AT1G13980

Guanine nucleotide exchange factor in Golgi transport N-terminal

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
4788463 .. 4794654
6192 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G13980.2

Sequence Viewer

Length: 4356 bp
ATGGGTCGCCTAAAGTTGCATTCTGGAATCAAGGCCATTGAGGAAGAACCTGAGGACTTTGAGTGTACTGATTCAAGTAATACAACCACTTTAGCATGCATGATTGATACGGAAATTGCTGCTGTTTTAGCGGTTATGAGAAGAAATGTAAGATGGGGAGGTCGATACATGTCTGGTGATGATCAACTAGAACACTCGTTGATTCAGTCACTTAAAGCTCTTAGAAAACAGGTGTTCTCATGGAACCAGCCGTGGCATACAATTAGTCCCATGTTGTATCTTCAGCCCTTTCTTGATGTGATACGGTCAGATGAAACTGGAGCACCAATAACCAGCATTGCTTTGTCATCAGTTTACAAGATCTTAAACCTGAATGTAATTGATCAAAATACTGCGAATATTGAAGACGCTATGCACTTGGTAGTTGATTCTGTGACAAGCTGTCGATTTGAGGTGACAGATCCTGCATCAGAAGAGGTTGTGCTAATGAAGATACTTCAGGTTCTTCTAGCATGTATGAAAAATAAAGCATCAGTTATGCTAAGCAATCAGCATGTATGCACTGTCGTCAACACTTGTTTTCGTGTTGTCCACCAAGCAGGAATGAAAGGTGAGTTATTGCAACGAGTAGCTCGCCACACGATGCATGAATTAGTGAGGTGTATCTTCTCGCATCTCCCAGATGTTGAAAGAACAGAAACTACACTTGTCAACAGAGCTGGTAGCATCAAACAAGAGAAAGCTGGAGTAGACAGTGATTATGCCATTGTGAGTAAACCAGTCGAGGATGGAAATGCTAATTCCGAGTATGATGTTGAAAATTCTATGGCAACTTTTGCAACTGGTGCTCAAAGTTTGATGGATGATGGACCAGTTGGCCCTGGAAGCAGAAAGCCGGCTTCTCCATATGATTTGCATATAATGACAGAGCCATACGGAGTCCCAAGTATGGTGGAAATTTTTCACTTCTTGTGCTCTTTGTTAAATGTGGTCGAACATGTTGGTATGGGATCCCGATCAAACACCATAGCATTTGACGAAGATGTGCCTCTGTTTGCGTTGAACTTGATCAACTCAGCCATTGAATTGGGTGGATCGTCCATCCGCCATCACCCAAGATTGTTAAGCCTAATTCAAGATGAGTTATTTCGTAACTTGATGCAGTTCGGATTGTCGATGAGCCCCCTGATTCTTTCGATGGTTTGCAGCATTGTGCTCAATTTGTATCAACATCTACGAACTGAACTCAAGTTGCAGCTTGAGGCATTCTTTTCATGTGTGATTCTAAGGCTTGCTCAAGGAAAATATGGGCCCTCGTATCAGCAGCAAGAGGTTGCTATGGAGGCTCTTGTGAATTTTTGTAGGCAGAAGAGTTTTATGGTTGAAATGTATGCCAATCTCGATTGTGATATAACTTGCAGCAACGTGTTTGAGGAGCTGTCTAATCTTCTCTCGAAGAGCACATTTCCTGTGAACTGTCCTTTGTCTGCAATGCACATTCTTGCTCTGGATGGCCTAATCGCTGTTATTCAGGGAATGGCCGAGAGGATAAGTAATGGATTGACTGGTTTGGATTTGGGTCCTGTCCATCTTGATGAGTACACGCCTTTCTGGATGGTTAAGTGTGACAACTATAGTGATCCAAATCACTGGGTTTCATTTGTCCGCAGGAGAAAATATATCAAGAGAAGGTTAATGATTGGAGCAGATCATTTTAACAGGGATCCAAAGAAGGGGTTAGAGTTTCTCCAAGGCACACATCTTTTGCCTGACAAACTCGATCCCCAAAGTGTTGCTTGCTTTTTTAGATATACTGCTGGGCTTGATAAGAACCTTGTTGGGGATTTTCTTGGAAATCATGACGAATTTTGTGTTCAAGTTCTCAATGAGTTTGCTGGGACTTTCGATTTCCAGTACATGAATCTGGATACTGCACTCCGACTCTTCTTGGAAACCTTCAGGTTGCCTGGAGAATCCCAGAAAATACAGAGAGTGCTTGAGGCGTTCTCTGAAAGATACTATATGCAATCTCCTGAGATTCTGGCCAACAAGGATGCTGCTCTTGTGTTATCATACTCTATTATCATGCTTAACACTGATCAGCACAACGTTCAAGTAAAGAAAAAGATGACAGAAGAGGATTTCATTCGCAATAATAGGCATATCAATGGAGGAAATGATCTACCTCGAGAATTCTTGTCTGAACTCTTTCACTCCATCTGCAACAATGAGATCAGGACTACTCCAGAACAAGGTGCAGGCTTTCCTGAAATGACTCCCAGCCGTTGGATTGATTTGATGCATAAATCAAAGAAAACTGCTCCATATATTCTGGCTGATTCAAGGGCTTATCTTGACCATGATATGTTTGCTATCATGTCTGGTCCAACCATTGCTGCCATATCAGTCGTTTTTGACCATGCAGAACATGAAGACGTTTACCAGACATGCATCGATGGATTCTTGGCTATAGCTAAAATTTCTGCCTGTCATCATCTTGAAGATGTGCTTGATGATCTGGTTGTCTCTCTCTGCAAATTCACAACTCTGTTGAATCCATCATCTGTTGATGAACCCGTTCTTGCATTTGGTGATGACGCAAAAGCAAGGATGGCTACTATCACAATTTTTACCATTGCAAACAAATATGGAGATTATATACGTACGGGTTGGAGGAACATATTGGACTGTATCTTACGGCTACATAAACTTGGACTTCTGCCAGCTCGTGTAGCCAGTGATGCAGCTGATGAATCAGAACATTCATCTGAGCAAGGGCAAGGAAAGCCCCTCGCGAATTCCCTATCTTCAGCTCATCTACAGTCAATGGGAACTCCGAGGAGATCTTCCGGATTGATGGGAAGATTTAGTCAGCTTCTTTCACTTGATACAGAAGAGCCAAGATCACAGCCTACTGAGCAACAGCTTGCAGCTCATCAACGAACACTTCAAACAATTCAGAAATGTCACATTGACAGCATATTTACCGAAAGCAAGTTTCTACAAGCTGAATCTTTGTTGCAGCTTGCGCGTGCTCTCATTTGGGCTGCAGGTAGGCCACAGAAAGGAACCAGTTCTCCAGAGGATGAGGATACTGCGGTTTTCTGTCTGGAATTGCTTATTGCAATCACTCTAAACAACAGAGACAGGATCGTTCTCCTATGGCAAGGCGTCTATGAACATATAGCTACAATTGCTCAGTCAACGGTGATGCCCTGCAACTTAGTGGATAAAGCTATTTTTGGTCTACTTCGGATCTGCCAGAGACTACTTCCTTATAAAGAAAGCCTAGCTGATGAGCTTTTGAGATCTCTTCAGCTTGTGCTGAAACTGGATGCACGTGTTGCAGATGCCTATTGTGAGCAAATTGCAATTGAAGTCAGCCGTCTTGTGAAAGCCAATGCTAATCACATCAGGTCTCAGGCGGGTTGGAGAACAATCACATCCTTACTCTCCATCACAGCGCGGCACCCAGAAGCTTCTGAATCAGGATTTGATGCCGTATCCTTTGTTATGTCTGAAGGAACTCACCTGTATCCAGCCAATTATGTACTCTGTGTTGATGCTGCAAGACAGTTTGCTGAATCCCGCGTGGGACAGTCCGAACGCTCTATCCGTGCCCTTGATCTAATGGGAGATTCATTAGAATTTTTGGCTAAATGGGCTCTCTCAGCTAAGGAAAACATGGGAGAAGAAGATTTCGGGAAGATGTCACAAGATATTGGGGAAATGTGGTTAAGGCTTGTTCAAGGACTAAGAAAAGTGTGTTTAGACCAGAGGGAGGATGTCCGAAACCACGCTTTACAGTCATTACAGAAGTGTTTAGGCGGAGTAGACGGAATCAACCTAGCTCATAGCATGTGGTCTCAATGCTTTGACAAAGTAATCTTCACGGTTTTGGATGACTTACTTGAGATAGCTGCTGGGTCACAGAAAGACTACCGAAACATGGAAGGCACATTGCTTCTCGCAATCAAACTTCTCTCCAAAGTGTTTCTTCAGCAACTCCAAGAGCTATCTCAGTTATCAACCTTCTGCAAGCTATGGCTCGGTGTTCTAACTCGAATGGAGAAATACATGAAAGTGAAAGTAAGAGGCAAAAAAAGCGACAAGCTACAAGAATCAGTACCAGAGCTTCTCAAAAACATATTGCTGGTGATGAAGACGAAAGGCGTGCTATTGCAAAGAAGTGCTCTTGGTGGAGATAGCTTATGGGAGCTAACATGGCTTCATGTGAATAACATTGCACCGTCTATGCGACTGGAGCTATTCCCTGATCAAGAATCCTCACAACTTGGTGATGATGAAACCGTATCGAATGGCTTATCTTCTCCTGAAAACACAACTGGTTCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000278 GO:0000281 GO:0000578 GO:0000902 GO:0000910 GO:0000911 GO:0001736 GO:0001738 GO:0002009 GO:0003006 GO:0003674 GO:0005085 GO:0005086 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005829 GO:0005886 GO:0006810 GO:0006897 GO:0007049 GO:0007155 GO:0007164 GO:0007275 GO:0007389 GO:0008150 GO:0009605 GO:0009606 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009826 GO:0009880 GO:0009888 GO:0009914 GO:0009926 GO:0009942 GO:0009987 GO:0010008 GO:0010015 GO:0010053 GO:0010054 GO:0010087 GO:0010101 GO:0010102 GO:0010154 GO:0010274 GO:0010311 GO:0010540 GO:0010817 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016192 GO:0016197 GO:0019899 GO:0021700 GO:0022402 GO:0022414 GO:0022610 GO:0022622 GO:0030154 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0032506 GO:0032509 GO:0032879 GO:0032989 GO:0040007 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0046907 GO:0046983 GO:0048209 GO:0048316 GO:0048364 GO:0048468 GO:0048469 GO:0048527 GO:0048528 GO:0048589 GO:0048608 GO:0048646 GO:0048729 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051020 GO:0051049 GO:0051179 GO:0051234 GO:0051301 GO:0051641 GO:0051649 GO:0060341 GO:0060429 GO:0060560 GO:0060627 GO:0060918 GO:0061458 GO:0061640 GO:0065007 GO:0065008 GO:0065009 GO:0071554 GO:0071555 GO:0071695 GO:0071840 GO:0071944 GO:0071985 GO:0090558 GO:0090627 GO:0090696 GO:0090697 GO:0090698 GO:0097708 GO:0098588 GO:0098657 GO:0098772 GO:0098791 GO:0098805 GO:0099402 GO:1902410 GO:1903047 GO:1905392 GO:1905393
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

1451

Amino Acids

162.62

Weight (kDa)

5.58

Isoelectric Point (pI)

55.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sec7-like_HUS PF12783 316 - 476 6.5e-39 Mon2/Sec7/BIG1-like, HUS domain
Sec7 PF01369 562 - 745 3.3e-71 Sec7 domain
TPR_28 PF23325 1245 - 1393 3.8e-16 GBF1-like, tetratrico peptide repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 3279
Acc36I ACCTGC 1 cut(s) 3041
AccB1I GGYRCC 1 cut(s) 3468
AccB7I CCANNNNNTGG 1 cut(s) 2286
AccI GTMKAC 3 cut(s) 750, 3247, 3834
AccII CGCG 4 cut(s) 2795, 3031, 3466, 3591
AccIII TCCGGA 1 cut(s) 2849
AciI CCGC 8 cut(s) 131, 1105, 1666, 3098, 3425, 3466, 3589, 3828
AclI AACGTT 1 cut(s) 2109
AcoI YGGCCR 2 cut(s) 1539, 2043
AcsI RAATTY 9 cut(s) 820, 957, 1354, 1865, 2192, 2478, 2537, 2797, 3647
AcuI CTGAAG 7 cut(s) 266, 482, 1942, 2793, 3299, 3540, 3983
AcvI CACGTG 1 cut(s) 3341
AcyI GRCGYC 1 cut(s) 3171
AfaI GTAC 6 cut(s) 67, 1601, 1916, 2665, 3552, 4128
AfiI CCNNNNNNNGG 8 cut(s) 949, 1733, 1840, 2252, 2286, 3065, 3781, 3949
AflIII ACRYGT 4 cut(s) 168, 997, 1425, 3340
AhdI GACNNNNNGTC 1 cut(s) 441
AjnI CCWGG 2 cut(s) 880, 1966
AloI GAACNNNNNNTCC 4 cut(s) 3061, 3093, 3597, 3629
Alw21I GWGCWC 7 cut(s) 325, 850, 977, 1218, 1463, 3037, 4195
Alw26I GTCTC 5 cut(s) 2530, 3138, 3259, 3423, 3870
AlwNI CAGNNNCTG 1 cut(s) 464
Ama87I CYCGRG 1 cut(s) 2187
Aor13HI TCCGGA 1 cut(s) 2849
AoxI GGCC 7 cut(s) 33, 877, 1310, 1513, 1539, 2043, 3056
ApaI GGGCCC 1 cut(s) 1314
ApoI RAATTY 9 cut(s) 820, 957, 1354, 1865, 2192, 2478, 2537, 2797, 3647
Asp700I GAANNNNTTC 4 cut(s) 960, 2208, 2577, 3073
AspLEI GCGC 2 cut(s) 3031, 3466
AspS9I GGNCC 6 cut(s) 869, 878, 1310, 1311, 1580, 2384
AsuHPI GGTGA 9 cut(s) 188, 466, 623, 1103, 2603, 3220, 3521, 4168, 4310
AvaI CYCGRG 1 cut(s) 2187
AvaII GGWCC 3 cut(s) 869, 1580, 2384
AxyI CCTNAGG 1 cut(s) 51
BaeGI GKGCMC 2 cut(s) 1314, 3622
BaeI ACNNNNGTAYC 2 cut(s) 3084, 3117
BalI TGGCCA 1 cut(s) 2045
BamHI GGATCC 2 cut(s) 1010, 1723
BanI GGYRCC 1 cut(s) 3468
BanII GRGCYC 3 cut(s) 1184, 1314, 3667
BarI GAAGNNNNNNTAC 2 cut(s) 4119, 4151
BauI CACGAG 1 cut(s) 2727
BbrPI CACGTG 1 cut(s) 3341
BbsI GAAGAC 3 cut(s) 411, 2439, 4169
Bbv12I GWGCWC 7 cut(s) 325, 850, 977, 1218, 1463, 3037, 4195
BceAI ACGGC 5 cut(s) 235, 2268, 2714, 3369, 3485
BcgI CGANNNNNNTGC 2 cut(s) 4156, 4190
BciT130I CCWGG 2 cut(s) 882, 1968
BciVI GTATCC 4 cut(s) 1921, 3085, 3514, 3546
BclI TGATCA 5 cut(s) 181, 382, 1068, 2098, 4276
BcoDI GTCTC 5 cut(s) 2530, 3138, 3259, 3423, 3870
BfaI CTAG 4 cut(s) 188, 509, 3290, 3848
BfmI CTRYAG 4 cut(s) 1633, 2469, 2819, 3048
BfuAI ACCTGC 1 cut(s) 3041
BfuI GTATCC 4 cut(s) 1921, 3085, 3514, 3546
BglII AGATCT 3 cut(s) 360, 2843, 3308
BlpI GCTNAGC 1 cut(s) 542
Bme1390I CCNGG 2 cut(s) 882, 1968
Bme18I GGWCC 3 cut(s) 869, 1580, 2384
BmeRI GACNNNNNGTC 1 cut(s) 441
BmeT110I CYCGRG 1 cut(s) 2187
BmgT120I GGNCC 6 cut(s) 869, 878, 1310, 1311, 1580, 2384
BmiI GGNNCC 7 cut(s) 245, 1012, 1312, 1581, 1725, 3070, 3470
BmrFI CCNGG 2 cut(s) 882, 1968
BmrI ACTGGG 1 cut(s) 1660
BmuI ACTGGG 1 cut(s) 1660
BpiI GAAGAC 3 cut(s) 411, 2439, 4169
BplI GAGNNNNNCTC 2 cut(s) 1991, 2023
BpmI CTGGAG 6 cut(s) 339, 765, 1989, 2229, 3063, 4283
Bpu10I CCTNAGC 1 cut(s) 3675
Bpu1102I GCTNAGC 1 cut(s) 542
BpuEI CTTGAG 5 cut(s) 1232, 1280, 1281, 2018, 3932
Bsa29I ATCGAT 1 cut(s) 2454
BsaAI YACGTR 2 cut(s) 2663, 3341
BsaBI GATNNNNATC 2 cut(s) 1015, 1644
BsaHI GRCGYC 1 cut(s) 3171
BsaI GGTCTC 2 cut(s) 3423, 3870
BsaJI CCNNGG 4 cut(s) 251, 880, 1750, 2837
BsaWI WCCGGW 1 cut(s) 2849
BsaXI ACNNNNNCTCC 2 cut(s) 3061, 3091
Bsc4I CCNNNNNNNGG 8 cut(s) 949, 1733, 1840, 2252, 2286, 3065, 3781, 3949
Bse118I RCCGGY 1 cut(s) 895
Bse21I CCTNAGG 1 cut(s) 51
Bse3DI GCAATG 6 cut(s) 336, 1497, 2391, 2634, 3959, 4242
Bse8I GATNNNNATC 2 cut(s) 1015, 1644
BseAI TCCGGA 1 cut(s) 2849
BseBI CCWGG 2 cut(s) 882, 1968
BseCI ATCGAT 1 cut(s) 2454
BseDI CCNNGG 4 cut(s) 251, 880, 1750, 2837
BseJI GATNNNNATC 2 cut(s) 1015, 1644
BseLI CCNNNNNNNGG 8 cut(s) 949, 1733, 1840, 2252, 2286, 3065, 3781, 3949
BseMI GCAATG 6 cut(s) 336, 1497, 2391, 2634, 3959, 4242
BseMII CTCAG 9 cut(s) 42, 1089, 2025, 2760, 2907, 3212, 3434, 3684, 4034
BseRI GAGGAG 2 cut(s) 1448, 2854
BseSI GKGCMC 2 cut(s) 1314, 3622
BseYI CCCAGC 4 cut(s) 1817, 1895, 2279, 3923
BsgI GTGCAG 2 cut(s) 1917, 2277
Bsh1236I CGCG 4 cut(s) 2795, 3031, 3466, 3591
BshFI GGCC 7 cut(s) 35, 879, 1312, 1515, 1541, 2045, 3058
BshNI GGYRCC 1 cut(s) 3468
BshVI ATCGAT 1 cut(s) 2454
BsiHKAI GWGCWC 7 cut(s) 325, 850, 977, 1218, 1463, 3037, 4195
BsiHKCI CYCGRG 1 cut(s) 2187
BsiSI CCGG 2 cut(s) 896, 2850
BsiWI CGTACG 1 cut(s) 2663
BslFI GGGAC 4 cut(s) 252, 926, 1912, 3609
BslI CCNNNNNNNGG 8 cut(s) 949, 1733, 1840, 2252, 2286, 3065, 3781, 3949
BsmAI GTCTC 5 cut(s) 2530, 3138, 3259, 3423, 3870
BsmFI GGGAC 4 cut(s) 252, 926, 1912, 3609
BsmI GAATGC 2 cut(s) 19, 1265
BsnI GGCC 7 cut(s) 35, 879, 1312, 1515, 1541, 2045, 3058
Bso31I GGTCTC 2 cut(s) 3423, 3870
BsoBI CYCGRG 1 cut(s) 2187
Bsp120I GGGCCC 1 cut(s) 1310
Bsp13I TCCGGA 1 cut(s) 2849
Bsp1720I GCTNAGC 1 cut(s) 542
Bsp68I TCGCGA 1 cut(s) 2795
BspACI CCGC 8 cut(s) 131, 1105, 1666, 3098, 3425, 3466, 3589, 3828
BspANI GGCC 7 cut(s) 35, 879, 1312, 1515, 1541, 2045, 3058
BspCNI CTCAG 9 cut(s) 43, 1088, 2026, 2761, 2908, 3211, 3433, 3683, 4033
BspDI ATCGAT 1 cut(s) 2454
BspEI TCCGGA 1 cut(s) 2849
BspFNI CGCG 4 cut(s) 2795, 3031, 3466, 3591
BspHI TCATGA 1 cut(s) 1858
BspLI GGNNCC 7 cut(s) 245, 1012, 1312, 1581, 1725, 3070, 3470
BspMAI CTGCAG 1 cut(s) 3052
BspMI ACCTGC 1 cut(s) 3041
BspQI GCTCTTC 2 cut(s) 1451, 2889
BspT107I GGYRCC 1 cut(s) 3468
BspTNI GGTCTC 2 cut(s) 3423, 3870
BsrDI GCAATG 6 cut(s) 336, 1497, 2391, 2634, 3959, 4242
BsrFI RCCGGY 1 cut(s) 895
BssAI RCCGGY 1 cut(s) 895
BssECI CCNNGG 4 cut(s) 251, 880, 1750, 2837
BssNI GRCGYC 1 cut(s) 3171
BssSI CACGAG 1 cut(s) 2727
BssT1I CCWWGG 1 cut(s) 1750
Bst2BI CACGAG 1 cut(s) 2727
Bst2UI CCWGG 2 cut(s) 882, 1968
Bst6I CTCTTC 7 cut(s) 468, 1364, 1451, 1949, 2130, 2889, 3318
BstACI GRCGYC 1 cut(s) 3171
BstAPI GCANNNNNTGC 3 cut(s) 836, 845, 3344
BstBAI YACGTR 2 cut(s) 2663, 3341
BstDSI CCRYGG 1 cut(s) 251
BstFNI CGCG 4 cut(s) 2795, 3031, 3466, 3591
BstHHI GCGC 2 cut(s) 3031, 3466
BstMAI GTCTC 5 cut(s) 2530, 3138, 3259, 3423, 3870
BstNI CCWGG 2 cut(s) 882, 1968
BstNSI RCATGY 7 cut(s) 99, 172, 516, 557, 1001, 2451, 3862
BstSCI CCNGG 2 cut(s) 880, 1966
BstSFI CTRYAG 4 cut(s) 1633, 2469, 2819, 3048
BstSLI GKGCMC 2 cut(s) 1314, 3622
BstSNI TACGTA 1 cut(s) 2663
BstUI CGCG 4 cut(s) 2795, 3031, 3466, 3591
BstV2I GAAGAC 3 cut(s) 411, 2439, 4169
BstX2I RGATCY 7 cut(s) 360, 460, 1010, 1723, 2843, 3255, 3308
BstXI CCANNNNNNTGG 2 cut(s) 1087, 1650
BstYI RGATCY 7 cut(s) 360, 460, 1010, 1723, 2843, 3255, 3308
Bsu15I ATCGAT 1 cut(s) 2454
Bsu36I CCTNAGG 1 cut(s) 51
BsuI GTATCC 4 cut(s) 1921, 3085, 3514, 3546
BsuRI GGCC 7 cut(s) 35, 879, 1312, 1515, 1541, 2045, 3058
BsuTUI ATCGAT 1 cut(s) 2454
BtgI CCRYGG 1 cut(s) 251
BtsIMutI CAGTG 5 cut(s) 561, 760, 1648, 2094, 2743
BtuMI TCGCGA 1 cut(s) 2795
BveI ACCTGC 1 cut(s) 3041
CaiI CAGNNNCTG 1 cut(s) 464
CciI TCATGA 1 cut(s) 1858
CfoI GCGC 2 cut(s) 3031, 3466
Cfr10I RCCGGY 1 cut(s) 895
Cfr13I GGNCC 6 cut(s) 869, 878, 1310, 1311, 1580, 2384
ClaI ATCGAT 1 cut(s) 2454
CseI GACGC 3 cut(s) 416, 2606, 3160
Csp6I GTAC 6 cut(s) 66, 1600, 1915, 2664, 3551, 4127
CspCI CAANNNNNGTGG 2 cut(s) 933, 968
CviQI GTAC 6 cut(s) 66, 1600, 1915, 2664, 3551, 4127
DriI GACNNNNNGTC 1 cut(s) 441
EaeI YGGCCR 2 cut(s) 1539, 2043
Eam1104I CTCTTC 7 cut(s) 468, 1364, 1451, 1949, 2130, 2889, 3318
Eam1105I GACNNNNNGTC 1 cut(s) 441
EarI CTCTTC 7 cut(s) 468, 1364, 1451, 1949, 2130, 2889, 3318
EciI GGCGGA 2 cut(s) 1094, 3843
Eco105I TACGTA 1 cut(s) 2663
Eco130I CCWWGG 1 cut(s) 1750
Eco24I GRGCYC 3 cut(s) 1184, 1314, 3667
Eco31I GGTCTC 2 cut(s) 3423, 3870
Eco47I GGWCC 3 cut(s) 869, 1580, 2384
Eco57I CTGAAG 7 cut(s) 266, 482, 1942, 2793, 3299, 3540, 3983
Eco72I CACGTG 1 cut(s) 3341
Eco81I CCTNAGG 1 cut(s) 51
Eco88I CYCGRG 1 cut(s) 2187
EcoO109I RGGNCCY 2 cut(s) 1311, 1580
EcoRI GAATTC 2 cut(s) 2192, 2797
EcoRII CCWGG 2 cut(s) 880, 1966
EcoT14I CCWWGG 1 cut(s) 1750
EcoT22I ATGCAT 4 cut(s) 101, 648, 2304, 2453
EcoT38I GRGCYC 3 cut(s) 1184, 1314, 3667
ErhI CCWWGG 1 cut(s) 1750
FalI AAGNNNNNCTT 6 cut(s) 1780, 1812, 2493, 2525, 3981, 4013
FaqI GGGAC 4 cut(s) 252, 926, 1912, 3609
FauI CCCGC 2 cut(s) 3418, 3596
FauNDI CATATG 1 cut(s) 907
FbaI TGATCA 5 cut(s) 181, 382, 1068, 2098, 4276
FblI GTMKAC 3 cut(s) 750, 3247, 3834
FriOI GRGCYC 3 cut(s) 1184, 1314, 3667
FspBI CTAG 4 cut(s) 188, 509, 3290, 3848
GlaI GCGC 2 cut(s) 3030, 3465
GsaI CCCAGC 4 cut(s) 1821, 1899, 2283, 3927
GsuI CTGGAG 6 cut(s) 339, 765, 1989, 2229, 3063, 4283
HaeIII GGCC 7 cut(s) 35, 879, 1312, 1515, 1541, 2045, 3058
HapII CCGG 2 cut(s) 896, 2850
HgaI GACGC 3 cut(s) 416, 2606, 3160
HhaI GCGC 2 cut(s) 3031, 3466
Hin1I GRCGYC 1 cut(s) 3171
Hin6I GCGC 2 cut(s) 3029, 3464
HinP1I GCGC 2 cut(s) 3029, 3464
HincII GTYRAC 3 cut(s) 571, 712, 3204
HindII GTYRAC 3 cut(s) 571, 712, 3204
HindIII AAGCTT 1 cut(s) 3477
HpaII CCGG 2 cut(s) 896, 2850
HphI GGTGA 9 cut(s) 188, 466, 623, 1103, 2603, 3220, 3521, 4168, 4310
HpyAV CCTTC 6 cut(s) 1683, 1726, 1966, 3515, 3947, 4042
HpyCH4IV ACGT 5 cut(s) 1425, 2109, 2436, 2662, 3340
HpySE526I ACGT 5 cut(s) 1425, 2109, 2436, 2662, 3340
Hsp92I GRCGYC 1 cut(s) 3171
HspAI GCGC 2 cut(s) 3029, 3464
Kpn2I TCCGGA 1 cut(s) 2849
KroI GCCGGC 1 cut(s) 895
KroNI GCCGGC 1 cut(s) 897
Ksp22I TGATCA 5 cut(s) 181, 382, 1068, 2098, 4276
LguI GCTCTTC 2 cut(s) 1451, 2889
LmnI GCTCC 6 cut(s) 320, 1435, 1703, 2326, 4216, 4264
MaeI CTAG 4 cut(s) 188, 509, 3290, 3848
MaeII ACGT 5 cut(s) 1425, 2109, 2436, 2662, 3340
MaeIII GTNAC 8 cut(s) 207, 433, 454, 1151, 1625, 2966, 3711, 3927
MfeI CAATTG 2 cut(s) 3192, 3372
MflI RGATCY 7 cut(s) 360, 460, 1010, 1723, 2843, 3255, 3308
MlsI TGGCCA 1 cut(s) 2045
MluNI TGGCCA 1 cut(s) 2045
MlyI GAGTC 3 cut(s) 948, 1935, 2269
MmeI TCCRAC 5 cut(s) 1963, 2267, 2411, 2651, 3410
Mox20I TGGCCA 1 cut(s) 2045
Mph1103I ATGCAT 4 cut(s) 101, 648, 2304, 2453
MroI TCCGGA 1 cut(s) 2849
MroNI GCCGGC 1 cut(s) 895
MroXI GAANNNNTTC 4 cut(s) 960, 2208, 2577, 3073
MscI TGGCCA 1 cut(s) 2045
MseI TTAA 9 cut(s) 213, 365, 983, 1124, 1620, 1694, 1716, 2091, 3737
MslI CAYNNNNRTG 3 cut(s) 1593, 2166, 4082
Msp20I TGGCCA 1 cut(s) 2045
MspA1I CMGCKG 1 cut(s) 2747
MspI CCGG 2 cut(s) 896, 2850
MspR9I CCNGG 2 cut(s) 882, 1968
MunI CAATTG 2 cut(s) 3192, 3372
Mva1269I GAATGC 2 cut(s) 19, 1265
MvaI CCWGG 2 cut(s) 882, 1968
MvnI CGCG 4 cut(s) 2795, 3031, 3466, 3591
NaeI GCCGGC 1 cut(s) 897
NdeI CATATG 1 cut(s) 907
NgoMIV GCCGGC 1 cut(s) 895
NlaIV GGNNCC 7 cut(s) 245, 1012, 1312, 1581, 1725, 3070, 3470
NmeAIII GCCGAG 1 cut(s) 1567
NmuCI GTSAC 7 cut(s) 207, 433, 454, 1625, 2966, 3711, 3927
NruI TCGCGA 1 cut(s) 2795
NsiI ATGCAT 4 cut(s) 101, 648, 2304, 2453
NspI RCATGY 7 cut(s) 99, 172, 516, 557, 1001, 2451, 3862
PaeI GCATGC 1 cut(s) 99
PaeR7I CTCGAG 1 cut(s) 2187
PagI TCATGA 1 cut(s) 1858
PciI ACATGT 2 cut(s) 168, 997
PciSI GCTCTTC 2 cut(s) 1451, 2889
PcsI WCGNNNNNNNCGW 1 cut(s) 3613
PctI GAATGC 2 cut(s) 19, 1265
PdiI GCCGGC 1 cut(s) 897
PdmI GAANNNNTTC 4 cut(s) 960, 2208, 2577, 3073
Pfl23II CGTACG 1 cut(s) 2663
PflMI CCANNNNNTGG 1 cut(s) 2286
PleI GAGTC 3 cut(s) 947, 1935, 2269
PmaCI CACGTG 1 cut(s) 3341
PmlI CACGTG 1 cut(s) 3341
PpsI GAGTC 3 cut(s) 947, 1935, 2269
Ppu21I YACGTR 2 cut(s) 2663, 3341
PpuMI RGGWCCY 1 cut(s) 1580
PscI ACATGT 2 cut(s) 168, 997
PsiI TTATAA 1 cut(s) 3279
Psp1406I AACGTT 1 cut(s) 2109
Psp5II RGGWCCY 1 cut(s) 1580
Psp6I CCWGG 2 cut(s) 880, 1966
PspCI CACGTG 1 cut(s) 3341
PspFI CCCAGC 4 cut(s) 1817, 1895, 2279, 3923
PspGI CCWGG 2 cut(s) 880, 1966
PspLI CGTACG 1 cut(s) 2663
PspN4I GGNNCC 7 cut(s) 245, 1012, 1312, 1581, 1725, 3070, 3470
PspOMI GGGCCC 1 cut(s) 1310
PspPI GGNCC 6 cut(s) 869, 878, 1310, 1311, 1580, 2384
PspPPI RGGWCCY 1 cut(s) 1580
PsrI GAACNNNNNNTAC 2 cut(s) 685, 717
PstI CTGCAG 1 cut(s) 3052
PstNI CAGNNNCTG 1 cut(s) 464
PsuI RGATCY 7 cut(s) 360, 460, 1010, 1723, 2843, 3255, 3308
PvuII CAGCTG 1 cut(s) 2747
RruI TCGCGA 1 cut(s) 2795
RsaI GTAC 6 cut(s) 67, 1601, 1916, 2665, 3552, 4128
RsaNI GTAC 6 cut(s) 66, 1600, 1915, 2664, 3551, 4127
RseI CAYNNNNRTG 3 cut(s) 1593, 2166, 4082
SapI GCTCTTC 2 cut(s) 1451, 2889
SaqAI TTAA 9 cut(s) 213, 365, 983, 1124, 1620, 1694, 1716, 2091, 3737
Sau96I GGNCC 6 cut(s) 869, 878, 1310, 1311, 1580, 2384
SchI GAGTC 3 cut(s) 948, 1935, 2269
ScrFI CCNGG 2 cut(s) 882, 1968
SfcI CTRYAG 4 cut(s) 1633, 2469, 2819, 3048
Sfr274I CTCGAG 1 cut(s) 2187
SinI GGWCC 3 cut(s) 869, 1580, 2384
SlaI CTCGAG 1 cut(s) 2187
SmiMI CAYNNNNRTG 3 cut(s) 1593, 2166, 4082
SmlI CTYRAG 6 cut(s) 1247, 1259, 1296, 1997, 2187, 3911
SmoI CTYRAG 6 cut(s) 1247, 1259, 1296, 1997, 2187, 3911
SnaBI TACGTA 1 cut(s) 2663
SphI GCATGC 1 cut(s) 99
SsiI CCGC 8 cut(s) 131, 1105, 1666, 3098, 3425, 3466, 3589, 3828
SspI AATATT 1 cut(s) 400
SspMI CTAG 4 cut(s) 188, 509, 3290, 3848
StyD4I CCNGG 2 cut(s) 880, 1966
StyI CCWWGG 1 cut(s) 1750
TaiI ACGT 5 cut(s) 1428, 2112, 2439, 2665, 3343
TatI WGTACW 4 cut(s) 65, 1599, 1914, 3550
TauI GCSGC 1 cut(s) 3469
Tru1I TTAA 9 cut(s) 213, 365, 983, 1124, 1620, 1694, 1716, 2091, 3737
Tru9I TTAA 9 cut(s) 213, 365, 983, 1124, 1620, 1694, 1716, 2091, 3737
TscAI CASTG 5 cut(s) 568, 760, 1655, 2101, 2743
TseFI GTSAC 7 cut(s) 207, 433, 454, 1625, 2966, 3711, 3927
Tsp45I GTSAC 7 cut(s) 207, 433, 454, 1625, 2966, 3711, 3927
TspGWI ACGGA 4 cut(s) 125, 951, 3605, 3852
TspRI CASTG 5 cut(s) 568, 760, 1655, 2101, 2743
Van91I CCANNNNNTGG 1 cut(s) 2286
VpaK11BI GGWCC 3 cut(s) 869, 1580, 2384
XapI RAATTY 9 cut(s) 820, 957, 1354, 1865, 2192, 2478, 2537, 2797, 3647
XceI RCATGY 7 cut(s) 99, 172, 516, 557, 1001, 2451, 3862
XhoI CTCGAG 1 cut(s) 2187
XmiI GTMKAC 3 cut(s) 750, 3247, 3834
XmnI GAANNNNTTC 4 cut(s) 960, 2208, 2577, 3073
XspI CTAG 4 cut(s) 188, 509, 3290, 3848
Zsp2I ATGCAT 4 cut(s) 101, 648, 2304, 2453
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.