Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0006418

Physical Location & Seq

Genomic Coordinates Reverse (-)

9432808 .. 9433251

Gene Structure 444 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00288760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGATTCTAGCTAGGGTTTTATGTTTTGATGGGGGTATACAGGGAAAACGTTCAATCTCCGAGCACATAAATGAAGCAGTGAATTATATAAAGCAGCTGAAGGAGAAGATACAGGAGCTGAATGCCAAGAAGGAAGAGCTTAGAATGGTGCATAAACATTACAGTAGTTCTGCACATGATTTCAGTCCTGAAATTAATGAAAATTTGGGTACTAAGAGTACTTCCAATATCATGGTTGGCCCAACATGTTGGGGTGGAGTGGAGATTGTGGTAAGTACTAATAGTACAAATTGCATTGCGCTAGAAGGGTTTTCTCTTTCAGGAGTACTCAAAGCATTGCTTGCAGAGGGCCTTACCGTTGTGGAGTGTGCTTCCACTGCAGCAAAAAAGAGGTCGTTTCACTCTATTCAGTGTGAGGTATGGCTGTTGGTTCCTTTAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

147

Amino Acids

16.1

Weight (kDa)

6.95

Isoelectric Point (pI)

48.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006418)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g28610
malus_domestica	MD00G1002600.v1.1 MD01G1191700.v1.1
prunus_persica	Prupe.2G286100_v2.0.a1
pyrus_communis	pycom01g20290 pycom07g23860
rosa_chinensis	RchiOBHm_Chr1g0368211 RchiOBHm_Chr1g0376061
rosa_laevigata	RLG00000026634 RLG00000027230
rosa_multiflora	Rmu_sc0023565.1_g000001 Rmu_ssc0000116.1_g000021
rosa_roxburghii	Rroxscaffold_4G00282410 Rroxscaffold_4G00288760
rosa_rugosa	Rorug01G0339200 Rorug01G0339300 Rorug01G0393700
rosa_samantha	Rh1AG346900 Rh1AG405100 Rh1BG309700 Rh1BG368700 Rh1CG325100 Rh1CG381600 Rh1DG341500 Rh1DG398600
rosa_wichuraiana	Rw1G030860 Rw1G035950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	37
AclI	AACGTT	1 cut(s)	49
AcsI	RAATTY	1 cut(s)	202
AcuI	CTGAAG	1 cut(s)	119
AfaI	GTAC	5 cut(s)	211, 220, 277, 286, 327
AflIII	ACRYGT	1 cut(s)	245
AgsI	TTSAA	1 cut(s)	54
AluBI	AGCT	4 cut(s)	11, 97, 118, 139
AluI	AGCT	4 cut(s)	11, 97, 118, 139
Alw21I	GWGCWC	1 cut(s)	66
AlwNI	CAGNNNCTG	1 cut(s)	118
AoxI	GGCC	2 cut(s)	238, 349
ApeKI	GCWGC	2 cut(s)	94, 380
ApoI	RAATTY	1 cut(s)	202
ArsI	GACNNNNNNTTYG	2 cut(s)	377, 409
AseI	ATTAAT	1 cut(s)	195
Asp700I	GAANNNNTTC	1 cut(s)	49
AspLEI	GCGC	1 cut(s)	301
AspS9I	GGNCC	2 cut(s)	239, 349
Bbv12I	GWGCWC	1 cut(s)	66
BbvI	GCAGC	2 cut(s)	106, 392
BccI	CCATC	1 cut(s)	23
BfaI	CTAG	3 cut(s)	8, 12, 302
BfmI	CTRYAG	1 cut(s)	378
BisI	GCNGC	2 cut(s)	95, 381
BlsI	GCNGC	2 cut(s)	96, 382
BmcAI	AGTACT	3 cut(s)	220, 277, 327
BmgT120I	GGNCC	2 cut(s)	239, 349
BmiI	GGNNCC	1 cut(s)	432
Bse3DI	GCAATG	2 cut(s)	294, 335
BseMI	GCAATG	2 cut(s)	294, 335
BseXI	GCAGC	2 cut(s)	106, 392
BsgI	GTGCAG	1 cut(s)	156
BshFI	GGCC	2 cut(s)	240, 351
BsiHKAI	GWGCWC	1 cut(s)	66
BsmI	GAATGC	1 cut(s)	127
BsnI	GGCC	2 cut(s)	240, 351
Bsp1286I	GDGCHC	1 cut(s)	66
BspANI	GGCC	2 cut(s)	240, 351
BspLI	GGNNCC	1 cut(s)	432
BspMAI	CTGCAG	1 cut(s)	382
BspQI	GCTCTTC	1 cut(s)	129
BsrDI	GCAATG	2 cut(s)	294, 335
BssNAI	GTATAC	1 cut(s)	38
Bst1107I	GTATAC	1 cut(s)	38
Bst4CI	ACNGT	2 cut(s)	164, 358
Bst6I	CTCTTC	1 cut(s)	129
BstAPI	GCANNNNNTGC	1 cut(s)	341
BstC8I	GCNNGC	1 cut(s)	342
BstDEI	CTNAG	2 cut(s)	140, 213
BstHHI	GCGC	1 cut(s)	301
BstMWI	GCNNNNNNNGC	2 cut(s)	341, 377
BstNSI	RCATGY	1 cut(s)	249
BstSFI	CTRYAG	1 cut(s)	378
BstV1I	GCAGC	2 cut(s)	106, 392
BstXI	CCANNNNNNTGG	2 cut(s)	232, 249
BstZ17I	GTATAC	1 cut(s)	38
BsuRI	GGCC	2 cut(s)	240, 351
BtsI	GCAGTG	2 cut(s)	84, 375
BtsIMutI	CAGTG	3 cut(s)	84, 375, 416
Cac8I	GCNNGC	1 cut(s)	342
CaiI	CAGNNNCTG	1 cut(s)	118
CfoI	GCGC	1 cut(s)	301
Cfr13I	GGNCC	2 cut(s)	239, 349
Csp6I	GTAC	5 cut(s)	210, 219, 276, 285, 326
CviAII	CATG	3 cut(s)	176, 232, 246
CviJI	RGCY	7 cut(s)	11, 97, 118, 139, 240, 351, 424
CviKI_1	RGCY	7 cut(s)	11, 97, 118, 139, 240, 351, 424
CviQI	GTAC	5 cut(s)	210, 219, 276, 285, 326
DdeI	CTNAG	2 cut(s)	140, 213
DraI	TTTAAA	1 cut(s)	438
Eam1104I	CTCTTC	1 cut(s)	129
EarI	CTCTTC	1 cut(s)	129
Eco57I	CTGAAG	1 cut(s)	119
EcoO109I	RGGNCCY	1 cut(s)	349
FaeI	CATG	3 cut(s)	179, 235, 249
FalI	AAGNNNNNCTT	2 cut(s)	324, 356
FatI	CATG	3 cut(s)	175, 231, 245
FblI	GTMKAC	1 cut(s)	37
Fnu4HI	GCNGC	2 cut(s)	95, 381
Fsp4HI	GCNGC	2 cut(s)	95, 381
FspBI	CTAG	3 cut(s)	8, 12, 302
GlaI	GCGC	1 cut(s)	300
GluI	GCNGC	2 cut(s)	95, 381
HaeIII	GGCC	2 cut(s)	240, 351
HhaI	GCGC	1 cut(s)	301
Hin1II	CATG	3 cut(s)	179, 235, 249
Hin6I	GCGC	1 cut(s)	299
HinP1I	GCGC	1 cut(s)	299
HinfI	GANTC	1 cut(s)	4
Hpy166II	GTNNAC	1 cut(s)	38
Hpy188I	TCNGA	1 cut(s)	61
Hpy188III	TCNNGA	2 cut(s)	188, 321
Hpy8I	GTNNAC	1 cut(s)	38
HpyAV	CCTTC	3 cut(s)	94, 124, 299
HpyCH4III	ACNGT	2 cut(s)	164, 358
HpyCH4IV	ACGT	1 cut(s)	49
HpyCH4V	TGCA	5 cut(s)	151, 173, 294, 344, 380
HpyF10VI	GCNNNNNNNGC	2 cut(s)	341, 377
HpyF3I	CTNAG	2 cut(s)	140, 213
HpySE526I	ACGT	1 cut(s)	49
Hsp92II	CATG	3 cut(s)	179, 235, 249
HspAI	GCGC	1 cut(s)	299
LguI	GCTCTTC	1 cut(s)	129
LmnI	GCTCC	1 cut(s)	115
LpnPI	CCDG	4 cut(s)	26, 98, 201, 306
Lsp1109I	GCAGC	2 cut(s)	106, 392
MaeI	CTAG	3 cut(s)	8, 12, 302
MaeII	ACGT	1 cut(s)	49
MboII	GAAGA	2 cut(s)	118, 146
MhlI	GDGCHC	1 cut(s)	66
MluCI	AATT	5 cut(s)	82, 192, 202, 289, 439
MnlI	CCTC	3 cut(s)	340, 384, 409
MroXI	GAANNNNTTC	1 cut(s)	49
MseI	TTAA	3 cut(s)	195, 437, 442
MslI	CAYNNNNRTG	1 cut(s)	69
MspA1I	CMGCKG	1 cut(s)	97
Mva1269I	GAATGC	1 cut(s)	127
MwoI	GCNNNNNNNGC	2 cut(s)	341, 377
NlaIII	CATG	3 cut(s)	179, 235, 249
NlaIV	GGNNCC	1 cut(s)	432
NspI	RCATGY	1 cut(s)	249
PciI	ACATGT	1 cut(s)	245
PciSI	GCTCTTC	1 cut(s)	129
PctI	GAATGC	1 cut(s)	127
PdmI	GAANNNNTTC	1 cut(s)	49
PfeI	GAWTC	1 cut(s)	4
PkrI	GCNGC	2 cut(s)	96, 382
PscI	ACATGT	1 cut(s)	245
PshBI	ATTAAT	1 cut(s)	195
Psp1406I	AACGTT	1 cut(s)	49
PspN4I	GGNNCC	1 cut(s)	432
PspPI	GGNCC	2 cut(s)	239, 349
PstI	CTGCAG	1 cut(s)	382
PstNI	CAGNNNCTG	1 cut(s)	118
PvuII	CAGCTG	1 cut(s)	97
RsaI	GTAC	5 cut(s)	211, 220, 277, 286, 327
RsaNI	GTAC	5 cut(s)	210, 219, 276, 285, 326
RseI	CAYNNNNRTG	1 cut(s)	69
SapI	GCTCTTC	1 cut(s)	129
SaqAI	TTAA	3 cut(s)	195, 437, 442
SatI	GCNGC	2 cut(s)	95, 381
Sau96I	GGNCC	2 cut(s)	239, 349
ScaI	AGTACT	3 cut(s)	220, 277, 327
SduI	GDGCHC	1 cut(s)	66
SetI	ASST	7 cut(s)	13, 52, 99, 120, 141, 395, 420
SfcI	CTRYAG	1 cut(s)	378
SmiMI	CAYNNNNRTG	1 cut(s)	69
Sse9I	AATT	5 cut(s)	82, 192, 202, 289, 439
SspMI	CTAG	3 cut(s)	8, 12, 302
TaaI	ACNGT	2 cut(s)	164, 358
TaiI	ACGT	1 cut(s)	52
TasI	AATT	5 cut(s)	82, 192, 202, 289, 439
TatI	WGTACW	4 cut(s)	218, 275, 284, 325
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	3 cut(s)	195, 437, 442
Tru9I	TTAA	3 cut(s)	195, 437, 442
TscAI	CASTG	3 cut(s)	84, 382, 416
TseI	GCWGC	2 cut(s)	94, 380
TspDTI	ATGAA	2 cut(s)	87, 213
TspRI	CASTG	3 cut(s)	84, 382, 416
VspI	ATTAAT	1 cut(s)	195
XapI	RAATTY	1 cut(s)	202
XceI	RCATGY	1 cut(s)	249
XmiI	GTMKAC	1 cut(s)	37
XmnI	GAANNNNTTC	1 cut(s)	49
XspI	CTAG	3 cut(s)	8, 12, 302
ZrmI	AGTACT	3 cut(s)	220, 277, 327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.