Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0006418

Physical Location & Seq

Genomic Coordinates Forward (+)

24643554 .. 24644488

Gene Structure 935 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g23860.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGTTTCCTAATTCATATCATCATGATCAAAGCAAAGATTTGGTATTCCAGACTTCCTTTATTGATGATTCCCACCATAATGATATGATGCAAGTAGAAGATCTAATGCGGGGTCATGAGGTTTTTCCAGAGGAGAAGAATCCATCCCGTAATAAGATAATGGGAAAAGGCAAGCAGCGGCAACAACATATGATATTATCACCTAATTCCAGTAATACTGGAGAAAATAATAGTGATGGTAAGACTGAAAGGAAGATCGTGCGTAGGGACAACGAACGCCAAAGAAGACAGCTTATGGCAGTTCTTAATTCATCACTTCGATCCCTCCTCCCCTGTGAATTGATCAAGGGAAAACGTTCAATCACCGAGCACATGAATGAGGCCGTCAATTATATAAATCACACGAAGGCGAAGATTGAAGAACTGAATGCCAAGAGGGAAAAGATTAAAAAGTTGTATGAATGTGATTCTAAAGATTTTGGTCTCGAAAATGAAAGTTCGGGTCACGATTTTCTTAAGTGCTCTATCATGGTTCACCCAACCTGTTTGGGGGCAGTGGAGGTTGTGATAAGTAGTAGCTGCAGCGAGCAGGAAGGGTTGCCTCTTTCGGGAGTGCTCAAAGTATTGCTTGCGGAAGGCCTTAGTGTTGTTGAGTGTGCTTCCACCAGAGTAAATGAAAGTTCGTTTCACAACATTCAGTGTGAGGTGCATACTCGTTCCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

242

Amino Acids

27.41

Weight (kDa)

6.64

Isoelectric Point (pI)

56.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006418)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g28610
malus_domestica	MD00G1002600.v1.1 MD01G1191700.v1.1
prunus_persica	Prupe.2G286100_v2.0.a1
pyrus_communis	pycom01g20290 pycom07g23860
rosa_chinensis	RchiOBHm_Chr1g0368211 RchiOBHm_Chr1g0376061
rosa_laevigata	RLG00000026634 RLG00000027230
rosa_multiflora	Rmu_sc0023565.1_g000001 Rmu_ssc0000116.1_g000021
rosa_roxburghii	Rroxscaffold_4G00282410 Rroxscaffold_4G00288760
rosa_rugosa	Rorug01G0339200 Rorug01G0339300 Rorug01G0393700
rosa_samantha	Rh1AG346900 Rh1AG405100 Rh1BG309700 Rh1BG368700 Rh1CG325100 Rh1CG381600 Rh1DG341500 Rh1DG398600
rosa_wichuraiana	Rw1G030860 Rw1G035950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	109, 178, 632
AclI	AACGTT	1 cut(s)	355
AclWI	GGATC	1 cut(s)	315
AfiI	CCNNNNNNNGG	2 cut(s)	549, 608
AflII	CTTAAG	1 cut(s)	515
AgsI	TTSAA	2 cut(s)	360, 419
AluBI	AGCT	2 cut(s)	292, 579
AluI	AGCT	2 cut(s)	292, 579
Alw21I	GWGCWC	3 cut(s)	372, 524, 618
Alw26I	GTCTC	1 cut(s)	488
AlwI	GGATC	1 cut(s)	315
AoxI	GGCC	2 cut(s)	381, 637
ApeKI	GCWGC	3 cut(s)	175, 579, 582
Asp700I	GAANNNNTTC	1 cut(s)	355
AsuHPI	GGTGA	3 cut(s)	192, 355, 527
BbsI	GAAGAC	1 cut(s)	292
Bbv12I	GWGCWC	3 cut(s)	372, 524, 618
BbvI	GCAGC	3 cut(s)	187, 566, 594
BccI	CCATC	2 cut(s)	151, 230
BceAI	ACGGC	1 cut(s)	368
BclI	TGATCA	2 cut(s)	25, 342
BcoDI	GTCTC	1 cut(s)	488
BfmI	CTRYAG	1 cut(s)	580
BfrI	CTTAAG	1 cut(s)	515
BglII	AGATCT	1 cut(s)	100
BisI	GCNGC	4 cut(s)	176, 179, 580, 583
BlsI	GCNGC	4 cut(s)	177, 180, 581, 584
BmsI	GCATC	1 cut(s)	78
BpiI	GAAGAC	1 cut(s)	292
BpmI	CTGGAG	1 cut(s)	240
BsaI	GGTCTC	1 cut(s)	488
Bsc4I	CCNNNNNNNGG	2 cut(s)	549, 608
Bse1I	ACTGG	2 cut(s)	210, 223
BseGI	GGATG	1 cut(s)	143
BseLI	CCNNNNNNNGG	2 cut(s)	549, 608
BseNI	ACTGG	2 cut(s)	210, 223
BseRI	GAGGAG	2 cut(s)	146, 317
BseXI	GCAGC	3 cut(s)	187, 566, 594
BshFI	GGCC	2 cut(s)	383, 639
BsiHKAI	GWGCWC	3 cut(s)	372, 524, 618
BslFI	GGGAC	1 cut(s)	281
BslI	CCNNNNNNNGG	2 cut(s)	549, 608
BsmAI	GTCTC	1 cut(s)	488
BsmFI	GGGAC	1 cut(s)	281
BsmI	GAATGC	1 cut(s)	433
BsnI	GGCC	2 cut(s)	383, 639
Bso31I	GGTCTC	1 cut(s)	488
Bsp1286I	GDGCHC	3 cut(s)	372, 524, 618
Bsp143I	GATC	5 cut(s)	25, 100, 255, 320, 342
BspACI	CCGC	3 cut(s)	109, 178, 632
BspANI	GGCC	2 cut(s)	383, 639
BspHI	TCATGA	2 cut(s)	22, 115
BspMAI	CTGCAG	1 cut(s)	584
BspPI	GGATC	1 cut(s)	315
BspTI	CTTAAG	1 cut(s)	515
BspTNI	GGTCTC	1 cut(s)	488
BsrI	ACTGG	2 cut(s)	210, 223
BssMI	GATC	5 cut(s)	25, 100, 255, 320, 342
BstAFI	CTTAAG	1 cut(s)	515
BstC8I	GCNNGC	3 cut(s)	173, 587, 630
BstDEI	CTNAG	1 cut(s)	641
BstF5I	GGATG	1 cut(s)	143
BstKTI	GATC	5 cut(s)	28, 103, 258, 323, 345
BstMAI	GTCTC	1 cut(s)	488
BstMBI	GATC	5 cut(s)	25, 100, 255, 320, 342
BstSFI	CTRYAG	1 cut(s)	580
BstV1I	GCAGC	3 cut(s)	187, 566, 594
BstV2I	GAAGAC	1 cut(s)	292
BstX2I	RGATCY	1 cut(s)	100
BstYI	RGATCY	1 cut(s)	100
BsuRI	GGCC	2 cut(s)	383, 639
BtsCI	GGATG	1 cut(s)	143
BtsI	GCAGTG	1 cut(s)	561
BtsIMutI	CAGTG	2 cut(s)	561, 704
Cac8I	GCNNGC	3 cut(s)	173, 587, 630
CciI	TCATGA	2 cut(s)	22, 115
CviAII	CATG	4 cut(s)	23, 116, 373, 529
CviJI	RGCY	4 cut(s)	292, 383, 579, 639
CviKI_1	RGCY	4 cut(s)	292, 383, 579, 639
DdeI	CTNAG	1 cut(s)	641
DpnI	GATC	5 cut(s)	27, 102, 257, 322, 344
DpnII	GATC	5 cut(s)	25, 100, 255, 320, 342
Eco147I	AGGCCT	1 cut(s)	639
Eco31I	GGTCTC	1 cut(s)	488
FaeI	CATG	4 cut(s)	26, 119, 376, 532
FalI	AAGNNNNNCTT	2 cut(s)	612, 644
FaqI	GGGAC	1 cut(s)	281
FatI	CATG	4 cut(s)	22, 115, 372, 528
FauI	CCCGC	1 cut(s)	102
FauNDI	CATATG	1 cut(s)	189
FbaI	TGATCA	2 cut(s)	25, 342
Fnu4HI	GCNGC	4 cut(s)	176, 179, 580, 583
FokI	GGATG	1 cut(s)	130
Fsp4HI	GCNGC	4 cut(s)	176, 179, 580, 583
GluI	GCNGC	4 cut(s)	176, 179, 580, 583
GsuI	CTGGAG	1 cut(s)	240
HaeIII	GGCC	2 cut(s)	383, 639
Hin1II	CATG	4 cut(s)	26, 119, 376, 532
HinfI	GANTC	3 cut(s)	68, 139, 467
HphI	GGTGA	3 cut(s)	192, 355, 527
Hpy166II	GTNNAC	1 cut(s)	535
Hpy188III	TCNNGA	7 cut(s)	23, 49, 116, 128, 485, 506, 609
Hpy8I	GTNNAC	1 cut(s)	535
HpyAV	CCTTC	3 cut(s)	400, 587, 629
HpyCH4IV	ACGT	1 cut(s)	355
HpyCH4V	TGCA	3 cut(s)	91, 582, 709
HpyF3I	CTNAG	1 cut(s)	641
HpySE526I	ACGT	1 cut(s)	355
Hsp92II	CATG	4 cut(s)	26, 119, 376, 532
Ksp22I	TGATCA	2 cut(s)	25, 342
Kzo9I	GATC	5 cut(s)	25, 100, 255, 320, 342
LpnPI	CCDG	8 cut(s)	62, 141, 204, 223, 346, 556, 575, 679
Lsp1109I	GCAGC	3 cut(s)	187, 566, 594
LweI	GCATC	1 cut(s)	78
MaeII	ACGT	1 cut(s)	355
MaeIII	GTNAC	1 cut(s)	503
MalI	GATC	5 cut(s)	27, 102, 257, 322, 344
MboI	GATC	5 cut(s)	25, 100, 255, 320, 342
MboII	GAAGA	6 cut(s)	110, 148, 265, 297, 424, 431
MflI	RGATCY	1 cut(s)	100
MhlI	GDGCHC	3 cut(s)	372, 524, 618
MluCI	AATT	5 cut(s)	10, 205, 307, 338, 388
MnlI	CCTC	9 cut(s)	112, 124, 335, 338, 373, 429, 553, 612, 697
MroXI	GAANNNNTTC	1 cut(s)	355
MseI	TTAA	3 cut(s)	306, 447, 516
MslI	CAYNNNNRTG	2 cut(s)	78, 375
MspA1I	CMGCKG	1 cut(s)	178
MspCI	CTTAAG	1 cut(s)	515
Mva1269I	GAATGC	1 cut(s)	433
NdeI	CATATG	1 cut(s)	189
NdeII	GATC	5 cut(s)	25, 100, 255, 320, 342
NlaIII	CATG	4 cut(s)	26, 119, 376, 532
NmuCI	GTSAC	1 cut(s)	503
PagI	TCATGA	2 cut(s)	22, 115
PceI	AGGCCT	1 cut(s)	639
PctI	GAATGC	1 cut(s)	433
PdmI	GAANNNNTTC	1 cut(s)	355
PfeI	GAWTC	3 cut(s)	68, 139, 467
PkrI	GCNGC	4 cut(s)	177, 180, 581, 584
Psp1406I	AACGTT	1 cut(s)	355
PstI	CTGCAG	1 cut(s)	584
PsuI	RGATCY	1 cut(s)	100
RseI	CAYNNNNRTG	2 cut(s)	78, 375
SaqAI	TTAA	3 cut(s)	306, 447, 516
SatI	GCNGC	4 cut(s)	176, 179, 580, 583
Sau3AI	GATC	5 cut(s)	25, 100, 255, 320, 342
SduI	GDGCHC	3 cut(s)	372, 524, 618
SetI	ASST	8 cut(s)	123, 205, 294, 358, 545, 564, 581, 708
SfaNI	GCATC	1 cut(s)	78
SfcI	CTRYAG	1 cut(s)	580
SmiMI	CAYNNNNRTG	2 cut(s)	78, 375
SmlI	CTYRAG	1 cut(s)	515
SmoI	CTYRAG	1 cut(s)	515
Sse9I	AATT	5 cut(s)	10, 205, 307, 338, 388
SseBI	AGGCCT	1 cut(s)	639
SsiI	CCGC	3 cut(s)	109, 178, 632
StuI	AGGCCT	1 cut(s)	639
TaiI	ACGT	1 cut(s)	358
TaqI	TCGA	2 cut(s)	319, 486
TasI	AATT	5 cut(s)	10, 205, 307, 338, 388
TauI	GCSGC	1 cut(s)	181
TfiI	GAWTC	3 cut(s)	68, 139, 467
Tru1I	TTAA	3 cut(s)	306, 447, 516
Tru9I	TTAA	3 cut(s)	306, 447, 516
TscAI	CASTG	2 cut(s)	561, 704
TseFI	GTSAC	1 cut(s)	503
TseI	GCWGC	3 cut(s)	175, 579, 582
Tsp45I	GTSAC	1 cut(s)	503
TspDTI	ATGAA	5 cut(s)	300, 389, 474, 507, 690
TspRI	CASTG	2 cut(s)	561, 704
Vha464I	CTTAAG	1 cut(s)	515
XmnI	GAANNNNTTC	1 cut(s)	355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.