Rh1CG381600

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0006418
Physical Location & Seq
Forward (+)
65152088 .. 65152866
779 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG381600.1

Sequence Viewer

Length: 630 bp
ATGCAACAGGATCTGATCATGATGCGGGGTAGTCATGAGGTTTTGCCATCTGATCTGCAGGGACGTAGTCTATCCAATATTAATATTAGTGAAGCAAATATTAACAATATGGCTACTGATTCTGACGAAAGGAAGATCATGCGTAGGGACAACGAGCGCCAAAGAAGACAAGTTATGGCGATTCGCACTGCATCACTTCGATCCCTCCTCCCTCTAGAATTAATCAAGGGAAAACGTTCAATCTCCGAGCACATAAATGAAGCAGTGAATTATATAAAGCAGCTGAAGGAAAAGATACAGGAGCTGAATGCCAAGAGGGAAGAGCTTAGAAGGGTGTATAAACATTACAGTAGTTCTGCACATGATTTCAGTCCTGAAATTAATGAAAATTTGGGTACTAAGAGTACTTCCAATATCATGGTTGGCCCAACATGTTGGGGTGGAGTGGAGATTGTGGTAAGTACTAATGGTACAAATTGCAGTGAGCTAGAAGGGTTTTCTCTTTCAGGAGTACTCAAAGCATTGCTTGCAGAGGGCCTTACCGTTGTGGAGTGTGCTTCCACCACAGCAAATCAGAGGTTGTTTCACTCTATTCAGTGTGAGGTATGGCTGTTGGTTCCTTTAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

209

Amino Acids

23.5

Weight (kDa)

6.97

Isoelectric Point (pI)

58.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 44 - 96 2.6e-07 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 25
AclI AACGTT 1 cut(s) 235
AclWI GGATC 2 cut(s) 18, 195
AcsI RAATTY 1 cut(s) 388
AcuI CTGAAG 1 cut(s) 305
AfaI GTAC 5 cut(s) 397, 406, 463, 472, 513
AflIII ACRYGT 1 cut(s) 431
AgsI TTSAA 1 cut(s) 240
AluBI AGCT 4 cut(s) 283, 304, 325, 487
AluI AGCT 4 cut(s) 283, 304, 325, 487
Alw21I GWGCWC 1 cut(s) 252
AlwI GGATC 2 cut(s) 18, 195
AlwNI CAGNNNCTG 2 cut(s) 13, 304
AoxI GGCC 2 cut(s) 424, 535
ApeKI GCWGC 1 cut(s) 280
ApoI RAATTY 1 cut(s) 388
AseI ATTAAT 3 cut(s) 81, 221, 381
Asp700I GAANNNNTTC 1 cut(s) 235
AspLEI GCGC 1 cut(s) 159
AspS9I GGNCC 2 cut(s) 425, 535
BbsI GAAGAC 1 cut(s) 172
Bbv12I GWGCWC 1 cut(s) 252
BbvI GCAGC 1 cut(s) 292
BccI CCATC 1 cut(s) 55
BclI TGATCA 1 cut(s) 15
BfaI CTAG 2 cut(s) 215, 488
BfmI CTRYAG 1 cut(s) 56
BfoI RGCGCY 1 cut(s) 160
BisI GCNGC 1 cut(s) 281
BlsI GCNGC 1 cut(s) 282
BmcAI AGTACT 3 cut(s) 406, 463, 513
BmgT120I GGNCC 2 cut(s) 425, 535
BmiI GGNNCC 1 cut(s) 618
BmsI GCATC 2 cut(s) 12, 200
BpiI GAAGAC 1 cut(s) 172
Bse3DI GCAATG 1 cut(s) 521
BseMI GCAATG 1 cut(s) 521
BseRI GAGGAG 1 cut(s) 197
BseXI GCAGC 1 cut(s) 292
BsgI GTGCAG 1 cut(s) 342
BshFI GGCC 2 cut(s) 426, 537
BsiHKAI GWGCWC 1 cut(s) 252
BslFI GGGAC 2 cut(s) 75, 161
BsmFI GGGAC 2 cut(s) 75, 161
BsmI GAATGC 1 cut(s) 313
BsnI GGCC 2 cut(s) 426, 537
Bsp1286I GDGCHC 1 cut(s) 252
Bsp143I GATC 5 cut(s) 10, 15, 52, 135, 200
BspACI CCGC 1 cut(s) 25
BspANI GGCC 2 cut(s) 426, 537
BspHI TCATGA 2 cut(s) 18, 34
BspLI GGNNCC 1 cut(s) 618
BspMAI CTGCAG 1 cut(s) 60
BspPI GGATC 2 cut(s) 18, 195
BspQI GCTCTTC 1 cut(s) 315
BsrDI GCAATG 1 cut(s) 521
BssMI GATC 5 cut(s) 10, 15, 52, 135, 200
Bst4CI ACNGT 2 cut(s) 350, 544
Bst6I CTCTTC 1 cut(s) 315
BstAPI GCANNNNNTGC 1 cut(s) 527
BstC8I GCNNGC 1 cut(s) 528
BstDEI CTNAG 2 cut(s) 326, 399
BstH2I RGCGCY 1 cut(s) 160
BstHHI GCGC 1 cut(s) 159
BstKTI GATC 5 cut(s) 13, 18, 55, 138, 203
BstMBI GATC 5 cut(s) 10, 15, 52, 135, 200
BstMWI GCNNNNNNNGC 1 cut(s) 527
BstNSI RCATGY 1 cut(s) 435
BstSFI CTRYAG 1 cut(s) 56
BstV1I GCAGC 1 cut(s) 292
BstV2I GAAGAC 1 cut(s) 172
BstX2I RGATCY 1 cut(s) 10
BstXI CCANNNNNNTGG 2 cut(s) 418, 435
BstYI RGATCY 1 cut(s) 10
BsuRI GGCC 2 cut(s) 426, 537
BtsI GCAGTG 3 cut(s) 186, 270, 487
BtsIMutI CAGTG 4 cut(s) 186, 270, 487, 602
Cac8I GCNNGC 1 cut(s) 528
CaiI CAGNNNCTG 2 cut(s) 13, 304
CciI TCATGA 2 cut(s) 18, 34
CfoI GCGC 1 cut(s) 159
Cfr13I GGNCC 2 cut(s) 425, 535
Csp6I GTAC 5 cut(s) 396, 405, 462, 471, 512
CviAII CATG 6 cut(s) 19, 35, 139, 362, 418, 432
CviJI RGCY 8 cut(s) 113, 283, 304, 325, 426, 487, 537, 610
CviKI_1 RGCY 8 cut(s) 113, 283, 304, 325, 426, 487, 537, 610
CviQI GTAC 5 cut(s) 396, 405, 462, 471, 512
DdeI CTNAG 2 cut(s) 326, 399
DpnI GATC 5 cut(s) 12, 17, 54, 137, 202
DpnII GATC 5 cut(s) 10, 15, 52, 135, 200
DraI TTTAAA 1 cut(s) 624
Eam1104I CTCTTC 1 cut(s) 315
EarI CTCTTC 1 cut(s) 315
Eco57I CTGAAG 1 cut(s) 305
EcoO109I RGGNCCY 1 cut(s) 535
FaeI CATG 6 cut(s) 22, 38, 142, 365, 421, 435
FalI AAGNNNNNCTT 2 cut(s) 510, 542
FaqI GGGAC 2 cut(s) 75, 161
FatI CATG 6 cut(s) 18, 34, 138, 361, 417, 431
FauI CCCGC 1 cut(s) 18
FbaI TGATCA 1 cut(s) 15
Fnu4HI GCNGC 1 cut(s) 281
Fsp4HI GCNGC 1 cut(s) 281
FspBI CTAG 2 cut(s) 215, 488
GlaI GCGC 1 cut(s) 158
GluI GCNGC 1 cut(s) 281
HaeII RGCGCY 1 cut(s) 160
HaeIII GGCC 2 cut(s) 426, 537
HhaI GCGC 1 cut(s) 159
Hin1II CATG 6 cut(s) 22, 38, 142, 365, 421, 435
Hin6I GCGC 1 cut(s) 157
HinP1I GCGC 1 cut(s) 157
HinfI GANTC 2 cut(s) 119, 181
Hpy188I TCNGA 5 cut(s) 15, 52, 124, 247, 576
Hpy188III TCNNGA 5 cut(s) 19, 35, 215, 374, 507
HpyAV CCTTC 3 cut(s) 280, 324, 485
HpyCH4III ACNGT 2 cut(s) 350, 544
HpyCH4IV ACGT 2 cut(s) 64, 235
HpyCH4V TGCA 6 cut(s) 4, 58, 191, 359, 480, 530
HpyF10VI GCNNNNNNNGC 1 cut(s) 527
HpyF3I CTNAG 2 cut(s) 326, 399
HpySE526I ACGT 2 cut(s) 64, 235
Hsp92II CATG 6 cut(s) 22, 38, 142, 365, 421, 435
HspAI GCGC 1 cut(s) 157
Ksp22I TGATCA 1 cut(s) 15
Kzo9I GATC 5 cut(s) 10, 15, 52, 135, 200
LguI GCTCTTC 1 cut(s) 315
LmnI GCTCC 1 cut(s) 301
LpnPI CCDG 4 cut(s) 44, 284, 387, 492
Lsp1109I GCAGC 1 cut(s) 292
LweI GCATC 2 cut(s) 12, 200
MaeI CTAG 2 cut(s) 215, 488
MaeII ACGT 2 cut(s) 64, 235
MalI GATC 5 cut(s) 12, 17, 54, 137, 202
MboI GATC 5 cut(s) 10, 15, 52, 135, 200
MboII GAAGA 3 cut(s) 145, 177, 332
MflI RGATCY 1 cut(s) 10
MhlI GDGCHC 1 cut(s) 252
MluCI AATT 6 cut(s) 218, 268, 378, 388, 475, 625
MnlI CCTC 8 cut(s) 31, 215, 218, 222, 309, 526, 570, 595
MroXI GAANNNNTTC 1 cut(s) 235
MseI TTAA 6 cut(s) 81, 102, 221, 381, 623, 628
MslI CAYNNNNRTG 1 cut(s) 255
MspA1I CMGCKG 1 cut(s) 283
Mva1269I GAATGC 1 cut(s) 313
MwoI GCNNNNNNNGC 1 cut(s) 527
NdeII GATC 5 cut(s) 10, 15, 52, 135, 200
NlaIII CATG 6 cut(s) 22, 38, 142, 365, 421, 435
NlaIV GGNNCC 1 cut(s) 618
NspI RCATGY 1 cut(s) 435
PagI TCATGA 2 cut(s) 18, 34
PciI ACATGT 1 cut(s) 431
PciSI GCTCTTC 1 cut(s) 315
PctI GAATGC 1 cut(s) 313
PdmI GAANNNNTTC 1 cut(s) 235
PfeI GAWTC 2 cut(s) 119, 181
PflFI GACNNNGTC 1 cut(s) 66
PkrI GCNGC 1 cut(s) 282
PscI ACATGT 1 cut(s) 431
PshBI ATTAAT 3 cut(s) 81, 221, 381
Psp1406I AACGTT 1 cut(s) 235
PspN4I GGNNCC 1 cut(s) 618
PspPI GGNCC 2 cut(s) 425, 535
PstI CTGCAG 1 cut(s) 60
PstNI CAGNNNCTG 2 cut(s) 13, 304
PsuI RGATCY 1 cut(s) 10
PsyI GACNNNGTC 1 cut(s) 66
PvuII CAGCTG 1 cut(s) 283
RsaI GTAC 5 cut(s) 397, 406, 463, 472, 513
RsaNI GTAC 5 cut(s) 396, 405, 462, 471, 512
RseI CAYNNNNRTG 1 cut(s) 255
SapI GCTCTTC 1 cut(s) 315
SaqAI TTAA 6 cut(s) 81, 102, 221, 381, 623, 628
SatI GCNGC 1 cut(s) 281
Sau3AI GATC 5 cut(s) 10, 15, 52, 135, 200
Sau96I GGNCC 2 cut(s) 425, 535
ScaI AGTACT 3 cut(s) 406, 463, 513
SduI GDGCHC 1 cut(s) 252
SetI ASST 9 cut(s) 42, 67, 238, 285, 306, 327, 489, 581, 606
SfaNI GCATC 2 cut(s) 12, 200
SfcI CTRYAG 1 cut(s) 56
SmiMI CAYNNNNRTG 1 cut(s) 255
Sse9I AATT 6 cut(s) 218, 268, 378, 388, 475, 625
SsiI CCGC 1 cut(s) 25
SspI AATATT 3 cut(s) 79, 85, 100
SspMI CTAG 2 cut(s) 215, 488
TaaI ACNGT 2 cut(s) 350, 544
TaiI ACGT 2 cut(s) 67, 238
TaqI TCGA 1 cut(s) 199
TasI AATT 6 cut(s) 218, 268, 378, 388, 475, 625
TatI WGTACW 3 cut(s) 404, 461, 511
TfiI GAWTC 2 cut(s) 119, 181
Tru1I TTAA 6 cut(s) 81, 102, 221, 381, 623, 628
Tru9I TTAA 6 cut(s) 81, 102, 221, 381, 623, 628
TscAI CASTG 4 cut(s) 193, 270, 487, 602
TseI GCWGC 1 cut(s) 280
TspDTI ATGAA 2 cut(s) 273, 399
TspRI CASTG 4 cut(s) 193, 270, 487, 602
Tth111I GACNNNGTC 1 cut(s) 66
VspI ATTAAT 3 cut(s) 81, 221, 381
XapI RAATTY 1 cut(s) 388
XbaI TCTAGA 1 cut(s) 214
XceI RCATGY 1 cut(s) 435
XmnI GAANNNNTTC 1 cut(s) 235
XspI CTAG 2 cut(s) 215, 488
ZrmI AGTACT 3 cut(s) 406, 463, 513
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.