RLG00000027230

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0006418
Physical Location & Seq
Reverse (-)
9759051 .. 9759962
912 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027230

Sequence Viewer

Length: 657 bp
ATGATGCGGGGTAGTCATGAGGTTTTGCCATCTGATCTGCAGGGACGTAGTCTATCCAATAGTAATATTAGTAAAGCAAGTATTAACAATATGGCTACTGATCCTGACGAAAGGAAGATCAAGCGTAGGGACAATGAGCGCCAAAGAAGACAAGTTATGGCGATTCGCACTGCATCACTTCGATCCCTCCTCCCTCTTGAATTAATTAAGGGAAAACGTTCAATCTCCGAGCACATAAATGAAGCAGTGAATTATATAAAGCAGCTGAAGGAGAAGATACAGGAGCTGAATGCCAAGAAGGAAGAGCTTAGAAGGGTGTATAAACATTACAGTAGTTCCGCACATGATTTCAGTCCTGAAATTAATGAAAATTTGGGTACTAAGAGTACTTCCAATATCATGGTTGGCCCAACATGTTGGGGTGGAGTGGAGATTGTGGTAAGTACTAATAGTACAAATTGCAGTGAGCTAGAAGGGTTTTCTCTTTCAGGAGTACTCAAAGCATTGCTTGCAGAGAGCCTTACCGTTGTGGAGTGTGCTTCCACTGCAGCAAATAAGAGGTCGTTTCACTCTATTCAGTGTGAGGTCGACGCTTCGGCATGTATGGATTTGTCTGAGCTACAACTGAAACTAAATTTTTTATGCAATTCTGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

219

Amino Acids

24.21

Weight (kDa)

8.51

Isoelectric Point (pI)

58.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 38 - 90 2.8e-07 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 588
AciI CCGC 2 cut(s) 7, 339
AclI AACGTT 1 cut(s) 217
AclWI GGATC 2 cut(s) 95, 177
AcsI RAATTY 2 cut(s) 370, 634
AcuI CTGAAG 1 cut(s) 287
AfaI GTAC 5 cut(s) 379, 388, 445, 454, 495
AflIII ACRYGT 1 cut(s) 413
AgsI TTSAA 2 cut(s) 200, 222
AluBI AGCT 5 cut(s) 265, 286, 307, 469, 619
AluI AGCT 5 cut(s) 265, 286, 307, 469, 619
Alw21I GWGCWC 1 cut(s) 234
AlwI GGATC 2 cut(s) 95, 177
AlwNI CAGNNNCTG 1 cut(s) 286
AoxI GGCC 1 cut(s) 406
ApeKI GCWGC 2 cut(s) 262, 548
ApoI RAATTY 2 cut(s) 370, 634
ArsI GACNNNNNNTTYG 2 cut(s) 545, 577
AseI ATTAAT 2 cut(s) 203, 363
Asp700I GAANNNNTTC 1 cut(s) 217
AspLEI GCGC 1 cut(s) 141
AspS9I GGNCC 1 cut(s) 407
BbsI GAAGAC 1 cut(s) 154
Bbv12I GWGCWC 1 cut(s) 234
BbvI GCAGC 2 cut(s) 274, 560
BccI CCATC 1 cut(s) 37
BfaI CTAG 2 cut(s) 470, 655
BfmI CTRYAG 2 cut(s) 38, 546
BfoI RGCGCY 1 cut(s) 142
BisI GCNGC 2 cut(s) 263, 549
BlsI GCNGC 2 cut(s) 264, 550
BmcAI AGTACT 3 cut(s) 388, 445, 495
BmgT120I GGNCC 1 cut(s) 407
BmsI GCATC 1 cut(s) 182
BpiI GAAGAC 1 cut(s) 154
Bse3DI GCAATG 1 cut(s) 503
BseMI GCAATG 1 cut(s) 503
BseMII CTCAG 1 cut(s) 606
BseRI GAGGAG 1 cut(s) 179
BseXI GCAGC 2 cut(s) 274, 560
BshFI GGCC 1 cut(s) 408
BsiHKAI GWGCWC 1 cut(s) 234
BslFI GGGAC 2 cut(s) 57, 143
BsmFI GGGAC 2 cut(s) 57, 143
BsmI GAATGC 1 cut(s) 295
BsnI GGCC 1 cut(s) 408
Bsp1286I GDGCHC 1 cut(s) 234
Bsp143I GATC 4 cut(s) 34, 100, 117, 182
BspACI CCGC 2 cut(s) 7, 339
BspANI GGCC 1 cut(s) 408
BspCNI CTCAG 1 cut(s) 607
BspHI TCATGA 1 cut(s) 16
BspMAI CTGCAG 2 cut(s) 42, 550
BspPI GGATC 2 cut(s) 95, 177
BspQI GCTCTTC 1 cut(s) 297
BsrDI GCAATG 1 cut(s) 503
BssMI GATC 4 cut(s) 34, 100, 117, 182
Bst4CI ACNGT 2 cut(s) 332, 526
Bst6I CTCTTC 1 cut(s) 297
BstAPI GCANNNNNTGC 1 cut(s) 509
BstC8I GCNNGC 1 cut(s) 510
BstDEI CTNAG 3 cut(s) 308, 381, 615
BstH2I RGCGCY 1 cut(s) 142
BstHHI GCGC 1 cut(s) 141
BstKTI GATC 4 cut(s) 37, 103, 120, 185
BstMBI GATC 4 cut(s) 34, 100, 117, 182
BstMWI GCNNNNNNNGC 3 cut(s) 509, 545, 651
BstNSI RCATGY 2 cut(s) 417, 603
BstSFI CTRYAG 2 cut(s) 38, 546
BstV1I GCAGC 2 cut(s) 274, 560
BstV2I GAAGAC 1 cut(s) 154
BstXI CCANNNNNNTGG 2 cut(s) 400, 417
BsuRI GGCC 1 cut(s) 408
BtsI GCAGTG 4 cut(s) 168, 252, 469, 543
BtsIMutI CAGTG 5 cut(s) 168, 252, 469, 543, 584
Cac8I GCNNGC 1 cut(s) 510
CaiI CAGNNNCTG 1 cut(s) 286
CciI TCATGA 1 cut(s) 16
CfoI GCGC 1 cut(s) 141
Cfr13I GGNCC 1 cut(s) 407
CseI GACGC 1 cut(s) 599
Csp6I GTAC 5 cut(s) 378, 387, 444, 453, 494
CviAII CATG 5 cut(s) 17, 344, 400, 414, 600
CviJI RGCY 9 cut(s) 95, 265, 286, 307, 408, 469, 519, 619, 654
CviKI_1 RGCY 9 cut(s) 95, 265, 286, 307, 408, 469, 519, 619, 654
CviQI GTAC 5 cut(s) 378, 387, 444, 453, 494
DdeI CTNAG 3 cut(s) 308, 381, 615
DpnI GATC 4 cut(s) 36, 102, 119, 184
DpnII GATC 4 cut(s) 34, 100, 117, 182
Eam1104I CTCTTC 1 cut(s) 297
EarI CTCTTC 1 cut(s) 297
Eco57I CTGAAG 1 cut(s) 287
FaeI CATG 5 cut(s) 20, 347, 403, 417, 603
FalI AAGNNNNNCTT 2 cut(s) 492, 524
FaqI GGGAC 2 cut(s) 57, 143
FatI CATG 5 cut(s) 16, 343, 399, 413, 599
FblI GTMKAC 1 cut(s) 588
Fnu4HI GCNGC 2 cut(s) 263, 549
Fsp4HI GCNGC 2 cut(s) 263, 549
FspBI CTAG 2 cut(s) 470, 655
GlaI GCGC 1 cut(s) 140
GluI GCNGC 2 cut(s) 263, 549
HaeII RGCGCY 1 cut(s) 142
HaeIII GGCC 1 cut(s) 408
HgaI GACGC 1 cut(s) 599
HhaI GCGC 1 cut(s) 141
Hin1II CATG 5 cut(s) 20, 347, 403, 417, 603
Hin6I GCGC 1 cut(s) 139
HinP1I GCGC 1 cut(s) 139
HincII GTYRAC 1 cut(s) 589
HindII GTYRAC 1 cut(s) 589
HinfI GANTC 1 cut(s) 163
Hpy166II GTNNAC 1 cut(s) 589
Hpy188I TCNGA 3 cut(s) 34, 229, 616
Hpy188III TCNNGA 5 cut(s) 17, 104, 197, 356, 489
Hpy8I GTNNAC 1 cut(s) 589
Hpy99I CGWCG 1 cut(s) 593
HpyAV CCTTC 4 cut(s) 262, 292, 306, 467
HpyCH4III ACNGT 2 cut(s) 332, 526
HpyCH4IV ACGT 2 cut(s) 46, 217
HpyCH4V TGCA 6 cut(s) 40, 173, 462, 512, 548, 645
HpyF10VI GCNNNNNNNGC 3 cut(s) 509, 545, 651
HpyF3I CTNAG 3 cut(s) 308, 381, 615
HpySE526I ACGT 2 cut(s) 46, 217
Hsp92II CATG 5 cut(s) 20, 347, 403, 417, 603
HspAI GCGC 1 cut(s) 139
Kzo9I GATC 4 cut(s) 34, 100, 117, 182
LguI GCTCTTC 1 cut(s) 297
LmnI GCTCC 1 cut(s) 283
LpnPI CCDG 6 cut(s) 26, 117, 266, 369, 474, 636
Lsp1109I GCAGC 2 cut(s) 274, 560
LweI GCATC 1 cut(s) 182
MaeI CTAG 2 cut(s) 470, 655
MaeII ACGT 2 cut(s) 46, 217
MalI GATC 4 cut(s) 36, 102, 119, 184
MboI GATC 4 cut(s) 34, 100, 117, 182
MboII GAAGA 4 cut(s) 127, 159, 286, 314
MhlI GDGCHC 1 cut(s) 234
MluCI AATT 8 cut(s) 200, 204, 250, 360, 370, 457, 634, 646
MnlI CCTC 6 cut(s) 13, 197, 200, 204, 552, 577
MroXI GAANNNNTTC 1 cut(s) 217
MseI TTAA 4 cut(s) 84, 203, 207, 363
MslI CAYNNNNRTG 1 cut(s) 237
MspA1I CMGCKG 1 cut(s) 265
Mva1269I GAATGC 1 cut(s) 295
MwoI GCNNNNNNNGC 3 cut(s) 509, 545, 651
NdeII GATC 4 cut(s) 34, 100, 117, 182
NlaIII CATG 5 cut(s) 20, 347, 403, 417, 603
NspI RCATGY 2 cut(s) 417, 603
PacI TTAATTAA 1 cut(s) 207
PagI TCATGA 1 cut(s) 16
PciI ACATGT 1 cut(s) 413
PciSI GCTCTTC 1 cut(s) 297
PctI GAATGC 1 cut(s) 295
PdmI GAANNNNTTC 1 cut(s) 217
PfeI GAWTC 1 cut(s) 163
PflFI GACNNNGTC 1 cut(s) 48
PkrI GCNGC 2 cut(s) 264, 550
PscI ACATGT 1 cut(s) 413
PshBI ATTAAT 2 cut(s) 203, 363
Psp1406I AACGTT 1 cut(s) 217
PspPI GGNCC 1 cut(s) 407
PstI CTGCAG 2 cut(s) 42, 550
PstNI CAGNNNCTG 1 cut(s) 286
PsyI GACNNNGTC 1 cut(s) 48
PvuII CAGCTG 1 cut(s) 265
RsaI GTAC 5 cut(s) 379, 388, 445, 454, 495
RsaNI GTAC 5 cut(s) 378, 387, 444, 453, 494
RseI CAYNNNNRTG 1 cut(s) 237
SalI GTCGAC 1 cut(s) 587
SapI GCTCTTC 1 cut(s) 297
SaqAI TTAA 4 cut(s) 84, 203, 207, 363
SatI GCNGC 2 cut(s) 263, 549
Sau3AI GATC 4 cut(s) 34, 100, 117, 182
Sau96I GGNCC 1 cut(s) 407
ScaI AGTACT 3 cut(s) 388, 445, 495
SduI GDGCHC 1 cut(s) 234
SfaNI GCATC 1 cut(s) 182
SfcI CTRYAG 2 cut(s) 38, 546
SmiMI CAYNNNNRTG 1 cut(s) 237
Sse9I AATT 8 cut(s) 200, 204, 250, 360, 370, 457, 634, 646
SsiI CCGC 2 cut(s) 7, 339
SspI AATATT 1 cut(s) 67
SspMI CTAG 2 cut(s) 470, 655
TaaI ACNGT 2 cut(s) 332, 526
TaiI ACGT 2 cut(s) 49, 220
TaqI TCGA 2 cut(s) 181, 588
TasI AATT 8 cut(s) 200, 204, 250, 360, 370, 457, 634, 646
TatI WGTACW 4 cut(s) 386, 443, 452, 493
TfiI GAWTC 1 cut(s) 163
Tru1I TTAA 4 cut(s) 84, 203, 207, 363
Tru9I TTAA 4 cut(s) 84, 203, 207, 363
TscAI CASTG 5 cut(s) 175, 252, 469, 550, 584
TseI GCWGC 2 cut(s) 262, 548
TspDTI ATGAA 2 cut(s) 255, 381
TspRI CASTG 5 cut(s) 175, 252, 469, 550, 584
Tth111I GACNNNGTC 1 cut(s) 48
VspI ATTAAT 2 cut(s) 203, 363
XapI RAATTY 2 cut(s) 370, 634
XceI RCATGY 2 cut(s) 417, 603
XmiI GTMKAC 1 cut(s) 588
XmnI GAANNNNTTC 1 cut(s) 217
XspI CTAG 2 cut(s) 470, 655
ZrmI AGTACT 3 cut(s) 388, 445, 495
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.