FvH4_7g28610

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0006418
Physical Location & Seq
Forward (+)
21185529 .. 21186919
1391 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g28610.t1

Sequence Viewer

Length: 759 bp
ATGTTTCCTTTCCCTCATGATCATCAAAGCGAATATTTGGGATTCGAAGTATCTTCGACTCCCCAACAAGAAGATTTTATGCAACAAGATCTGATCATGATGCCGGATAGTCTTGACGTTTTGCCATCTCATGATCTGCAGGGATTCAGTTTATCCAATATTAATATTAGTGAAGCAAATGTTAATAATAAGGATACTGATGCGCACGAGAGGAAGATCATGCGTAGGGACAATGAGCGCCAACGGAGACAACTTATGGCGATTCGTACTGCATCACTTCGATCCCTCCTCCCTCTTGAATCCATCAAGGGAAAACGTTCACTCTCGGAGCACATCAACGAAGCAGTGAATTATATAAAGCAACTGAAGGAGAAGATACAGGAGCTGAATGCCAAGAGGGAAGAGCTTAGAAGGGTGCATCAACAATATTACAGTAGTTCTGCTCATGATTTCAGTCCTGAAATTACTGGAAATTTGGGTACTAAGAGTACTTCCAATATCATGGTTGGCCCAACATGTTGGGGTGGAGTGGAGATTGTGGTAAGTACTAGTAGTACAAATTGCAGTGAGCTAGAAGGGTTTGCTCTTTCAGGAGTACTGAAAGCATTGCTTGCGGAGGGCCTTACCATTGTGGAGTGTGCTTCCACCACAGTAAATCAGAGGTTGTTTCACACTATTCAGTGTGAGGTGGAAGATTTGGCTTGTCAGAATTTGCCTGAGCTGCAACTGAAACTGAATTATTTATGCAATTCTGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

253

Amino Acids

28.4

Weight (kDa)

5.4

Isoelectric Point (pI)

61.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 71 - 123 8.8e-07 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 204
AciI CCGC 1 cut(s) 614
AclI AACGTT 1 cut(s) 316
AclWI GGATC 1 cut(s) 276
AcsI RAATTY 2 cut(s) 472, 709
AcuI CTGAAG 1 cut(s) 386
AfaI GTAC 6 cut(s) 268, 481, 490, 547, 556, 597
AflIII ACRYGT 1 cut(s) 515
AgsI TTSAA 1 cut(s) 299
AhlI ACTAGT 1 cut(s) 548
AluBI AGCT 4 cut(s) 385, 406, 571, 721
AluI AGCT 4 cut(s) 385, 406, 571, 721
Alw21I GWGCWC 1 cut(s) 333
Alw26I GTCTC 1 cut(s) 241
AlwI GGATC 1 cut(s) 276
AlwNI CAGNNNCTG 1 cut(s) 385
AoxI GGCC 2 cut(s) 508, 619
ApeKI GCWGC 1 cut(s) 721
ApoI RAATTY 2 cut(s) 472, 709
AseI ATTAAT 1 cut(s) 162
Asp700I GAANNNNTTC 1 cut(s) 316
AspLEI GCGC 2 cut(s) 205, 240
AspS9I GGNCC 2 cut(s) 509, 619
AsuII TTCGAA 1 cut(s) 45
BauI CACGAG 1 cut(s) 206
Bbv12I GWGCWC 1 cut(s) 333
BbvI GCAGC 1 cut(s) 708
BccI CCATC 2 cut(s) 133, 311
BciVI GTATCC 1 cut(s) 187
BclI TGATCA 2 cut(s) 19, 93
BcoDI GTCTC 1 cut(s) 241
BcuI ACTAGT 1 cut(s) 548
BfaI CTAG 3 cut(s) 549, 572, 757
BfmI CTRYAG 1 cut(s) 137
BfoI RGCGCY 1 cut(s) 241
BfuI GTATCC 1 cut(s) 187
BglII AGATCT 1 cut(s) 88
BisI GCNGC 1 cut(s) 722
BlsI GCNGC 1 cut(s) 723
BmcAI AGTACT 3 cut(s) 490, 547, 597
BmgT120I GGNCC 2 cut(s) 509, 619
BmsI GCATC 4 cut(s) 90, 190, 281, 427
Bpu10I CCTNAGC 1 cut(s) 717
Bpu14I TTCGAA 1 cut(s) 45
Bse1I ACTGG 1 cut(s) 472
Bse3DI GCAATG 1 cut(s) 605
BseMI GCAATG 1 cut(s) 605
BseMII CTCAG 1 cut(s) 708
BseNI ACTGG 1 cut(s) 472
BseRI GAGGAG 1 cut(s) 278
BseXI GCAGC 1 cut(s) 708
BshFI GGCC 2 cut(s) 510, 621
BsiHKAI GWGCWC 1 cut(s) 333
BsiSI CCGG 1 cut(s) 104
BslFI GGGAC 1 cut(s) 242
BsmAI GTCTC 1 cut(s) 241
BsmFI GGGAC 1 cut(s) 242
BsmI GAATGC 1 cut(s) 394
BsnI GGCC 2 cut(s) 510, 621
Bsp119I TTCGAA 1 cut(s) 45
Bsp1286I GDGCHC 1 cut(s) 333
Bsp143I GATC 6 cut(s) 19, 88, 93, 133, 216, 281
BspACI CCGC 1 cut(s) 614
BspANI GGCC 2 cut(s) 510, 621
BspCNI CTCAG 1 cut(s) 709
BspHI TCATGA 4 cut(s) 16, 96, 130, 445
BspMAI CTGCAG 1 cut(s) 141
BspPI GGATC 1 cut(s) 276
BspQI GCTCTTC 1 cut(s) 396
BspT104I TTCGAA 1 cut(s) 45
BsrDI GCAATG 1 cut(s) 605
BsrI ACTGG 1 cut(s) 472
BssMI GATC 6 cut(s) 19, 88, 93, 133, 216, 281
BssSI CACGAG 1 cut(s) 206
Bst2BI CACGAG 1 cut(s) 206
Bst4CI ACNGT 2 cut(s) 434, 652
Bst6I CTCTTC 1 cut(s) 396
BstAPI GCANNNNNTGC 1 cut(s) 611
BstBI TTCGAA 1 cut(s) 45
BstC8I GCNNGC 1 cut(s) 612
BstDEI CTNAG 3 cut(s) 407, 483, 717
BstH2I RGCGCY 1 cut(s) 241
BstHHI GCGC 2 cut(s) 205, 240
BstKTI GATC 6 cut(s) 22, 91, 96, 136, 219, 284
BstMAI GTCTC 1 cut(s) 241
BstMBI GATC 6 cut(s) 19, 88, 93, 133, 216, 281
BstMWI GCNNNNNNNGC 3 cut(s) 611, 721, 753
BstNSI RCATGY 1 cut(s) 519
BstSFI CTRYAG 1 cut(s) 137
BstV1I GCAGC 1 cut(s) 708
BstX2I RGATCY 1 cut(s) 88
BstXI CCANNNNNNTGG 2 cut(s) 502, 519
BstYI RGATCY 1 cut(s) 88
BsuI GTATCC 1 cut(s) 187
BsuRI GGCC 2 cut(s) 510, 621
BtsI GCAGTG 2 cut(s) 351, 571
BtsIMutI CAGTG 3 cut(s) 351, 571, 686
Cac8I GCNNGC 1 cut(s) 612
CaiI CAGNNNCTG 1 cut(s) 385
CciI TCATGA 4 cut(s) 16, 96, 130, 445
CfoI GCGC 2 cut(s) 205, 240
Cfr13I GGNCC 2 cut(s) 509, 619
Csp6I GTAC 6 cut(s) 267, 480, 489, 546, 555, 596
CviAII CATG 7 cut(s) 17, 97, 131, 220, 446, 502, 516
CviJI RGCY 8 cut(s) 385, 406, 510, 571, 621, 701, 721, 756
CviKI_1 RGCY 8 cut(s) 385, 406, 510, 571, 621, 701, 721, 756
CviQI GTAC 6 cut(s) 267, 480, 489, 546, 555, 596
DdeI CTNAG 3 cut(s) 407, 483, 717
DpnI GATC 6 cut(s) 21, 90, 95, 135, 218, 283
DpnII GATC 6 cut(s) 19, 88, 93, 133, 216, 281
Eam1104I CTCTTC 1 cut(s) 396
EarI CTCTTC 1 cut(s) 396
Eco57I CTGAAG 1 cut(s) 386
EcoO109I RGGNCCY 1 cut(s) 619
FaeI CATG 7 cut(s) 20, 100, 134, 223, 449, 505, 519
FalI AAGNNNNNCTT 2 cut(s) 594, 626
FaqI GGGAC 1 cut(s) 242
FatI CATG 7 cut(s) 16, 96, 130, 219, 445, 501, 515
FbaI TGATCA 2 cut(s) 19, 93
Fnu4HI GCNGC 1 cut(s) 722
Fsp4HI GCNGC 1 cut(s) 722
FspAI RTGCGCAY 1 cut(s) 204
FspBI CTAG 3 cut(s) 549, 572, 757
FspI TGCGCA 1 cut(s) 204
GlaI GCGC 2 cut(s) 204, 239
GluI GCNGC 1 cut(s) 722
HaeII RGCGCY 1 cut(s) 241
HaeIII GGCC 2 cut(s) 510, 621
HapII CCGG 1 cut(s) 104
HhaI GCGC 2 cut(s) 205, 240
Hin1II CATG 7 cut(s) 20, 100, 134, 223, 449, 505, 519
Hin6I GCGC 2 cut(s) 203, 238
HinP1I GCGC 2 cut(s) 203, 238
HinfI GANTC 5 cut(s) 42, 58, 144, 262, 299
HpaII CCGG 1 cut(s) 104
Hpy166II GTNNAC 1 cut(s) 320
Hpy188I TCNGA 4 cut(s) 93, 328, 660, 708
Hpy188III TCNNGA 8 cut(s) 17, 97, 113, 131, 296, 446, 458, 591
Hpy8I GTNNAC 1 cut(s) 320
HpyAV CCTTC 3 cut(s) 361, 405, 569
HpyCH4III ACNGT 2 cut(s) 434, 652
HpyCH4IV ACGT 2 cut(s) 117, 316
HpyCH4V TGCA 7 cut(s) 82, 139, 272, 418, 564, 724, 747
HpyF10VI GCNNNNNNNGC 3 cut(s) 611, 721, 753
HpyF3I CTNAG 3 cut(s) 407, 483, 717
HpySE526I ACGT 2 cut(s) 117, 316
Hsp92II CATG 7 cut(s) 20, 100, 134, 223, 449, 505, 519
HspAI GCGC 2 cut(s) 203, 238
Ksp22I TGATCA 2 cut(s) 19, 93
Kzo9I GATC 6 cut(s) 19, 88, 93, 133, 216, 281
LguI GCTCTTC 1 cut(s) 396
LmnI GCTCC 2 cut(s) 328, 382
LpnPI CCDG 8 cut(s) 117, 125, 365, 453, 471, 576, 729, 738
Lsp1109I GCAGC 1 cut(s) 708
LweI GCATC 4 cut(s) 90, 190, 281, 427
MaeI CTAG 3 cut(s) 549, 572, 757
MaeII ACGT 2 cut(s) 117, 316
MalI GATC 6 cut(s) 21, 90, 95, 135, 218, 283
MboI GATC 6 cut(s) 19, 88, 93, 133, 216, 281
MboII GAAGA 6 cut(s) 45, 83, 226, 385, 413, 704
MflI RGATCY 1 cut(s) 88
MhlI GDGCHC 1 cut(s) 333
MluCI AATT 7 cut(s) 349, 462, 472, 559, 709, 736, 748
MlyI GAGTC 1 cut(s) 52
MnlI CCTC 9 cut(s) 24, 204, 296, 299, 303, 390, 610, 654, 679
MroXI GAANNNNTTC 1 cut(s) 316
MseI TTAA 2 cut(s) 162, 183
MspI CCGG 1 cut(s) 104
Mva1269I GAATGC 1 cut(s) 394
MwoI GCNNNNNNNGC 3 cut(s) 611, 721, 753
NdeII GATC 6 cut(s) 19, 88, 93, 133, 216, 281
NlaIII CATG 7 cut(s) 20, 100, 134, 223, 449, 505, 519
NsbI TGCGCA 1 cut(s) 204
NspI RCATGY 1 cut(s) 519
NspV TTCGAA 1 cut(s) 45
PagI TCATGA 4 cut(s) 16, 96, 130, 445
PciI ACATGT 1 cut(s) 515
PciSI GCTCTTC 1 cut(s) 396
PctI GAATGC 1 cut(s) 394
PdmI GAANNNNTTC 1 cut(s) 316
PfeI GAWTC 4 cut(s) 42, 144, 262, 299
PkrI GCNGC 1 cut(s) 723
PleI GAGTC 1 cut(s) 52
PpsI GAGTC 1 cut(s) 52
PscI ACATGT 1 cut(s) 515
PshBI ATTAAT 1 cut(s) 162
Psp1406I AACGTT 1 cut(s) 316
PspPI GGNCC 2 cut(s) 509, 619
PstI CTGCAG 1 cut(s) 141
PstNI CAGNNNCTG 1 cut(s) 385
PsuI RGATCY 1 cut(s) 88
RsaI GTAC 6 cut(s) 268, 481, 490, 547, 556, 597
RsaNI GTAC 6 cut(s) 267, 480, 489, 546, 555, 596
SapI GCTCTTC 1 cut(s) 396
SaqAI TTAA 2 cut(s) 162, 183
SatI GCNGC 1 cut(s) 722
Sau3AI GATC 6 cut(s) 19, 88, 93, 133, 216, 281
Sau96I GGNCC 2 cut(s) 509, 619
ScaI AGTACT 3 cut(s) 490, 547, 597
SchI GAGTC 1 cut(s) 52
SduI GDGCHC 1 cut(s) 333
SetI ASST 8 cut(s) 120, 319, 387, 408, 573, 665, 690, 723
SfaNI GCATC 4 cut(s) 90, 190, 281, 427
SfcI CTRYAG 1 cut(s) 137
SfuI TTCGAA 1 cut(s) 45
SpeI ACTAGT 1 cut(s) 548
Sse9I AATT 7 cut(s) 349, 462, 472, 559, 709, 736, 748
SsiI CCGC 1 cut(s) 614
SspI AATATT 4 cut(s) 35, 160, 166, 428
SspMI CTAG 3 cut(s) 549, 572, 757
TaaI ACNGT 2 cut(s) 434, 652
TaiI ACGT 2 cut(s) 120, 319
TaqI TCGA 3 cut(s) 45, 56, 280
TasI AATT 7 cut(s) 349, 462, 472, 559, 709, 736, 748
TatI WGTACW 4 cut(s) 488, 545, 554, 595
TfiI GAWTC 4 cut(s) 42, 144, 262, 299
Tru1I TTAA 2 cut(s) 162, 183
Tru9I TTAA 2 cut(s) 162, 183
TscAI CASTG 3 cut(s) 351, 571, 686
TseI GCWGC 1 cut(s) 721
TspGWI ACGGA 1 cut(s) 259
TspRI CASTG 3 cut(s) 351, 571, 686
VspI ATTAAT 1 cut(s) 162
XapI RAATTY 2 cut(s) 472, 709
XceI RCATGY 1 cut(s) 519
XmnI GAANNNNTTC 1 cut(s) 316
XspI CTAG 3 cut(s) 549, 572, 757
ZrmI AGTACT 3 cut(s) 490, 547, 597
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.