Rh1DG341500

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0006418
Physical Location & Seq
Forward (+)
56652006 .. 56656597
4592 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG341500.1

Sequence Viewer

Length: 708 bp
ATGTTTCCTTTCCCTCATGATCATCAAAGCAAAGATTTTGAATTACAAATGTATTCGACTCCCCACCAGAAAGATTTTATGCAACAGGATCTGATCATGATGCAGGGTAGTCATGAGGTTTTGCCATCTGATCTGCAGGGACGTAGTCTATCCAATATTAATATTAGTAAAGCAAATATTAATAATATGGCTACTGATCCTGACGAAAGGAAGATCATGCGTAGGGACAATGAGCGCCAAAGAAGACAAGTTATGGCGATTCGCACTGCATCACTTCGATGCCTCCTCCCTCTTGAATTAATTAAGGGAAAACGTTCAATCTCCGAGCACATAAATGAAGCAGTGAATTATATAAAGCAGCTGAAGGAGAAGATACAGGAGCTGAATGCCAAGAAGGAAGAGCTTAGAAGGGTGTATAAACATTACAGTAGTTCTGCACATGATTTCAGTCCTGAAATTAATGAAAATTTGGGTACTAAGAGTACTTCCAATATCATGGTTGGCCCAACATGTTGGGGTGGAGTGGAGATTGTGGTAAGTACTAATAGTACAAATTGCAGTGAGCTAGAAGGGTTTTCTCTTTCAGGAGTACTCAAAGCATTGCTTGCAGAGGGCCTTACCGTTGTGGAGTGTGCTTCCACTGCAGCAAATAAGAGGTCGTTTCACTCTATTCAGTGTGAGGTATGGTTGTTGGTTCCTTTAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

235

Amino Acids

26.66

Weight (kDa)

7.09

Isoelectric Point (pI)

60.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 70 - 122 3e-06 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 313
AclWI GGATC 2 cut(s) 96, 191
AcsI RAATTY 1 cut(s) 466
AcuI CTGAAG 1 cut(s) 383
AfaI GTAC 5 cut(s) 475, 484, 541, 550, 591
AflIII ACRYGT 1 cut(s) 509
AgsI TTSAA 3 cut(s) 41, 296, 318
AluBI AGCT 4 cut(s) 361, 382, 403, 565
AluI AGCT 4 cut(s) 361, 382, 403, 565
Alw21I GWGCWC 1 cut(s) 330
AlwI GGATC 2 cut(s) 96, 191
AlwNI CAGNNNCTG 2 cut(s) 91, 382
AoxI GGCC 2 cut(s) 502, 613
ApeKI GCWGC 2 cut(s) 358, 644
ApoI RAATTY 1 cut(s) 466
ArsI GACNNNNNNTTYG 2 cut(s) 641, 673
AseI ATTAAT 4 cut(s) 159, 180, 299, 459
Asp700I GAANNNNTTC 1 cut(s) 313
AspLEI GCGC 1 cut(s) 237
AspS9I GGNCC 2 cut(s) 503, 613
BbsI GAAGAC 1 cut(s) 250
Bbv12I GWGCWC 1 cut(s) 330
BbvI GCAGC 2 cut(s) 370, 656
BccI CCATC 1 cut(s) 133
BclI TGATCA 2 cut(s) 19, 93
BfaI CTAG 1 cut(s) 566
BfmI CTRYAG 2 cut(s) 134, 642
BfoI RGCGCY 1 cut(s) 238
BisI GCNGC 2 cut(s) 359, 645
BlsI GCNGC 2 cut(s) 360, 646
BmcAI AGTACT 3 cut(s) 484, 541, 591
BmgT120I GGNCC 2 cut(s) 503, 613
BmiI GGNNCC 1 cut(s) 696
BmsI GCATC 3 cut(s) 90, 269, 278
BpiI GAAGAC 1 cut(s) 250
Bse3DI GCAATG 1 cut(s) 599
BseMI GCAATG 1 cut(s) 599
BseRI GAGGAG 1 cut(s) 275
BseXI GCAGC 2 cut(s) 370, 656
BsgI GTGCAG 1 cut(s) 420
BshFI GGCC 2 cut(s) 504, 615
BsiHKAI GWGCWC 1 cut(s) 330
BslFI GGGAC 2 cut(s) 153, 239
BsmFI GGGAC 2 cut(s) 153, 239
BsmI GAATGC 1 cut(s) 391
BsnI GGCC 2 cut(s) 504, 615
Bsp1286I GDGCHC 1 cut(s) 330
Bsp143I GATC 6 cut(s) 19, 88, 93, 130, 196, 213
BspANI GGCC 2 cut(s) 504, 615
BspHI TCATGA 3 cut(s) 16, 96, 112
BspLI GGNNCC 1 cut(s) 696
BspMAI CTGCAG 2 cut(s) 138, 646
BspPI GGATC 2 cut(s) 96, 191
BspQI GCTCTTC 1 cut(s) 393
BsrDI GCAATG 1 cut(s) 599
BssMI GATC 6 cut(s) 19, 88, 93, 130, 196, 213
Bst4CI ACNGT 2 cut(s) 428, 622
Bst6I CTCTTC 1 cut(s) 393
BstAPI GCANNNNNTGC 1 cut(s) 605
BstC8I GCNNGC 1 cut(s) 606
BstDEI CTNAG 2 cut(s) 404, 477
BstH2I RGCGCY 1 cut(s) 238
BstHHI GCGC 1 cut(s) 237
BstKTI GATC 6 cut(s) 22, 91, 96, 133, 199, 216
BstMBI GATC 6 cut(s) 19, 88, 93, 130, 196, 213
BstMWI GCNNNNNNNGC 2 cut(s) 605, 641
BstNSI RCATGY 1 cut(s) 513
BstSFI CTRYAG 2 cut(s) 134, 642
BstV1I GCAGC 2 cut(s) 370, 656
BstV2I GAAGAC 1 cut(s) 250
BstX2I RGATCY 1 cut(s) 88
BstXI CCANNNNNNTGG 2 cut(s) 496, 513
BstYI RGATCY 1 cut(s) 88
BsuRI GGCC 2 cut(s) 504, 615
BtsI GCAGTG 4 cut(s) 264, 348, 565, 639
BtsIMutI CAGTG 5 cut(s) 264, 348, 565, 639, 680
Cac8I GCNNGC 1 cut(s) 606
CaiI CAGNNNCTG 2 cut(s) 91, 382
CciI TCATGA 3 cut(s) 16, 96, 112
CfoI GCGC 1 cut(s) 237
Cfr13I GGNCC 2 cut(s) 503, 613
Csp6I GTAC 5 cut(s) 474, 483, 540, 549, 590
CviAII CATG 7 cut(s) 17, 97, 113, 217, 440, 496, 510
CviJI RGCY 7 cut(s) 191, 361, 382, 403, 504, 565, 615
CviKI_1 RGCY 7 cut(s) 191, 361, 382, 403, 504, 565, 615
CviQI GTAC 5 cut(s) 474, 483, 540, 549, 590
DdeI CTNAG 2 cut(s) 404, 477
DpnI GATC 6 cut(s) 21, 90, 95, 132, 198, 215
DpnII GATC 6 cut(s) 19, 88, 93, 130, 196, 213
DraI TTTAAA 1 cut(s) 702
Eam1104I CTCTTC 1 cut(s) 393
EarI CTCTTC 1 cut(s) 393
Eco57I CTGAAG 1 cut(s) 383
EcoO109I RGGNCCY 1 cut(s) 613
FaeI CATG 7 cut(s) 20, 100, 116, 220, 443, 499, 513
FalI AAGNNNNNCTT 2 cut(s) 588, 620
FaqI GGGAC 2 cut(s) 153, 239
FatI CATG 7 cut(s) 16, 96, 112, 216, 439, 495, 509
FbaI TGATCA 2 cut(s) 19, 93
Fnu4HI GCNGC 2 cut(s) 359, 645
Fsp4HI GCNGC 2 cut(s) 359, 645
FspBI CTAG 1 cut(s) 566
GlaI GCGC 1 cut(s) 236
GluI GCNGC 2 cut(s) 359, 645
HaeII RGCGCY 1 cut(s) 238
HaeIII GGCC 2 cut(s) 504, 615
HhaI GCGC 1 cut(s) 237
Hin1II CATG 7 cut(s) 20, 100, 116, 220, 443, 499, 513
Hin6I GCGC 1 cut(s) 235
HinP1I GCGC 1 cut(s) 235
HinfI GANTC 2 cut(s) 58, 259
Hpy188I TCNGA 3 cut(s) 93, 130, 325
Hpy188III TCNNGA 7 cut(s) 17, 97, 113, 200, 293, 452, 585
HpyAV CCTTC 4 cut(s) 358, 388, 402, 563
HpyCH4III ACNGT 2 cut(s) 428, 622
HpyCH4IV ACGT 2 cut(s) 142, 313
HpyCH4V TGCA 8 cut(s) 82, 103, 136, 269, 437, 558, 608, 644
HpyF10VI GCNNNNNNNGC 2 cut(s) 605, 641
HpyF3I CTNAG 2 cut(s) 404, 477
HpySE526I ACGT 2 cut(s) 142, 313
Hsp92II CATG 7 cut(s) 20, 100, 116, 220, 443, 499, 513
HspAI GCGC 1 cut(s) 235
Ksp22I TGATCA 2 cut(s) 19, 93
Kzo9I GATC 6 cut(s) 19, 88, 93, 130, 196, 213
LguI GCTCTTC 1 cut(s) 393
LmnI GCTCC 1 cut(s) 379
LpnPI CCDG 8 cut(s) 71, 80, 89, 122, 213, 362, 465, 570
Lsp1109I GCAGC 2 cut(s) 370, 656
LweI GCATC 3 cut(s) 90, 269, 278
MaeI CTAG 1 cut(s) 566
MaeII ACGT 2 cut(s) 142, 313
MalI GATC 6 cut(s) 21, 90, 95, 132, 198, 215
MboI GATC 6 cut(s) 19, 88, 93, 130, 196, 213
MboII GAAGA 4 cut(s) 223, 255, 382, 410
MflI RGATCY 1 cut(s) 88
MhlI GDGCHC 1 cut(s) 330
MluCI AATT 8 cut(s) 41, 296, 300, 346, 456, 466, 553, 703
MlyI GAGTC 1 cut(s) 52
MnlI CCTC 8 cut(s) 24, 109, 293, 296, 300, 604, 648, 673
MroXI GAANNNNTTC 1 cut(s) 313
MseI TTAA 7 cut(s) 159, 180, 299, 303, 459, 701, 706
MslI CAYNNNNRTG 2 cut(s) 277, 333
MspA1I CMGCKG 1 cut(s) 361
Mva1269I GAATGC 1 cut(s) 391
MwoI GCNNNNNNNGC 2 cut(s) 605, 641
NdeII GATC 6 cut(s) 19, 88, 93, 130, 196, 213
NlaIII CATG 7 cut(s) 20, 100, 116, 220, 443, 499, 513
NlaIV GGNNCC 1 cut(s) 696
NspI RCATGY 1 cut(s) 513
PacI TTAATTAA 1 cut(s) 303
PagI TCATGA 3 cut(s) 16, 96, 112
PciI ACATGT 1 cut(s) 509
PciSI GCTCTTC 1 cut(s) 393
PctI GAATGC 1 cut(s) 391
PdmI GAANNNNTTC 1 cut(s) 313
PfeI GAWTC 1 cut(s) 259
PflFI GACNNNGTC 1 cut(s) 144
PkrI GCNGC 2 cut(s) 360, 646
PleI GAGTC 1 cut(s) 52
PpsI GAGTC 1 cut(s) 52
PscI ACATGT 1 cut(s) 509
PshBI ATTAAT 4 cut(s) 159, 180, 299, 459
Psp1406I AACGTT 1 cut(s) 313
PspN4I GGNNCC 1 cut(s) 696
PspPI GGNCC 2 cut(s) 503, 613
PstI CTGCAG 2 cut(s) 138, 646
PstNI CAGNNNCTG 2 cut(s) 91, 382
PsuI RGATCY 1 cut(s) 88
PsyI GACNNNGTC 1 cut(s) 144
PvuII CAGCTG 1 cut(s) 361
RsaI GTAC 5 cut(s) 475, 484, 541, 550, 591
RsaNI GTAC 5 cut(s) 474, 483, 540, 549, 590
RseI CAYNNNNRTG 2 cut(s) 277, 333
SapI GCTCTTC 1 cut(s) 393
SaqAI TTAA 7 cut(s) 159, 180, 299, 303, 459, 701, 706
SatI GCNGC 2 cut(s) 359, 645
Sau3AI GATC 6 cut(s) 19, 88, 93, 130, 196, 213
Sau96I GGNCC 2 cut(s) 503, 613
ScaI AGTACT 3 cut(s) 484, 541, 591
SchI GAGTC 1 cut(s) 52
SduI GDGCHC 1 cut(s) 330
SetI ASST 9 cut(s) 120, 145, 316, 363, 384, 405, 567, 659, 684
SfaNI GCATC 3 cut(s) 90, 269, 278
SfcI CTRYAG 2 cut(s) 134, 642
SmiMI CAYNNNNRTG 2 cut(s) 277, 333
Sse9I AATT 8 cut(s) 41, 296, 300, 346, 456, 466, 553, 703
SspI AATATT 3 cut(s) 157, 163, 178
SspMI CTAG 1 cut(s) 566
TaaI ACNGT 2 cut(s) 428, 622
TaiI ACGT 2 cut(s) 145, 316
TaqI TCGA 2 cut(s) 56, 277
TasI AATT 8 cut(s) 41, 296, 300, 346, 456, 466, 553, 703
TatI WGTACW 4 cut(s) 482, 539, 548, 589
TfiI GAWTC 1 cut(s) 259
Tru1I TTAA 7 cut(s) 159, 180, 299, 303, 459, 701, 706
Tru9I TTAA 7 cut(s) 159, 180, 299, 303, 459, 701, 706
TscAI CASTG 5 cut(s) 271, 348, 565, 646, 680
TseI GCWGC 2 cut(s) 358, 644
TspDTI ATGAA 2 cut(s) 351, 477
TspRI CASTG 5 cut(s) 271, 348, 565, 646, 680
Tth111I GACNNNGTC 1 cut(s) 144
VspI ATTAAT 4 cut(s) 159, 180, 299, 459
XapI RAATTY 1 cut(s) 466
XceI RCATGY 1 cut(s) 513
XmnI GAANNNNTTC 1 cut(s) 313
XspI CTAG 1 cut(s) 566
ZrmI AGTACT 3 cut(s) 484, 541, 591
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.