Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000116.1

Orthogroup ID

OG0006418

Physical Location & Seq

Genomic Coordinates Forward (+)

107413 .. 108423

Gene Structure 1011 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000116.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

atgtttcctttccctcatgatcatcaaagcaaagatatggaattacaaatatcttcgagtactccccaccaagaagattttatgcaacagggtctgatcatgatgcggggtagtcatgatgttttgccatctgatctgcagggacatagtctatccaatattaatattagtgaagcaaatattaacaatatggctgctgattctgacgaaaggaagatcatgcgtagggacaacgagcgccaaagaagacaagttatggcgattcgcactgcatcacttcgatccctcctccctctagaattaatcaagggaaaacgttcaatctccgagcacataaatgaagcagtgaattatataaagcagctgaaggaaaagatacaggagctgaatgccaagagggaagagcttagaagggtgtataaacattacagtagttctgcacatgatttcagtcctgaaattgatgaaaatttgggtactaagagtacttccaatatcatggttggcccaacatgttggggtggagtggagattgtggctagtactaatggtacaaattgcagtgagctagaagggttttctctttcaggagtactcaaagcattgcttgcagagggccttaccgttgtggagtgtgcttccaccacagcaaatcagaggttgattcactctattcagtgtgaggtcgactatttggcatgtctggatttgtctgagctacaactgaaactaaattttttatgcaattctggctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

251

Amino Acids

28.13

Weight (kDa)

5.73

Isoelectric Point (pI)

57.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006418)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g28610
malus_domestica	MD00G1002600.v1.1 MD01G1191700.v1.1
prunus_persica	Prupe.2G286100_v2.0.a1
pyrus_communis	pycom01g20290 pycom07g23860
rosa_chinensis	RchiOBHm_Chr1g0368211 RchiOBHm_Chr1g0376061
rosa_laevigata	RLG00000026634 RLG00000027230
rosa_multiflora	Rmu_sc0023565.1_g000001 Rmu_ssc0000116.1_g000021
rosa_roxburghii	Rroxscaffold_4G00282410 Rroxscaffold_4G00288760
rosa_rugosa	Rorug01G0339200 Rorug01G0339300 Rorug01G0393700
rosa_samantha	Rh1AG346900 Rh1AG405100 Rh1BG309700 Rh1BG368700 Rh1CG325100 Rh1CG381600 Rh1DG341500 Rh1DG398600
rosa_wichuraiana	Rw1G030860 Rw1G035950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	687
AciI	CCGC	1 cut(s)	106
AclI	AACGTT	1 cut(s)	316
AclWI	GGATC	1 cut(s)	276
AcsI	RAATTY	2 cut(s)	469, 733
AcuI	CTGAAG	1 cut(s)	386
AfaI	GTAC	6 cut(s)	61, 478, 487, 544, 553, 594
AflIII	ACRYGT	1 cut(s)	512
AgsI	TTSAA	1 cut(s)	321
AluBI	AGCT	5 cut(s)	364, 385, 406, 568, 718
AluI	AGCT	5 cut(s)	364, 385, 406, 568, 718
Alw21I	GWGCWC	1 cut(s)	333
AlwI	GGATC	1 cut(s)	276
AlwNI	CAGNNNCTG	2 cut(s)	94, 385
AoxI	GGCC	2 cut(s)	505, 616
ApeKI	GCWGC	2 cut(s)	194, 361
ApoI	RAATTY	2 cut(s)	469, 733
AseI	ATTAAT	2 cut(s)	162, 302
Asp700I	GAANNNNTTC	1 cut(s)	316
AspLEI	GCGC	1 cut(s)	240
AspS9I	GGNCC	2 cut(s)	506, 616
BbsI	GAAGAC	1 cut(s)	253
Bbv12I	GWGCWC	1 cut(s)	333
BbvI	GCAGC	2 cut(s)	181, 373
BccI	CCATC	1 cut(s)	136
BclI	TGATCA	2 cut(s)	19, 96
BfaI	CTAG	4 cut(s)	296, 540, 569, 754
BfmI	CTRYAG	1 cut(s)	137
BfoI	RGCGCY	1 cut(s)	241
BisI	GCNGC	2 cut(s)	195, 362
BlsI	GCNGC	2 cut(s)	196, 363
BmcAI	AGTACT	4 cut(s)	61, 487, 544, 594
BmgT120I	GGNCC	2 cut(s)	506, 616
BmsI	GCATC	2 cut(s)	93, 281
BpiI	GAAGAC	1 cut(s)	253
Bse3DI	GCAATG	1 cut(s)	602
BseMI	GCAATG	1 cut(s)	602
BseMII	CTCAG	1 cut(s)	705
BseRI	GAGGAG	1 cut(s)	278
BseXI	GCAGC	2 cut(s)	181, 373
BsgI	GTGCAG	1 cut(s)	423
BshFI	GGCC	2 cut(s)	507, 618
BsiHKAI	GWGCWC	1 cut(s)	333
BslFI	GGGAC	2 cut(s)	156, 242
BsmFI	GGGAC	2 cut(s)	156, 242
BsmI	GAATGC	1 cut(s)	394
BsnI	GGCC	2 cut(s)	507, 618
Bsp1286I	GDGCHC	1 cut(s)	333
Bsp143I	GATC	5 cut(s)	19, 96, 133, 216, 281
BspACI	CCGC	1 cut(s)	106
BspANI	GGCC	2 cut(s)	507, 618
BspCNI	CTCAG	1 cut(s)	706
BspHI	TCATGA	3 cut(s)	16, 99, 115
BspMAI	CTGCAG	1 cut(s)	141
BspPI	GGATC	1 cut(s)	276
BspQI	GCTCTTC	1 cut(s)	396
BsrDI	GCAATG	1 cut(s)	602
BssMI	GATC	5 cut(s)	19, 96, 133, 216, 281
Bst4CI	ACNGT	2 cut(s)	431, 625
Bst6I	CTCTTC	1 cut(s)	396
BstAPI	GCANNNNNTGC	1 cut(s)	608
BstC8I	GCNNGC	1 cut(s)	609
BstDEI	CTNAG	3 cut(s)	407, 480, 714
BstH2I	RGCGCY	1 cut(s)	241
BstHHI	GCGC	1 cut(s)	240
BstKTI	GATC	5 cut(s)	22, 99, 136, 219, 284
BstMBI	GATC	5 cut(s)	19, 96, 133, 216, 281
BstMWI	GCNNNNNNNGC	2 cut(s)	608, 750
BstNSI	RCATGY	2 cut(s)	516, 702
BstSFI	CTRYAG	1 cut(s)	137
BstV1I	GCAGC	2 cut(s)	181, 373
BstV2I	GAAGAC	1 cut(s)	253
BstXI	CCANNNNNNTGG	2 cut(s)	499, 516
BsuRI	GGCC	2 cut(s)	507, 618
BtsI	GCAGTG	3 cut(s)	267, 351, 568
BtsIMutI	CAGTG	4 cut(s)	267, 351, 568, 683
Cac8I	GCNNGC	1 cut(s)	609
CaiI	CAGNNNCTG	2 cut(s)	94, 385
CciI	TCATGA	3 cut(s)	16, 99, 115
CfoI	GCGC	1 cut(s)	240
Cfr13I	GGNCC	2 cut(s)	506, 616
Csp6I	GTAC	6 cut(s)	60, 477, 486, 543, 552, 593
CviAII	CATG	8 cut(s)	17, 100, 116, 220, 443, 499, 513, 699
CviQI	GTAC	6 cut(s)	60, 477, 486, 543, 552, 593
DdeI	CTNAG	3 cut(s)	407, 480, 714
DpnI	GATC	5 cut(s)	21, 98, 135, 218, 283
DpnII	GATC	5 cut(s)	19, 96, 133, 216, 281
Eam1104I	CTCTTC	1 cut(s)	396
EarI	CTCTTC	1 cut(s)	396
Eco57I	CTGAAG	1 cut(s)	386
EcoO109I	RGGNCCY	1 cut(s)	616
FaeI	CATG	8 cut(s)	20, 103, 119, 223, 446, 502, 516, 702
FalI	AAGNNNNNCTT	2 cut(s)	591, 623
FaqI	GGGAC	2 cut(s)	156, 242
FatI	CATG	8 cut(s)	16, 99, 115, 219, 442, 498, 512, 698
FauI	CCCGC	1 cut(s)	99
FbaI	TGATCA	2 cut(s)	19, 96
FblI	GTMKAC	1 cut(s)	687
Fnu4HI	GCNGC	2 cut(s)	195, 362
Fsp4HI	GCNGC	2 cut(s)	195, 362
FspBI	CTAG	4 cut(s)	296, 540, 569, 754
GlaI	GCGC	1 cut(s)	239
GluI	GCNGC	2 cut(s)	195, 362
HaeII	RGCGCY	1 cut(s)	241
HaeIII	GGCC	2 cut(s)	507, 618
HhaI	GCGC	1 cut(s)	240
Hin1II	CATG	8 cut(s)	20, 103, 119, 223, 446, 502, 516, 702
Hin6I	GCGC	1 cut(s)	238
HinP1I	GCGC	1 cut(s)	238
HincII	GTYRAC	1 cut(s)	688
HindII	GTYRAC	1 cut(s)	688
HinfI	GANTC	3 cut(s)	200, 262, 664
Hpy166II	GTNNAC	1 cut(s)	688
Hpy188I	TCNGA	6 cut(s)	96, 133, 205, 328, 657, 715
Hpy188III	TCNNGA	7 cut(s)	17, 100, 116, 296, 455, 588, 704
Hpy8I	GTNNAC	1 cut(s)	688
HpyAV	CCTTC	3 cut(s)	361, 405, 566
HpyCH4III	ACNGT	2 cut(s)	431, 625
HpyCH4IV	ACGT	1 cut(s)	316
HpyCH4V	TGCA	7 cut(s)	85, 139, 272, 440, 561, 611, 744
HpyF10VI	GCNNNNNNNGC	2 cut(s)	608, 750
HpyF3I	CTNAG	3 cut(s)	407, 480, 714
HpySE526I	ACGT	1 cut(s)	316
Hsp92II	CATG	8 cut(s)	20, 103, 119, 223, 446, 502, 516, 702
HspAI	GCGC	1 cut(s)	238
Ksp22I	TGATCA	2 cut(s)	19, 96
Kzo9I	GATC	5 cut(s)	19, 96, 133, 216, 281
LguI	GCTCTTC	1 cut(s)	396
LmnI	GCTCC	1 cut(s)	382
LpnPI	CCDG	7 cut(s)	74, 125, 365, 468, 573, 689, 735
Lsp1109I	GCAGC	2 cut(s)	181, 373
LweI	GCATC	2 cut(s)	93, 281
MaeI	CTAG	4 cut(s)	296, 540, 569, 754
MaeII	ACGT	1 cut(s)	316
MalI	GATC	5 cut(s)	21, 98, 135, 218, 283
MboI	GATC	5 cut(s)	19, 96, 133, 216, 281
MboII	GAAGA	5 cut(s)	45, 86, 226, 258, 413
MhlI	GDGCHC	1 cut(s)	333
MluCI	AATT	8 cut(s)	41, 299, 349, 459, 469, 556, 733, 745
MnlI	CCTC	8 cut(s)	24, 296, 299, 303, 390, 607, 651, 676
MroXI	GAANNNNTTC	1 cut(s)	316
MseI	TTAA	3 cut(s)	162, 183, 302
MslI	CAYNNNNRTG	1 cut(s)	336
MspA1I	CMGCKG	1 cut(s)	364
Mva1269I	GAATGC	1 cut(s)	394
MwoI	GCNNNNNNNGC	2 cut(s)	608, 750
NdeII	GATC	5 cut(s)	19, 96, 133, 216, 281
NlaIII	CATG	8 cut(s)	20, 103, 119, 223, 446, 502, 516, 702
NspI	RCATGY	2 cut(s)	516, 702
PagI	TCATGA	3 cut(s)	16, 99, 115
PciI	ACATGT	1 cut(s)	512
PciSI	GCTCTTC	1 cut(s)	396
PctI	GAATGC	1 cut(s)	394
PdmI	GAANNNNTTC	1 cut(s)	316
PfeI	GAWTC	3 cut(s)	200, 262, 664
PflFI	GACNNNGTC	1 cut(s)	147
PkrI	GCNGC	2 cut(s)	196, 363
PscI	ACATGT	1 cut(s)	512
PshBI	ATTAAT	2 cut(s)	162, 302
Psp1406I	AACGTT	1 cut(s)	316
PspPI	GGNCC	2 cut(s)	506, 616
PstI	CTGCAG	1 cut(s)	141
PstNI	CAGNNNCTG	2 cut(s)	94, 385
PsyI	GACNNNGTC	1 cut(s)	147
PvuII	CAGCTG	1 cut(s)	364
RsaI	GTAC	6 cut(s)	61, 478, 487, 544, 553, 594
RsaNI	GTAC	6 cut(s)	60, 477, 486, 543, 552, 593
RseI	CAYNNNNRTG	1 cut(s)	336
SalI	GTCGAC	1 cut(s)	686
SapI	GCTCTTC	1 cut(s)	396
SaqAI	TTAA	3 cut(s)	162, 183, 302
SatI	GCNGC	2 cut(s)	195, 362
Sau3AI	GATC	5 cut(s)	19, 96, 133, 216, 281
Sau96I	GGNCC	2 cut(s)	506, 616
ScaI	AGTACT	4 cut(s)	61, 487, 544, 594
SduI	GDGCHC	1 cut(s)	333
SetI	ASST	8 cut(s)	319, 366, 387, 408, 570, 662, 687, 720
SfaNI	GCATC	2 cut(s)	93, 281
SfcI	CTRYAG	1 cut(s)	137
SmiMI	CAYNNNNRTG	1 cut(s)	336
Sse9I	AATT	8 cut(s)	41, 299, 349, 459, 469, 556, 733, 745
SsiI	CCGC	1 cut(s)	106
SspI	AATATT	3 cut(s)	160, 166, 181
SspMI	CTAG	4 cut(s)	296, 540, 569, 754
TaaI	ACNGT	2 cut(s)	431, 625
TaiI	ACGT	1 cut(s)	319
TaqI	TCGA	3 cut(s)	56, 280, 687
TasI	AATT	8 cut(s)	41, 299, 349, 459, 469, 556, 733, 745
TatI	WGTACW	4 cut(s)	59, 485, 542, 592
TfiI	GAWTC	3 cut(s)	200, 262, 664
Tru1I	TTAA	3 cut(s)	162, 183, 302
Tru9I	TTAA	3 cut(s)	162, 183, 302
TscAI	CASTG	4 cut(s)	274, 351, 568, 683
TseI	GCWGC	2 cut(s)	194, 361
TspDTI	ATGAA	2 cut(s)	354, 480
TspRI	CASTG	4 cut(s)	274, 351, 568, 683
Tth111I	GACNNNGTC	1 cut(s)	147
VspI	ATTAAT	2 cut(s)	162, 302
XapI	RAATTY	2 cut(s)	469, 733
XbaI	TCTAGA	1 cut(s)	295
XceI	RCATGY	2 cut(s)	516, 702
XmiI	GTMKAC	1 cut(s)	687
XmnI	GAANNNNTTC	1 cut(s)	316
XspI	CTAG	4 cut(s)	296, 540, 569, 754
ZrmI	AGTACT	4 cut(s)	61, 487, 544, 594

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.