Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0006418

Physical Location & Seq

Genomic Coordinates Reverse (-)

4477951 .. 4478922

Gene Structure 972 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026634

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGGAATTACAAATATCTTCGACTCCCCACCAAGAAGATTTTATGCAACAGGATCTGATCATGATGCGGGGTAGTCATGAGGTTTTGCCATCTGATCTGCAGGGACGTAGTCTATCCAATATTAATATTAGTGAAGCAAATATTAACAATATGGCTACTGATTCTGACGAAAGGAAGATCTTGCGTAGGGACAACGAGCGCCAAAGAAGACTAGTTATGGCGATTCGCACTGCATCACTTAGATCCCTCCTCCCTCTTGAATTAATCAAGGGAAAACGTTCAATCTCCGAGCACATAAATGAAGCAGTGAATTATATACAGCAGATGAAGGAAAAGATACAGGAGCTGAATGCCAAGAGGGAAGAGCTTAGAAGGGTGTATAAACATTACAGCAGTTCTGCACATGATTTCAGTCCTGAAATTAATGAAAATTTGGGTACTAAGAGTACTTCCAATATCATGGTTGGCCCAACATGTTGGGGTGGAGTGGAGATTGTGGTAAGTACTAATGGTACAAATTGCAGTGAGCTAGAAGGGTTTTCCCTTTCAGGAGTACTCAAAGCATTGCTTGCAGAGGGCCTTACCGTTGTGGAGTGTGCTTCCACCACAGCAAATCAGAGGTTGTTTCACTCTATTCAGTGTGAGGTCGACGATTTGGCATGTCTGGATTTGTCTGAGCTACAACTGAAACTAAATTTTTTATGCAATTCTGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

239

Amino Acids

26.7

Weight (kDa)

5.45

Isoelectric Point (pI)

59.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006418)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g28610
malus_domestica	MD00G1002600.v1.1 MD01G1191700.v1.1
prunus_persica	Prupe.2G286100_v2.0.a1
pyrus_communis	pycom01g20290 pycom07g23860
rosa_chinensis	RchiOBHm_Chr1g0368211 RchiOBHm_Chr1g0376061
rosa_laevigata	RLG00000026634 RLG00000027230
rosa_multiflora	Rmu_sc0023565.1_g000001 Rmu_ssc0000116.1_g000021
rosa_roxburghii	Rroxscaffold_4G00282410 Rroxscaffold_4G00288760
rosa_rugosa	Rorug01G0339200 Rorug01G0339300 Rorug01G0393700
rosa_samantha	Rh1AG346900 Rh1AG405100 Rh1BG309700 Rh1BG368700 Rh1CG325100 Rh1CG381600 Rh1DG341500 Rh1DG398600
rosa_wichuraiana	Rw1G030860 Rw1G035950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	648
AciI	CCGC	1 cut(s)	67
AclI	AACGTT	1 cut(s)	277
AclWI	GGATC	2 cut(s)	60, 237
AcsI	RAATTY	2 cut(s)	430, 694
AfaI	GTAC	5 cut(s)	439, 448, 505, 514, 555
AflIII	ACRYGT	1 cut(s)	473
AgsI	TTSAA	2 cut(s)	260, 282
AhlI	ACTAGT	1 cut(s)	211
AluBI	AGCT	4 cut(s)	346, 367, 529, 679
AluI	AGCT	4 cut(s)	346, 367, 529, 679
Alw21I	GWGCWC	1 cut(s)	294
AlwI	GGATC	2 cut(s)	60, 237
AlwNI	CAGNNNCTG	2 cut(s)	55, 346
AoxI	GGCC	2 cut(s)	466, 577
ApoI	RAATTY	2 cut(s)	430, 694
AseI	ATTAAT	3 cut(s)	123, 263, 423
Asp700I	GAANNNNTTC	1 cut(s)	277
AspLEI	GCGC	1 cut(s)	201
AspS9I	GGNCC	2 cut(s)	467, 577
BbsI	GAAGAC	1 cut(s)	214
Bbv12I	GWGCWC	1 cut(s)	294
BccI	CCATC	1 cut(s)	97
BclI	TGATCA	1 cut(s)	57
BcuI	ACTAGT	1 cut(s)	211
BfaI	CTAG	3 cut(s)	212, 530, 715
BfmI	CTRYAG	1 cut(s)	98
BfoI	RGCGCY	1 cut(s)	202
BglII	AGATCT	1 cut(s)	177
BmcAI	AGTACT	3 cut(s)	448, 505, 555
BmgT120I	GGNCC	2 cut(s)	467, 577
BmsI	GCATC	2 cut(s)	54, 242
BpiI	GAAGAC	1 cut(s)	214
Bse3DI	GCAATG	1 cut(s)	563
BseMI	GCAATG	1 cut(s)	563
BseMII	CTCAG	1 cut(s)	666
BseRI	GAGGAG	1 cut(s)	239
BsgI	GTGCAG	1 cut(s)	384
BshFI	GGCC	2 cut(s)	468, 579
BsiHKAI	GWGCWC	1 cut(s)	294
BslFI	GGGAC	2 cut(s)	117, 203
BsmFI	GGGAC	2 cut(s)	117, 203
BsmI	GAATGC	1 cut(s)	355
BsnI	GGCC	2 cut(s)	468, 579
Bsp1286I	GDGCHC	1 cut(s)	294
Bsp143I	GATC	5 cut(s)	52, 57, 94, 177, 242
BspACI	CCGC	1 cut(s)	67
BspANI	GGCC	2 cut(s)	468, 579
BspCNI	CTCAG	1 cut(s)	667
BspHI	TCATGA	2 cut(s)	60, 76
BspMAI	CTGCAG	1 cut(s)	102
BspPI	GGATC	2 cut(s)	60, 237
BspQI	GCTCTTC	1 cut(s)	357
BsrDI	GCAATG	1 cut(s)	563
BssMI	GATC	5 cut(s)	52, 57, 94, 177, 242
Bst4CI	ACNGT	1 cut(s)	586
Bst6I	CTCTTC	1 cut(s)	357
BstAPI	GCANNNNNTGC	1 cut(s)	569
BstC8I	GCNNGC	1 cut(s)	570
BstDEI	CTNAG	4 cut(s)	239, 368, 441, 675
BstH2I	RGCGCY	1 cut(s)	202
BstHHI	GCGC	1 cut(s)	201
BstKTI	GATC	5 cut(s)	55, 60, 97, 180, 245
BstMBI	GATC	5 cut(s)	52, 57, 94, 177, 242
BstMWI	GCNNNNNNNGC	2 cut(s)	569, 711
BstNSI	RCATGY	2 cut(s)	477, 663
BstSFI	CTRYAG	1 cut(s)	98
BstV2I	GAAGAC	1 cut(s)	214
BstX2I	RGATCY	3 cut(s)	52, 177, 242
BstXI	CCANNNNNNTGG	2 cut(s)	460, 477
BstYI	RGATCY	3 cut(s)	52, 177, 242
BsuRI	GGCC	2 cut(s)	468, 579
BtsI	GCAGTG	3 cut(s)	228, 312, 529
BtsIMutI	CAGTG	4 cut(s)	228, 312, 529, 644
Cac8I	GCNNGC	1 cut(s)	570
CaiI	CAGNNNCTG	2 cut(s)	55, 346
CciI	TCATGA	2 cut(s)	60, 76
CfoI	GCGC	1 cut(s)	201
Cfr13I	GGNCC	2 cut(s)	467, 577
Csp6I	GTAC	5 cut(s)	438, 447, 504, 513, 554
CviAII	CATG	6 cut(s)	61, 77, 404, 460, 474, 660
CviJI	RGCY	8 cut(s)	155, 346, 367, 468, 529, 579, 679, 714
CviKI_1	RGCY	8 cut(s)	155, 346, 367, 468, 529, 579, 679, 714
CviQI	GTAC	5 cut(s)	438, 447, 504, 513, 554
DdeI	CTNAG	4 cut(s)	239, 368, 441, 675
DpnI	GATC	5 cut(s)	54, 59, 96, 179, 244
DpnII	GATC	5 cut(s)	52, 57, 94, 177, 242
Eam1104I	CTCTTC	1 cut(s)	357
EarI	CTCTTC	1 cut(s)	357
EcoO109I	RGGNCCY	1 cut(s)	577
FaeI	CATG	6 cut(s)	64, 80, 407, 463, 477, 663
FalI	AAGNNNNNCTT	2 cut(s)	552, 584
FaqI	GGGAC	2 cut(s)	117, 203
FatI	CATG	6 cut(s)	60, 76, 403, 459, 473, 659
FauI	CCCGC	1 cut(s)	60
FbaI	TGATCA	1 cut(s)	57
FblI	GTMKAC	1 cut(s)	648
FspBI	CTAG	3 cut(s)	212, 530, 715
GlaI	GCGC	1 cut(s)	200
HaeII	RGCGCY	1 cut(s)	202
HaeIII	GGCC	2 cut(s)	468, 579
HhaI	GCGC	1 cut(s)	201
Hin1II	CATG	6 cut(s)	64, 80, 407, 463, 477, 663
Hin6I	GCGC	1 cut(s)	199
HinP1I	GCGC	1 cut(s)	199
HincII	GTYRAC	1 cut(s)	649
HindII	GTYRAC	1 cut(s)	649
HinfI	GANTC	3 cut(s)	22, 161, 223
Hpy166II	GTNNAC	1 cut(s)	649
Hpy188I	TCNGA	6 cut(s)	57, 94, 166, 289, 618, 676
Hpy188III	TCNNGA	6 cut(s)	61, 77, 257, 416, 549, 665
Hpy8I	GTNNAC	1 cut(s)	649
Hpy99I	CGWCG	1 cut(s)	653
HpyAV	CCTTC	3 cut(s)	322, 366, 527
HpyCH4III	ACNGT	1 cut(s)	586
HpyCH4IV	ACGT	2 cut(s)	106, 277
HpyCH4V	TGCA	7 cut(s)	46, 100, 233, 401, 522, 572, 705
HpyF10VI	GCNNNNNNNGC	2 cut(s)	569, 711
HpyF3I	CTNAG	4 cut(s)	239, 368, 441, 675
HpySE526I	ACGT	2 cut(s)	106, 277
Hsp92II	CATG	6 cut(s)	64, 80, 407, 463, 477, 663
HspAI	GCGC	1 cut(s)	199
Ksp22I	TGATCA	1 cut(s)	57
Kzo9I	GATC	5 cut(s)	52, 57, 94, 177, 242
LguI	GCTCTTC	1 cut(s)	357
LmnI	GCTCC	1 cut(s)	343
LpnPI	CCDG	7 cut(s)	35, 86, 326, 429, 534, 650, 696
LweI	GCATC	2 cut(s)	54, 242
MaeI	CTAG	3 cut(s)	212, 530, 715
MaeII	ACGT	2 cut(s)	106, 277
MalI	GATC	5 cut(s)	54, 59, 96, 179, 244
MboI	GATC	5 cut(s)	52, 57, 94, 177, 242
MboII	GAAGA	5 cut(s)	9, 47, 187, 219, 374
MflI	RGATCY	3 cut(s)	52, 177, 242
MhlI	GDGCHC	1 cut(s)	294
MluCI	AATT	8 cut(s)	5, 260, 310, 420, 430, 517, 694, 706
MlyI	GAGTC	1 cut(s)	16
MnlI	CCTC	8 cut(s)	73, 257, 260, 264, 351, 568, 612, 637
MroXI	GAANNNNTTC	1 cut(s)	277
MseI	TTAA	4 cut(s)	123, 144, 263, 423
MslI	CAYNNNNRTG	1 cut(s)	297
Mva1269I	GAATGC	1 cut(s)	355
MwoI	GCNNNNNNNGC	2 cut(s)	569, 711
NdeII	GATC	5 cut(s)	52, 57, 94, 177, 242
NlaIII	CATG	6 cut(s)	64, 80, 407, 463, 477, 663
NspI	RCATGY	2 cut(s)	477, 663
PagI	TCATGA	2 cut(s)	60, 76
PciI	ACATGT	1 cut(s)	473
PciSI	GCTCTTC	1 cut(s)	357
PctI	GAATGC	1 cut(s)	355
PdmI	GAANNNNTTC	1 cut(s)	277
PfeI	GAWTC	2 cut(s)	161, 223
PflFI	GACNNNGTC	1 cut(s)	108
PleI	GAGTC	1 cut(s)	16
PpsI	GAGTC	1 cut(s)	16
PscI	ACATGT	1 cut(s)	473
PshBI	ATTAAT	3 cut(s)	123, 263, 423
Psp1406I	AACGTT	1 cut(s)	277
PspPI	GGNCC	2 cut(s)	467, 577
PstI	CTGCAG	1 cut(s)	102
PstNI	CAGNNNCTG	2 cut(s)	55, 346
PsuI	RGATCY	3 cut(s)	52, 177, 242
PsyI	GACNNNGTC	1 cut(s)	108
RsaI	GTAC	5 cut(s)	439, 448, 505, 514, 555
RsaNI	GTAC	5 cut(s)	438, 447, 504, 513, 554
RseI	CAYNNNNRTG	1 cut(s)	297
SalI	GTCGAC	1 cut(s)	647
SapI	GCTCTTC	1 cut(s)	357
SaqAI	TTAA	4 cut(s)	123, 144, 263, 423
Sau3AI	GATC	5 cut(s)	52, 57, 94, 177, 242
Sau96I	GGNCC	2 cut(s)	467, 577
ScaI	AGTACT	3 cut(s)	448, 505, 555
SchI	GAGTC	1 cut(s)	16
SduI	GDGCHC	1 cut(s)	294
SetI	ASST	9 cut(s)	84, 109, 280, 348, 369, 531, 623, 648, 681
SfaNI	GCATC	2 cut(s)	54, 242
SfcI	CTRYAG	1 cut(s)	98
SmiMI	CAYNNNNRTG	1 cut(s)	297
SpeI	ACTAGT	1 cut(s)	211
Sse9I	AATT	8 cut(s)	5, 260, 310, 420, 430, 517, 694, 706
SsiI	CCGC	1 cut(s)	67
SspI	AATATT	3 cut(s)	121, 127, 142
SspMI	CTAG	3 cut(s)	212, 530, 715
TaaI	ACNGT	1 cut(s)	586
TaiI	ACGT	2 cut(s)	109, 280
TaqI	TCGA	2 cut(s)	20, 648
TasI	AATT	8 cut(s)	5, 260, 310, 420, 430, 517, 694, 706
TatI	WGTACW	3 cut(s)	446, 503, 553
TfiI	GAWTC	2 cut(s)	161, 223
Tru1I	TTAA	4 cut(s)	123, 144, 263, 423
Tru9I	TTAA	4 cut(s)	123, 144, 263, 423
TscAI	CASTG	4 cut(s)	235, 312, 529, 644
TspDTI	ATGAA	3 cut(s)	315, 341, 441
TspRI	CASTG	4 cut(s)	235, 312, 529, 644
Tth111I	GACNNNGTC	1 cut(s)	108
VspI	ATTAAT	3 cut(s)	123, 263, 423
XapI	RAATTY	2 cut(s)	430, 694
XceI	RCATGY	2 cut(s)	477, 663
XmiI	GTMKAC	1 cut(s)	648
XmnI	GAANNNNTTC	1 cut(s)	277
XspI	CTAG	3 cut(s)	212, 530, 715
ZrmI	AGTACT	3 cut(s)	448, 505, 555

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.