RchiOBHm_Chr1g0376061

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0006418
Physical Location & Seq
Forward (+)
63317042 .. 63317901
860 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ59973

Sequence Viewer

Length: 711 bp
ATGTTTCCTTTCCCTCATGATCATCAAAGCAAAGATATGGAATTACAAATATCTTCGAGTACTCCCCACCAAGAAGATTTTATGCAACAGGATCTGATCATGATGCGGGGTAGTCATGATGTTTTGCCATCTGATCTGCAGGGACGTAGTCTATCCAATATTAATATTAGTGAAGCAAATATTAACAATATGGCTGCTGATTCTGACGAAAGGAAGATCATGCGTAGGGACAACGAGCGCCAAAGAAGACAAGTTATGGCGATTCGCACTGCATCACTTCGATCCCTCCTCCCTCTAGAATTAATCAAGGGAAAACGTTCAATCACCGAGCACATAAATGAAGCAGTGAATTATATAAAGCAGCTGAAGGAAAAGATACAGGAGCTGAATGCCAAGAGGGAAGAGCTTAGAAGGGTGTATAAACATTACAGTAGTTCTGCACATGATTTCAGTCCTGAAATTGATGAAAATTTGGGTACTAAGAGTACTTCCAATATCATGGTTGGCCTAACATGTTGGGGTGGAGTGGAGATTGTGGCAAGTACTAATGGTACAAATTGCAGTGAGCTAGAAGGGTTTTCTCTTTCAGGAGTACTCAAAGCATTGCTTGCAGAGGGCCTTACCGTTGTGGAGTGTGCTTCCACCACAGCAAATCAGAGGTTGATTCACTCTATTCAGTGTGAGGTATGGCTGTTGGTTCCTTTAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

236

Amino Acids

26.62

Weight (kDa)

5.92

Isoelectric Point (pI)

61.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 71 - 123 5.6e-07 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 106
AclI AACGTT 1 cut(s) 316
AclWI GGATC 2 cut(s) 99, 276
AcsI RAATTY 1 cut(s) 469
AcuI CTGAAG 1 cut(s) 386
AfaI GTAC 6 cut(s) 61, 478, 487, 544, 553, 594
AflIII ACRYGT 1 cut(s) 512
AgsI TTSAA 1 cut(s) 321
AluBI AGCT 4 cut(s) 364, 385, 406, 568
AluI AGCT 4 cut(s) 364, 385, 406, 568
Alw21I GWGCWC 1 cut(s) 333
AlwI GGATC 2 cut(s) 99, 276
AlwNI CAGNNNCTG 2 cut(s) 94, 385
AoxI GGCC 2 cut(s) 505, 616
ApeKI GCWGC 2 cut(s) 194, 361
ApoI RAATTY 1 cut(s) 469
AseI ATTAAT 2 cut(s) 162, 302
Asp700I GAANNNNTTC 1 cut(s) 316
AspLEI GCGC 1 cut(s) 240
AspS9I GGNCC 1 cut(s) 616
AsuHPI GGTGA 1 cut(s) 316
BbsI GAAGAC 1 cut(s) 253
Bbv12I GWGCWC 1 cut(s) 333
BbvI GCAGC 2 cut(s) 181, 373
BccI CCATC 1 cut(s) 136
BclI TGATCA 2 cut(s) 19, 96
BfaI CTAG 2 cut(s) 296, 569
BfmI CTRYAG 1 cut(s) 137
BfoI RGCGCY 1 cut(s) 241
BisI GCNGC 2 cut(s) 195, 362
BlsI GCNGC 2 cut(s) 196, 363
BmcAI AGTACT 4 cut(s) 61, 487, 544, 594
BmgT120I GGNCC 1 cut(s) 616
BmiI GGNNCC 1 cut(s) 699
BmsI GCATC 2 cut(s) 93, 281
BpiI GAAGAC 1 cut(s) 253
Bse3DI GCAATG 1 cut(s) 602
BseMI GCAATG 1 cut(s) 602
BseRI GAGGAG 1 cut(s) 278
BseXI GCAGC 2 cut(s) 181, 373
BsgI GTGCAG 1 cut(s) 423
BshFI GGCC 2 cut(s) 507, 618
BsiHKAI GWGCWC 1 cut(s) 333
BslFI GGGAC 2 cut(s) 156, 242
BsmFI GGGAC 2 cut(s) 156, 242
BsmI GAATGC 1 cut(s) 394
BsnI GGCC 2 cut(s) 507, 618
Bsp1286I GDGCHC 1 cut(s) 333
Bsp143I GATC 6 cut(s) 19, 91, 96, 133, 216, 281
BspACI CCGC 1 cut(s) 106
BspANI GGCC 2 cut(s) 507, 618
BspHI TCATGA 3 cut(s) 16, 99, 115
BspLI GGNNCC 1 cut(s) 699
BspMAI CTGCAG 1 cut(s) 141
BspPI GGATC 2 cut(s) 99, 276
BspQI GCTCTTC 1 cut(s) 396
BsrDI GCAATG 1 cut(s) 602
BssMI GATC 6 cut(s) 19, 91, 96, 133, 216, 281
Bst4CI ACNGT 2 cut(s) 431, 625
Bst6I CTCTTC 1 cut(s) 396
BstAPI GCANNNNNTGC 1 cut(s) 608
BstC8I GCNNGC 1 cut(s) 609
BstDEI CTNAG 2 cut(s) 407, 480
BstH2I RGCGCY 1 cut(s) 241
BstHHI GCGC 1 cut(s) 240
BstKTI GATC 6 cut(s) 22, 94, 99, 136, 219, 284
BstMBI GATC 6 cut(s) 19, 91, 96, 133, 216, 281
BstMWI GCNNNNNNNGC 1 cut(s) 608
BstNSI RCATGY 1 cut(s) 516
BstSFI CTRYAG 1 cut(s) 137
BstV1I GCAGC 2 cut(s) 181, 373
BstV2I GAAGAC 1 cut(s) 253
BstX2I RGATCY 1 cut(s) 91
BstXI CCANNNNNNTGG 1 cut(s) 499
BstYI RGATCY 1 cut(s) 91
BsuRI GGCC 2 cut(s) 507, 618
BtsI GCAGTG 3 cut(s) 267, 351, 568
BtsIMutI CAGTG 4 cut(s) 267, 351, 568, 683
Cac8I GCNNGC 1 cut(s) 609
CaiI CAGNNNCTG 2 cut(s) 94, 385
CciI TCATGA 3 cut(s) 16, 99, 115
CfoI GCGC 1 cut(s) 240
Cfr13I GGNCC 1 cut(s) 616
Csp6I GTAC 6 cut(s) 60, 477, 486, 543, 552, 593
CviAII CATG 7 cut(s) 17, 100, 116, 220, 443, 499, 513
CviJI RGCY 8 cut(s) 194, 364, 385, 406, 507, 568, 618, 691
CviKI_1 RGCY 8 cut(s) 194, 364, 385, 406, 507, 568, 618, 691
CviQI GTAC 6 cut(s) 60, 477, 486, 543, 552, 593
DdeI CTNAG 2 cut(s) 407, 480
DpnI GATC 6 cut(s) 21, 93, 98, 135, 218, 283
DpnII GATC 6 cut(s) 19, 91, 96, 133, 216, 281
DraI TTTAAA 1 cut(s) 705
Eam1104I CTCTTC 1 cut(s) 396
EarI CTCTTC 1 cut(s) 396
Eco57I CTGAAG 1 cut(s) 386
EcoO109I RGGNCCY 1 cut(s) 616
FaeI CATG 7 cut(s) 20, 103, 119, 223, 446, 502, 516
FalI AAGNNNNNCTT 2 cut(s) 591, 623
FaqI GGGAC 2 cut(s) 156, 242
FatI CATG 7 cut(s) 16, 99, 115, 219, 442, 498, 512
FauI CCCGC 1 cut(s) 99
FbaI TGATCA 2 cut(s) 19, 96
Fnu4HI GCNGC 2 cut(s) 195, 362
Fsp4HI GCNGC 2 cut(s) 195, 362
FspBI CTAG 2 cut(s) 296, 569
GlaI GCGC 1 cut(s) 239
GluI GCNGC 2 cut(s) 195, 362
HaeII RGCGCY 1 cut(s) 241
HaeIII GGCC 2 cut(s) 507, 618
HhaI GCGC 1 cut(s) 240
Hin1II CATG 7 cut(s) 20, 103, 119, 223, 446, 502, 516
Hin6I GCGC 1 cut(s) 238
HinP1I GCGC 1 cut(s) 238
HinfI GANTC 3 cut(s) 200, 262, 664
HphI GGTGA 1 cut(s) 316
Hpy188I TCNGA 4 cut(s) 96, 133, 205, 657
Hpy188III TCNNGA 6 cut(s) 17, 100, 116, 296, 455, 588
HpyAV CCTTC 3 cut(s) 361, 405, 566
HpyCH4III ACNGT 2 cut(s) 431, 625
HpyCH4IV ACGT 2 cut(s) 145, 316
HpyCH4V TGCA 6 cut(s) 85, 139, 272, 440, 561, 611
HpyF10VI GCNNNNNNNGC 1 cut(s) 608
HpyF3I CTNAG 2 cut(s) 407, 480
HpySE526I ACGT 2 cut(s) 145, 316
Hsp92II CATG 7 cut(s) 20, 103, 119, 223, 446, 502, 516
HspAI GCGC 1 cut(s) 238
Ksp22I TGATCA 2 cut(s) 19, 96
Kzo9I GATC 6 cut(s) 19, 91, 96, 133, 216, 281
LguI GCTCTTC 1 cut(s) 396
LmnI GCTCC 1 cut(s) 382
LpnPI CCDG 5 cut(s) 74, 125, 365, 468, 573
Lsp1109I GCAGC 2 cut(s) 181, 373
LweI GCATC 2 cut(s) 93, 281
MaeI CTAG 2 cut(s) 296, 569
MaeII ACGT 2 cut(s) 145, 316
MalI GATC 6 cut(s) 21, 93, 98, 135, 218, 283
MboI GATC 6 cut(s) 19, 91, 96, 133, 216, 281
MboII GAAGA 5 cut(s) 45, 86, 226, 258, 413
MflI RGATCY 1 cut(s) 91
MhlI GDGCHC 1 cut(s) 333
MluCI AATT 7 cut(s) 41, 299, 349, 459, 469, 556, 706
MnlI CCTC 8 cut(s) 24, 296, 299, 303, 390, 607, 651, 676
MroXI GAANNNNTTC 1 cut(s) 316
MseI TTAA 5 cut(s) 162, 183, 302, 704, 709
MslI CAYNNNNRTG 1 cut(s) 336
MspA1I CMGCKG 1 cut(s) 364
Mva1269I GAATGC 1 cut(s) 394
MwoI GCNNNNNNNGC 1 cut(s) 608
NdeII GATC 6 cut(s) 19, 91, 96, 133, 216, 281
NlaIII CATG 7 cut(s) 20, 103, 119, 223, 446, 502, 516
NlaIV GGNNCC 1 cut(s) 699
NspI RCATGY 1 cut(s) 516
PagI TCATGA 3 cut(s) 16, 99, 115
PciI ACATGT 1 cut(s) 512
PciSI GCTCTTC 1 cut(s) 396
PctI GAATGC 1 cut(s) 394
PdmI GAANNNNTTC 1 cut(s) 316
PfeI GAWTC 3 cut(s) 200, 262, 664
PflFI GACNNNGTC 1 cut(s) 147
PkrI GCNGC 2 cut(s) 196, 363
PscI ACATGT 1 cut(s) 512
PshBI ATTAAT 2 cut(s) 162, 302
Psp1406I AACGTT 1 cut(s) 316
PspN4I GGNNCC 1 cut(s) 699
PspPI GGNCC 1 cut(s) 616
PstI CTGCAG 1 cut(s) 141
PstNI CAGNNNCTG 2 cut(s) 94, 385
PsuI RGATCY 1 cut(s) 91
PsyI GACNNNGTC 1 cut(s) 147
PvuII CAGCTG 1 cut(s) 364
RsaI GTAC 6 cut(s) 61, 478, 487, 544, 553, 594
RsaNI GTAC 6 cut(s) 60, 477, 486, 543, 552, 593
RseI CAYNNNNRTG 1 cut(s) 336
SapI GCTCTTC 1 cut(s) 396
SaqAI TTAA 5 cut(s) 162, 183, 302, 704, 709
SatI GCNGC 2 cut(s) 195, 362
Sau3AI GATC 6 cut(s) 19, 91, 96, 133, 216, 281
Sau96I GGNCC 1 cut(s) 616
ScaI AGTACT 4 cut(s) 61, 487, 544, 594
SduI GDGCHC 1 cut(s) 333
SetI ASST 8 cut(s) 148, 319, 366, 387, 408, 570, 662, 687
SfaNI GCATC 2 cut(s) 93, 281
SfcI CTRYAG 1 cut(s) 137
SmiMI CAYNNNNRTG 1 cut(s) 336
Sse9I AATT 7 cut(s) 41, 299, 349, 459, 469, 556, 706
SsiI CCGC 1 cut(s) 106
SspI AATATT 3 cut(s) 160, 166, 181
SspMI CTAG 2 cut(s) 296, 569
TaaI ACNGT 2 cut(s) 431, 625
TaiI ACGT 2 cut(s) 148, 319
TaqI TCGA 2 cut(s) 56, 280
TasI AATT 7 cut(s) 41, 299, 349, 459, 469, 556, 706
TatI WGTACW 4 cut(s) 59, 485, 542, 592
TfiI GAWTC 3 cut(s) 200, 262, 664
Tru1I TTAA 5 cut(s) 162, 183, 302, 704, 709
Tru9I TTAA 5 cut(s) 162, 183, 302, 704, 709
TscAI CASTG 4 cut(s) 274, 351, 568, 683
TseI GCWGC 2 cut(s) 194, 361
TspDTI ATGAA 2 cut(s) 354, 480
TspRI CASTG 4 cut(s) 274, 351, 568, 683
Tth111I GACNNNGTC 1 cut(s) 147
VspI ATTAAT 2 cut(s) 162, 302
XapI RAATTY 1 cut(s) 469
XbaI TCTAGA 1 cut(s) 295
XceI RCATGY 1 cut(s) 516
XmnI GAANNNNTTC 1 cut(s) 316
XspI CTAG 2 cut(s) 296, 569
ZrmI AGTACT 4 cut(s) 61, 487, 544, 594
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.