Rorug01G0339200

ARF guanine-nucleotide exchange factor GNOM-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0001807
Physical Location & Seq
Reverse (-)
45687128 .. 45691387
4260 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0339200.1

Sequence Viewer

Length: 909 bp
ATGTCTTCCTCTGGAAACCCTCCGCAGCAGCTCTCTAGGTCTAGAATCATGTTCATCGACCACTTCGCCCCACGGCCAAATCCAACCTTGGAGTACTGGCATCTGAATCCCACCCCCAGAAGTCGTCATGATCGGAAGTGGGAGGATCTAGAATCCGACTGCCTTGTCAATATCTTTCAAAGAGTTGGTATGGAGTCAATGCTGATGTTCATCCCCTTTGTGTGCAAATCGTGGCACAAAGCTAGCCGCACTCCGGCTGTCTGGAAGAGCCTTATCTTTCCTGAAGGTATTTTTGATCCGATGAATTTTGATACTGATACTGGTAAAAATGAAGGTTATTGGTTTGATTTGTTTCTGAGGAAATTTGCTCGGGAATTTGACATTCCATGGAGTAAGTTCACTGTTCCCAAATTTGTCAACTTGGTGATCAACCGCAGCGAAGGAGGTGCTGAATTTCTCAAGCTACCTGGACTGATTTGCAGCGTATATATGTACGCCATGAAACAAATTCTGAACCACATCAAAGACAACAACTGCAGCAACTTCAAAGGGTTGCATATGGCTGATGCCTATATTACTTGCAAGGATGCGTCGGCGATGGTGAGATGTGTGCCTGAACTCAAGTACTTGTGCTTCAGGAGGGCAACACTGAGTAAGAAGAGTCTTCTCAAAATACTGCGAGGCTGCAGAGATCTTGAGGTTTTGGATGTGAGGGGTTGTACTGGTTTCAACGAGGATGACGAAGAAATATTGGAGCTTGCTTCTCATATTTCCAAGTTTATGTGTGCTGGTTCTCATCTCCAGCCTGATTTTGTTTCTGGTCGAATTATTCTGCCTTATGATGACGAAGATGATGAAGAAGAGCACAAAGAAGAGGGTCAACAAGAGAACCGAGGACAGGGCCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000278 GO:0000281 GO:0000578 GO:0000902 GO:0000910 GO:0000911 GO:0001736 GO:0001738 GO:0002009 GO:0003006 GO:0003674 GO:0005085 GO:0005086 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005829 GO:0005886 GO:0006810 GO:0006897 GO:0007049 GO:0007155 GO:0007164 GO:0007275 GO:0007389 GO:0008150 GO:0009605 GO:0009606 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009826 GO:0009880 GO:0009888 GO:0009914 GO:0009926 GO:0009942 GO:0009987 GO:0010008 GO:0010015 GO:0010053 GO:0010054 GO:0010087 GO:0010101 GO:0010102 GO:0010154 GO:0010274 GO:0010311 GO:0010540 GO:0010817 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016192 GO:0016197 GO:0019899 GO:0021700 GO:0022402 GO:0022414 GO:0022610 GO:0022622 GO:0030154 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0032506 GO:0032509 GO:0032879 GO:0032989 GO:0040007 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0046907 GO:0046983 GO:0048209 GO:0048316 GO:0048364 GO:0048468 GO:0048469 GO:0048527 GO:0048528 GO:0048589 GO:0048608 GO:0048646 GO:0048729 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051020 GO:0051049 GO:0051179 GO:0051234 GO:0051301 GO:0051641 GO:0051649 GO:0060341 GO:0060429 GO:0060560 GO:0060627 GO:0060918 GO:0061458 GO:0061640 GO:0065007 GO:0065008 GO:0065009 GO:0071554 GO:0071555 GO:0071695 GO:0071840 GO:0071944 GO:0071985 GO:0090558 GO:0090627 GO:0090696 GO:0090697 GO:0090698 GO:0097708 GO:0098588 GO:0098657 GO:0098772 GO:0098791 GO:0098805 GO:0099402 GO:1902410 GO:1903047 GO:1905392 GO:1905393
KEGG Pathways
Metabolic & Signaling
ko04144 map04144
Pfam Domains
Protein Families
Sec7 Sec7_N

Protein Analysis

302

Amino Acids

34.98

Weight (kDa)

6.02

Isoelectric Point (pI)

51.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 164
AciI CCGC 3 cut(s) 23, 247, 433
AclWI GGATC 2 cut(s) 153, 290
AcoI YGGCCR 1 cut(s) 74
AcsI RAATTY 6 cut(s) 304, 362, 374, 410, 452, 507
AcuI CTGAAG 2 cut(s) 303, 619
AfaI GTAC 4 cut(s) 95, 494, 626, 721
AfiI CCNNNNNNNGG 2 cut(s) 253, 898
AgsI TTSAA 3 cut(s) 179, 547, 730
AjnI CCWGG 1 cut(s) 466
AluBI AGCT 4 cut(s) 31, 242, 463, 757
AluI AGCT 4 cut(s) 31, 242, 463, 757
Alw21I GWGCWC 1 cut(s) 867
AlwI GGATC 2 cut(s) 153, 290
Ama87I CYCGRG 1 cut(s) 369
AoxI GGCC 2 cut(s) 74, 901
ApeKI GCWGC 6 cut(s) 25, 28, 435, 480, 537, 684
ApoI RAATTY 6 cut(s) 304, 362, 374, 410, 452, 507
AspS9I GGNCC 1 cut(s) 901
AsuHPI GGTGA 2 cut(s) 436, 613
AsuNHI GCTAGC 1 cut(s) 242
AvaI CYCGRG 1 cut(s) 369
BarI GAAGNNNNNNTAC 2 cut(s) 617, 649
BbsI GAAGAC 1 cut(s) 656
Bbv12I GWGCWC 1 cut(s) 867
BbvI GCAGC 6 cut(s) 37, 40, 447, 492, 549, 671
BccI CCATC 1 cut(s) 592
BceAI ACGGC 1 cut(s) 89
BcgI CGANNNNNNTGC 2 cut(s) 428, 462
BciT130I CCWGG 1 cut(s) 468
BclI TGATCA 1 cut(s) 426
BfaI CTAG 4 cut(s) 36, 42, 149, 243
BfmI CTRYAG 2 cut(s) 535, 685
BglII AGATCT 1 cut(s) 691
BisI GCNGC 7 cut(s) 26, 29, 247, 436, 481, 538, 685
BlsI GCNGC 7 cut(s) 27, 30, 248, 437, 482, 539, 686
BmcAI AGTACT 2 cut(s) 95, 626
Bme1390I CCNGG 1 cut(s) 468
BmeT110I CYCGRG 1 cut(s) 369
BmgT120I GGNCC 1 cut(s) 901
BmrFI CCNGG 1 cut(s) 468
BmsI GCATC 3 cut(s) 109, 556, 577
BmtI GCTAGC 1 cut(s) 246
BpiI GAAGAC 1 cut(s) 656
BpmI CTGGAG 1 cut(s) 785
BpuEI CTTGAG 3 cut(s) 443, 605, 716
BsaBI GATNNNNATC 1 cut(s) 209
BsaJI CCNNGG 4 cut(s) 71, 87, 386, 892
Bsc4I CCNNNNNNNGG 2 cut(s) 253, 898
Bse1I ACTGG 4 cut(s) 101, 325, 727, 904
Bse8I GATNNNNATC 1 cut(s) 209
BseBI CCWGG 1 cut(s) 468
BseDI CCNNGG 4 cut(s) 71, 87, 386, 892
BseGI GGATG 4 cut(s) 210, 592, 712, 742
BseJI GATNNNNATC 1 cut(s) 209
BseLI CCNNNNNNNGG 2 cut(s) 253, 898
BseMII CTCAG 2 cut(s) 347, 641
BseNI ACTGG 4 cut(s) 101, 325, 727, 904
BseXI GCAGC 6 cut(s) 37, 40, 447, 492, 549, 671
BshFI GGCC 2 cut(s) 76, 903
BsiHKAI GWGCWC 1 cut(s) 867
BsiHKCI CYCGRG 1 cut(s) 369
BsiSI CCGG 1 cut(s) 254
BslI CCNNNNNNNGG 2 cut(s) 253, 898
BsnI GGCC 2 cut(s) 76, 903
BsoBI CYCGRG 1 cut(s) 369
Bsp1286I GDGCHC 1 cut(s) 867
Bsp143I GATC 5 cut(s) 130, 145, 295, 426, 691
Bsp19I CCATGG 1 cut(s) 386
BspACI CCGC 3 cut(s) 23, 247, 433
BspANI GGCC 2 cut(s) 76, 903
BspCNI CTCAG 2 cut(s) 348, 642
BspHI TCATGA 1 cut(s) 127
BspMAI CTGCAG 2 cut(s) 539, 689
BspOI GCTAGC 1 cut(s) 246
BspPI GGATC 2 cut(s) 153, 290
BspQI GCTCTTC 2 cut(s) 260, 855
BsrI ACTGG 4 cut(s) 101, 325, 727, 904
BssECI CCNNGG 4 cut(s) 71, 87, 386, 892
BssMI GATC 5 cut(s) 130, 145, 295, 426, 691
BssT1I CCWWGG 2 cut(s) 87, 386
Bst2UI CCWGG 1 cut(s) 468
Bst4CI ACNGT 1 cut(s) 403
Bst6I CTCTTC 4 cut(s) 260, 653, 855, 867
BstC8I GCNNGC 2 cut(s) 244, 759
BstDEI CTNAG 2 cut(s) 356, 650
BstDSI CCRYGG 2 cut(s) 71, 386
BstF5I GGATG 4 cut(s) 210, 592, 712, 742
BstKTI GATC 5 cut(s) 133, 148, 298, 429, 694
BstMBI GATC 5 cut(s) 130, 145, 295, 426, 691
BstNI CCWGG 1 cut(s) 468
BstSCI CCNGG 1 cut(s) 466
BstSFI CTRYAG 2 cut(s) 535, 685
BstV1I GCAGC 6 cut(s) 37, 40, 447, 492, 549, 671
BstV2I GAAGAC 1 cut(s) 656
BstX2I RGATCY 2 cut(s) 145, 691
BstYI RGATCY 2 cut(s) 145, 691
BsuRI GGCC 2 cut(s) 76, 903
BtgI CCRYGG 2 cut(s) 71, 386
BtgZI GCGATG 1 cut(s) 611
BtsCI GGATG 4 cut(s) 210, 592, 712, 742
BtsIMutI CAGTG 2 cut(s) 399, 647
Cac8I GCNNGC 2 cut(s) 244, 759
CciI TCATGA 1 cut(s) 127
Cfr13I GGNCC 1 cut(s) 901
CseI GACGC 1 cut(s) 579
Csp6I GTAC 4 cut(s) 94, 493, 625, 720
CviAII CATG 4 cut(s) 49, 128, 387, 499
CviQI GTAC 4 cut(s) 94, 493, 625, 720
DdeI CTNAG 2 cut(s) 356, 650
DpnI GATC 5 cut(s) 132, 147, 297, 428, 693
DpnII GATC 5 cut(s) 130, 145, 295, 426, 691
DrdI GACNNNNNNGTC 1 cut(s) 164
DseDI GACNNNNNNGTC 1 cut(s) 164
EaeI YGGCCR 1 cut(s) 74
Eam1104I CTCTTC 4 cut(s) 260, 653, 855, 867
EarI CTCTTC 4 cut(s) 260, 653, 855, 867
Eco130I CCWWGG 2 cut(s) 87, 386
Eco57I CTGAAG 2 cut(s) 303, 619
Eco88I CYCGRG 1 cut(s) 369
EcoRII CCWGG 1 cut(s) 466
EcoT14I CCWWGG 2 cut(s) 87, 386
ErhI CCWWGG 2 cut(s) 87, 386
FaeI CATG 4 cut(s) 52, 131, 390, 502
FatI CATG 4 cut(s) 48, 127, 386, 498
FauNDI CATATG 1 cut(s) 558
FbaI TGATCA 1 cut(s) 426
Fnu4HI GCNGC 7 cut(s) 26, 29, 247, 436, 481, 538, 685
FokI GGATG 4 cut(s) 197, 599, 719, 749
Fsp4HI GCNGC 7 cut(s) 26, 29, 247, 436, 481, 538, 685
FspBI CTAG 4 cut(s) 36, 42, 149, 243
GluI GCNGC 7 cut(s) 26, 29, 247, 436, 481, 538, 685
GsuI CTGGAG 1 cut(s) 785
HaeIII GGCC 2 cut(s) 76, 903
HapII CCGG 1 cut(s) 254
HgaI GACGC 1 cut(s) 579
Hin1II CATG 4 cut(s) 52, 131, 390, 502
HincII GTYRAC 2 cut(s) 418, 881
HindII GTYRAC 2 cut(s) 418, 881
HinfI GANTC 5 cut(s) 45, 106, 152, 194, 661
HpaII CCGG 1 cut(s) 254
HphI GGTGA 2 cut(s) 436, 613
Hpy166II GTNNAC 3 cut(s) 399, 418, 881
Hpy188I TCNGA 6 cut(s) 105, 135, 157, 300, 357, 513
Hpy188III TCNNGA 9 cut(s) 12, 42, 128, 149, 262, 281, 371, 637, 695
Hpy8I GTNNAC 3 cut(s) 399, 418, 881
Hpy99I CGWCG 1 cut(s) 595
HpyAV CCTTC 3 cut(s) 278, 326, 434
HpyCH4III ACNGT 1 cut(s) 403
HpyCH4V TGCA 6 cut(s) 225, 480, 537, 556, 582, 687
HpyF3I CTNAG 2 cut(s) 356, 650
Hsp92II CATG 4 cut(s) 52, 131, 390, 502
Ksp22I TGATCA 1 cut(s) 426
Kzo9I GATC 5 cut(s) 130, 145, 295, 426, 691
LguI GCTCTTC 2 cut(s) 260, 855
LmnI GCTCC 1 cut(s) 754
Lsp1109I GCAGC 6 cut(s) 37, 40, 447, 492, 549, 671
LweI GCATC 3 cut(s) 109, 556, 577
MaeI CTAG 4 cut(s) 36, 42, 149, 243
MalI GATC 5 cut(s) 132, 147, 297, 428, 693
MboI GATC 5 cut(s) 130, 145, 295, 426, 691
MboII GAAGA 8 cut(s) 277, 656, 670, 755, 860, 869, 872, 884
MflI RGATCY 2 cut(s) 145, 691
MhlI GDGCHC 1 cut(s) 867
MluCI AATT 7 cut(s) 304, 362, 374, 410, 452, 507, 825
MlyI GAGTC 2 cut(s) 203, 670
MmeI TCCRAC 2 cut(s) 107, 180
MspI CCGG 1 cut(s) 254
MspR9I CCNGG 1 cut(s) 468
MvaI CCWGG 1 cut(s) 468
NcoI CCATGG 1 cut(s) 386
NdeI CATATG 1 cut(s) 558
NdeII GATC 5 cut(s) 130, 145, 295, 426, 691
NheI GCTAGC 1 cut(s) 242
NlaIII CATG 4 cut(s) 52, 131, 390, 502
PagI TCATGA 1 cut(s) 127
PciSI GCTCTTC 2 cut(s) 260, 855
PcsI WCGNNNNNNNCGW 1 cut(s) 738
PfeI GAWTC 3 cut(s) 45, 106, 152
PkrI GCNGC 7 cut(s) 27, 30, 248, 437, 482, 539, 686
PleI GAGTC 2 cut(s) 202, 669
PpsI GAGTC 2 cut(s) 202, 669
Psp6I CCWGG 1 cut(s) 466
PspGI CCWGG 1 cut(s) 466
PspPI GGNCC 1 cut(s) 901
PstI CTGCAG 2 cut(s) 539, 689
PsuI RGATCY 2 cut(s) 145, 691
RsaI GTAC 4 cut(s) 95, 494, 626, 721
RsaNI GTAC 4 cut(s) 94, 493, 625, 720
SapI GCTCTTC 2 cut(s) 260, 855
SatI GCNGC 7 cut(s) 26, 29, 247, 436, 481, 538, 685
Sau3AI GATC 5 cut(s) 130, 145, 295, 426, 691
Sau96I GGNCC 1 cut(s) 901
ScaI AGTACT 2 cut(s) 95, 626
SchI GAGTC 2 cut(s) 203, 670
ScrFI CCNGG 1 cut(s) 468
SduI GDGCHC 1 cut(s) 867
SfaNI GCATC 3 cut(s) 109, 556, 577
SfcI CTRYAG 2 cut(s) 535, 685
SmlI CTYRAG 3 cut(s) 458, 620, 695
SmoI CTYRAG 3 cut(s) 458, 620, 695
Sse9I AATT 7 cut(s) 304, 362, 374, 410, 452, 507, 825
SsiI CCGC 3 cut(s) 23, 247, 433
SspI AATATT 1 cut(s) 750
SspMI CTAG 4 cut(s) 36, 42, 149, 243
StyD4I CCNGG 1 cut(s) 466
StyI CCWWGG 2 cut(s) 87, 386
TaaI ACNGT 1 cut(s) 403
TaqI TCGA 2 cut(s) 57, 823
TasI AATT 7 cut(s) 304, 362, 374, 410, 452, 507, 825
TatI WGTACW 3 cut(s) 93, 624, 719
TauI GCSGC 1 cut(s) 249
TfiI GAWTC 3 cut(s) 45, 106, 152
TscAI CASTG 2 cut(s) 406, 654
TseI GCWGC 6 cut(s) 25, 28, 435, 480, 537, 684
TspDTI ATGAA 6 cut(s) 43, 199, 317, 345, 515, 870
TspRI CASTG 2 cut(s) 406, 654
XapI RAATTY 6 cut(s) 304, 362, 374, 410, 452, 507
XbaI TCTAGA 2 cut(s) 41, 148
XspI CTAG 4 cut(s) 36, 42, 149, 243
ZrmI AGTACT 2 cut(s) 95, 626
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.