Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0023565.1

Orthogroup ID

OG0006418

Physical Location & Seq

Genomic Coordinates Forward (+)

393 .. 839

Gene Structure 447 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0023565.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

atgattaatctagctagggttttattttttgatggcggtatacagggaaaacgttcaatctccgagcacataaatgaagcagtgaattatataaagcagctgaaggagaagatacaggagctgaatgccaagaaggaagagcttagaagggtgtataaacagtacagtagttctgcacatgatttcagtcctgaaattaatgaaaatttgggtaccaagagtacttccaatatcatggttggcccaacatgttggggtggagtggagattgtggtaagtactaatagtacaaattgcagtgagctagaagggttttctctttcaggagtactcaaagcattgcttgcagagagccttaccgttgtggagtgtgcttccactgcagcaaataagaggtcgtttcactctattcagtgtgaggtatggctgttggttcctttaaattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

148

Amino Acids

16.35

Weight (kDa)

6.3

Isoelectric Point (pI)

50.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006418)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g28610
malus_domestica	MD00G1002600.v1.1 MD01G1191700.v1.1
prunus_persica	Prupe.2G286100_v2.0.a1
pyrus_communis	pycom01g20290 pycom07g23860
rosa_chinensis	RchiOBHm_Chr1g0368211 RchiOBHm_Chr1g0376061
rosa_laevigata	RLG00000026634 RLG00000027230
rosa_multiflora	Rmu_sc0023565.1_g000001 Rmu_ssc0000116.1_g000021
rosa_roxburghii	Rroxscaffold_4G00282410 Rroxscaffold_4G00288760
rosa_rugosa	Rorug01G0339200 Rorug01G0339300 Rorug01G0393700
rosa_samantha	Rh1AG346900 Rh1AG405100 Rh1BG309700 Rh1BG368700 Rh1CG325100 Rh1CG381600 Rh1DG341500 Rh1DG398600
rosa_wichuraiana	Rw1G030860 Rw1G035950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	212
AccB1I	GGYRCC	1 cut(s)	212
AccI	GTMKAC	1 cut(s)	40
AciI	CCGC	1 cut(s)	36
AclI	AACGTT	1 cut(s)	52
AcsI	RAATTY	1 cut(s)	205
AcuI	CTGAAG	1 cut(s)	122
AfaI	GTAC	6 cut(s)	164, 214, 223, 280, 289, 330
AflIII	ACRYGT	1 cut(s)	248
AgsI	TTSAA	1 cut(s)	57
AluBI	AGCT	5 cut(s)	14, 100, 121, 142, 304
AluI	AGCT	5 cut(s)	14, 100, 121, 142, 304
Alw21I	GWGCWC	1 cut(s)	69
AlwNI	CAGNNNCTG	1 cut(s)	121
AoxI	GGCC	1 cut(s)	241
ApeKI	GCWGC	2 cut(s)	97, 383
ApoI	RAATTY	1 cut(s)	205
ArsI	GACNNNNNNTTYG	2 cut(s)	380, 412
AseI	ATTAAT	2 cut(s)	6, 198
Asp700I	GAANNNNTTC	1 cut(s)	52
Asp718I	GGTACC	1 cut(s)	212
AspS9I	GGNCC	1 cut(s)	242
BanI	GGYRCC	1 cut(s)	212
Bbv12I	GWGCWC	1 cut(s)	69
BbvI	GCAGC	2 cut(s)	109, 395
BccI	CCATC	1 cut(s)	26
BfaI	CTAG	3 cut(s)	11, 15, 305
BfmI	CTRYAG	1 cut(s)	381
BisI	GCNGC	2 cut(s)	98, 384
BlsI	GCNGC	2 cut(s)	99, 385
BmcAI	AGTACT	3 cut(s)	223, 280, 330
BmgT120I	GGNCC	1 cut(s)	242
BmiI	GGNNCC	2 cut(s)	214, 435
Bse3DI	GCAATG	1 cut(s)	338
BseMI	GCAATG	1 cut(s)	338
BseXI	GCAGC	2 cut(s)	109, 395
BsgI	GTGCAG	1 cut(s)	159
BshFI	GGCC	1 cut(s)	243
BshNI	GGYRCC	1 cut(s)	212
BsiHKAI	GWGCWC	1 cut(s)	69
BsmI	GAATGC	1 cut(s)	130
BsnI	GGCC	1 cut(s)	243
Bsp1286I	GDGCHC	1 cut(s)	69
BspACI	CCGC	1 cut(s)	36
BspANI	GGCC	1 cut(s)	243
BspLI	GGNNCC	2 cut(s)	214, 435
BspMAI	CTGCAG	1 cut(s)	385
BspQI	GCTCTTC	1 cut(s)	132
BspT107I	GGYRCC	1 cut(s)	212
BsrDI	GCAATG	1 cut(s)	338
BssNAI	GTATAC	1 cut(s)	41
Bst1107I	GTATAC	1 cut(s)	41
Bst4CI	ACNGT	3 cut(s)	162, 167, 361
Bst6I	CTCTTC	1 cut(s)	132
BstAPI	GCANNNNNTGC	1 cut(s)	344
BstC8I	GCNNGC	1 cut(s)	345
BstDEI	CTNAG	1 cut(s)	143
BstMWI	GCNNNNNNNGC	2 cut(s)	344, 380
BstNSI	RCATGY	1 cut(s)	252
BstSFI	CTRYAG	1 cut(s)	381
BstV1I	GCAGC	2 cut(s)	109, 395
BstXI	CCANNNNNNTGG	2 cut(s)	235, 252
BstZ17I	GTATAC	1 cut(s)	41
BsuRI	GGCC	1 cut(s)	243
BtsI	GCAGTG	3 cut(s)	87, 304, 378
BtsIMutI	CAGTG	4 cut(s)	87, 304, 378, 419
Cac8I	GCNNGC	1 cut(s)	345
CaiI	CAGNNNCTG	1 cut(s)	121
Cfr13I	GGNCC	1 cut(s)	242
Csp6I	GTAC	6 cut(s)	163, 213, 222, 279, 288, 329
CviAII	CATG	3 cut(s)	179, 235, 249
CviJI	RGCY	8 cut(s)	14, 100, 121, 142, 243, 304, 354, 427
CviKI_1	RGCY	8 cut(s)	14, 100, 121, 142, 243, 304, 354, 427
CviQI	GTAC	6 cut(s)	163, 213, 222, 279, 288, 329
DdeI	CTNAG	1 cut(s)	143
DraI	TTTAAA	1 cut(s)	441
Eam1104I	CTCTTC	1 cut(s)	132
EarI	CTCTTC	1 cut(s)	132
Eco57I	CTGAAG	1 cut(s)	122
FaeI	CATG	3 cut(s)	182, 238, 252
FaiI	YATR	9 cut(s)	41, 71, 90, 92, 156, 180, 236, 250, 424
FalI	AAGNNNNNCTT	2 cut(s)	327, 359
FatI	CATG	3 cut(s)	178, 234, 248
FblI	GTMKAC	1 cut(s)	40
Fnu4HI	GCNGC	2 cut(s)	98, 384
Fsp4HI	GCNGC	2 cut(s)	98, 384
FspBI	CTAG	3 cut(s)	11, 15, 305
GluI	GCNGC	2 cut(s)	98, 384
HaeIII	GGCC	1 cut(s)	243
Hin1II	CATG	3 cut(s)	182, 238, 252
Hpy166II	GTNNAC	1 cut(s)	41
Hpy188I	TCNGA	1 cut(s)	64
Hpy188III	TCNNGA	2 cut(s)	191, 324
Hpy8I	GTNNAC	1 cut(s)	41
HpyAV	CCTTC	4 cut(s)	97, 127, 141, 302
HpyCH4III	ACNGT	3 cut(s)	162, 167, 361
HpyCH4IV	ACGT	1 cut(s)	52
HpyCH4V	TGCA	4 cut(s)	176, 297, 347, 383
HpyF10VI	GCNNNNNNNGC	2 cut(s)	344, 380
HpyF3I	CTNAG	1 cut(s)	143
HpySE526I	ACGT	1 cut(s)	52
Hsp92II	CATG	3 cut(s)	182, 238, 252
KpnI	GGTACC	1 cut(s)	216
LguI	GCTCTTC	1 cut(s)	132
LmnI	GCTCC	1 cut(s)	118
LpnPI	CCDG	4 cut(s)	29, 101, 204, 309
Lsp1109I	GCAGC	2 cut(s)	109, 395
MaeI	CTAG	3 cut(s)	11, 15, 305
MaeII	ACGT	1 cut(s)	52
MboII	GAAGA	2 cut(s)	121, 149
MhlI	GDGCHC	1 cut(s)	69
MluCI	AATT	5 cut(s)	85, 195, 205, 292, 442
MnlI	CCTC	2 cut(s)	387, 412
MroXI	GAANNNNTTC	1 cut(s)	52
MseI	TTAA	4 cut(s)	6, 198, 440, 445
MslI	CAYNNNNRTG	1 cut(s)	72
MspA1I	CMGCKG	1 cut(s)	100
Mva1269I	GAATGC	1 cut(s)	130
MwoI	GCNNNNNNNGC	2 cut(s)	344, 380
NlaIII	CATG	3 cut(s)	182, 238, 252
NlaIV	GGNNCC	2 cut(s)	214, 435
NspI	RCATGY	1 cut(s)	252
PciI	ACATGT	1 cut(s)	248
PciSI	GCTCTTC	1 cut(s)	132
PctI	GAATGC	1 cut(s)	130
PdmI	GAANNNNTTC	1 cut(s)	52
PkrI	GCNGC	2 cut(s)	99, 385
PscI	ACATGT	1 cut(s)	248
PshBI	ATTAAT	2 cut(s)	6, 198
Psp1406I	AACGTT	1 cut(s)	52
PspN4I	GGNNCC	2 cut(s)	214, 435
PspPI	GGNCC	1 cut(s)	242
PstI	CTGCAG	1 cut(s)	385
PstNI	CAGNNNCTG	1 cut(s)	121
PvuII	CAGCTG	1 cut(s)	100
RsaI	GTAC	6 cut(s)	164, 214, 223, 280, 289, 330
RsaNI	GTAC	6 cut(s)	163, 213, 222, 279, 288, 329
RseI	CAYNNNNRTG	1 cut(s)	72
SapI	GCTCTTC	1 cut(s)	132
SaqAI	TTAA	4 cut(s)	6, 198, 440, 445
SatI	GCNGC	2 cut(s)	98, 384
Sau96I	GGNCC	1 cut(s)	242
ScaI	AGTACT	3 cut(s)	223, 280, 330
SduI	GDGCHC	1 cut(s)	69
SetI	ASST	8 cut(s)	16, 55, 102, 123, 144, 306, 398, 423
SfcI	CTRYAG	1 cut(s)	381
SmiMI	CAYNNNNRTG	1 cut(s)	72
Sse9I	AATT	5 cut(s)	85, 195, 205, 292, 442
SsiI	CCGC	1 cut(s)	36
SspMI	CTAG	3 cut(s)	11, 15, 305
TaaI	ACNGT	3 cut(s)	162, 167, 361
TaiI	ACGT	1 cut(s)	55
TasI	AATT	5 cut(s)	85, 195, 205, 292, 442
TatI	WGTACW	5 cut(s)	162, 221, 278, 287, 328
Tru1I	TTAA	4 cut(s)	6, 198, 440, 445
Tru9I	TTAA	4 cut(s)	6, 198, 440, 445
TscAI	CASTG	4 cut(s)	87, 304, 385, 419
TseI	GCWGC	2 cut(s)	97, 383
TspDTI	ATGAA	2 cut(s)	90, 216
TspRI	CASTG	4 cut(s)	87, 304, 385, 419
VspI	ATTAAT	2 cut(s)	6, 198
XapI	RAATTY	1 cut(s)	205
XceI	RCATGY	1 cut(s)	252
XmiI	GTMKAC	1 cut(s)	40
XmnI	GAANNNNTTC	1 cut(s)	52
XspI	CTAG	3 cut(s)	11, 15, 305
ZrmI	AGTACT	3 cut(s)	223, 280, 330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.