(s)	636
PsuI	RGATCY	1 cut(s)	270
RsaI	GTAC	1 cut(s)	558
RsaNI	GTAC	1 cut(s)	557
RseI	CAYNNNNRTG	1 cut(s)	167
SacI	GAGCTC	1 cut(s)	322
SaqAI	TTAA	1 cut(s)	330
SatI	GCNGC	1 cut(s)	633
Sau3AI	GATC	4 cut(s)	110, 148, 270, 454
ScaI	AGTACT	1 cut(s)	558
SchI	GAGTC	1 cut(s)	587
ScrFI	CCNGG	1 cut(s)	667
SduI	GDGCHC	2 cut(s)	101, 322
SetI	ASST	9 cut(s)	54, 79, 183, 192, 208, 322, 399, 469, 538
SfaNI	GCATC	2 cut(s)	354, 671
SmiMI	CAYNNNNRTG	1 cut(s)	167
Sse9I	AATT	3 cut(s)	105, 311, 603
SsiI	CCGC	2 cut(s)	573, 632
SspI	AATATT	1 cut(s)	415
SspMI	CTAG	2 cut(s)	146, 323
SstI	GAGCTC	1 cut(s)	322
StyD4I	CCNGG	1 cut(s)	665
TaaI	ACNGT	2 cut(s)	347, 482
TaqI	TCGA	1 cut(s)	701
TasI	AATT	3 cut(s)	105, 311, 603
TatI	WGTACW	1 cut(s)	556
TauI	GCSGC	1 cut(s)	635
TfiI	GAWTC	3 cut(s)	87, 142, 259
Tru1I	TTAA	1 cut(s)	330
Tru9I	TTAA	1 cut(s)	330
TscAI	CASTG	1 cut(s)	485
TseFI	GTSAC	1 cut(s)	482
Tsp45I	GTSAC	1 cut(s)	482
TspDTI	ATGAA	6 cut(s)	45, 59, 208, 440, 503, 719
TspGWI	ACGGA	1 cut(s)	308
TspRI	CASTG	1 cut(s)	485
XagI	CCTNNNNNAGG	1 cut(s)	47
XapI	RAATTY	1 cut(s)	311
XbaI	TCTAGA	1 cut(s)	145
XcmI	CCANNNNNNNNNTGG	1 cut(s)	217
XmiI	GTMKAC	1 cut(s)	24
XmnI	GAANNNNTTC	1 cut(s)	272
XspI	CTAG	2 cut(s)	146, 323
ZrmI	AGTACT	1 cut(s)	558

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.