Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0001807

Physical Location & Seq

Genomic Coordinates Reverse (-)

24824058 .. 24829565

Gene Structure 5508 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1138600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4416 bp

ATGGGGCGTCTGAAGCTGCAAAGTGGAATCCAGGCAATTGGGGAAGAACCTGGGGAATGTGATGCAACGTATCCTAATCATGCTACTTTAGCATGCATCATTAATTCGGAAATAGGCACTGTATTAGCGGTTATGAGGAGGAATGTGAGATGGGGAGGACGCTATATGTCTGGCGATGATCAGCTGGAACACCCTCTAATCCAGTCTTTGAAGGCACTGCGCAAGCAAATCTTTTCATGGAAGCACCATATGCATTCCGTCAATCCTTCTGAATATCTCCAGCCATTTCTGGATGTGATTAGGTCGGATGAAACTGGTGCACCAATTACTGGTGTGGCGTTGTCTTCTGTTTACAATATCTTAACACTTGATGTAATTGATCAAAATTCCTTAAATGTTGAAGATGCCATGCACTTATTAGTTGATGCGATCACTGGCTGCCGATTTGAGGTGACTGATCCTGCATCAGAAGAAGTGGTATTGATGAAGATACTGCAGGTTCTTCTAGCTTGCATGAAGAGTAAAGCATCTATTATATTGACCAATCAGCATGTTTGCACTATAGTGAACACATGTTTCCGTATTGTCCATCAAGCGGGAACAAAAGGTGAGTTGTTGCAGCGTATAGCTCGCCACACAATGCATGAACTTGTTAGATGTATTTTCTCACACCTTCCAGATGTTCAACCTGCTGAACGTGCATTGCCAAATGGAAGCAGTACCATCAATGGAGAGATTGCAGGGAAAAATAATGAGCATGCTTCTGGAAGTAGACAATTGGAGAATGGCAACATGATTTCTGAGTTTGATAATCAGCTATTATCTACAAATCCTGCTTTGAACACTTCCTCAGGTCTTGTAGAATCTGGGATGGATGAAAAGACAGCTGGTGCTTCTAGTGGGAAGGAGGCTGGTCAATATGACGTGCAACTCATGGCTGAGCCATTTGGGGTTCCCTGCATGGTGGAAATATTTAACTTCCTGTGCTCTTTATTAAATGTGGTTGAGCATATAGGAATGGGTCCCAGGTCTAATACCATAGCTTTTGATGAAGATGTACCCCTTTTTGCATTGGGTTTGGTTAATTGTGCTATAGAGTTAAGTGGGTCCTCCATTCGGCATCACCCCAAGTTATTAAGTTTGGTTCAGGATGAATTGTTTCAAAATCTGATGCAGTTTGGCCTGTCAACAAGTCCACTTATTCTTTCAATGGTATGCAGCATTGTCCTCAATCTGTATCACCATCTCCGCACTGAACTTAAGCTACAGCTTGAGGCTTTCTTTTCATGTGTGATATTGAGGCTTGTGCAAAGCAGGTATGGGGCTTCTTATCAGCAGCAGGAGGTTGCCATGGAGGCCGTTGTGGACTTCTGCCGGCAGAAAACTTTCATGGTGGAGATGTACGCGAACTTGGATTGCGACATAACATGCAATAATGTCTTTGAAGAGCTTGCTAATCTGTTGTCAAAGAGTGCATTCCCTGTTAGTTTGCCTTTGTCTTCAATTCACATTCTTGCTTTGGATGGTCTTATTGCTATTATTCAGGGAATGGCAGAGAGGGCAGGGAATGGCTCAGTTAGTGCTGTTCAGGCTCCCCCCACGAATCTTGATGAGTATACTCCATTTTGGCTGATGAAATGTGACAACTACAGTGATCCGAATCATTGGGTTCCATTTGTTCGCCGAAGAAAGCACATAAAGAGAAGGCTGATGATTGGAGCCGATCATTTTAACCATGACCCAAAGAAAGGGCTGGAGTTCCTCCAAGGAACCCATCTCTTGCCTGACAAACTTGATCCTGAAAGTGTGGCCTGTTTTTTCAGGTACACTGCTGGGTTGGACAAGAATCTTGTTGGGGATTTCCTGGGAAACCATGATGAGTTTTGCATTCAGGTTCTTAATAAATTCGCTGGTACCTTTGATTTTCAAGACATGCATTTGGATACTGCACTGCGACTGTTTCTGGAGACGTTTCGATTGCCTGGAGAATCACAAAAGATACAAAGGGTGCTTGAAGCATTCTCAGAGAGATATTATGAGCAATCACCACAAATTCTTGCTAACAAGGATGCTGCTCTCCTGTTATCATATTCAATCATAATGCTCAACACTGACCAGCACAATGTTCAGGTGAAGAAGAAGATGACAGAGGAGGATTTCATTCGGAATAATAGACACATCAATGGAGGTGATGATTTACCTCGAGAATTCCTTTCAGAGCTTTACCACTCAATATGCAAGAATGAGATCCGCACAACTCCAGAACAAGGTGCTGGTTATCCTGAAATGAACCCAAGCCGTTGGATTGATTTAATACACAAATCGAAGAAGAGTGCTCCATTCATTGTATCAGATACCAGAGCCTACCTTGACCAGGATATGTTTGCTATAATGTCAGGCCCCACAATTGCTGCCATTTCTGTGGTATTTGATCATGCAGAACATGAAGAGATTTACCAAACATGCATTGATGGATTTTTATCTGTTGCAAAGATTGCAGCGTGCTACCATCTTGAAGATGTGCTCGACGATCTGGTTGTGTCTCTTTGTAAGTTTACAACCCTTTTAAACCCATCATCTTATGAGGAACCTGTTATAGCCTTTGGTGATGACCCAAAAGCTAGAATGTCAACTGTGACAGTTTTCACGTTTGCCAATACATATGGTGATTACATTCGCACAGGCTGGAGAAATGTTCTCGAATGTATCTTAAGATTACACAAACTTGGTCTTCTGTCGGCATTTGTGGCCAGTGAAGCAGCTGGTGATTCAGAGTCTTCTGCTGACACAGGTCATGGCAAGCCCATAACCAATTCTCTATCATCTGTTCCTATGCCTCCTGTGAGTACTCCTAGGAAATCCTCTGGATTTATGGGCCGGTTTAGTCAGCTCCTATCTCTTGACACAGAGGAGCCGAGATCACAGCCTACTGAAGAAGAACTTGCTGCTCATCAGCGCACCCTTCAGACAATTCAAAAGTGCCACATTGATGGCATATTTTCAGAGAGCAAGTTTCTGCAGGCTGAATCCCTGTTACAGCTTGCACAGGCACTGATCTGGGCTGGAGGACGACCCCAGAAAGGAAGCAGCTCACCTGAGGATGAAGATACTGCAGTTTTTTGCTTGGAGTTGCTGATAGCTATTACCCTAAATAATAGGGATAGGATTATGCTTCTTTGGCAGATTGTGTATGAGCACATATCGAACATTGTTCAGTCTACTGTGATGCCTTGTGCCCTGGTAGAGAAGGCTGTTTTTGGACTTATTCAGATTTGCCAGCGGCTGCTTCCTTATAAAGAGGACCTTGCTGATGAACTCTTGCGATCATTGCAACTTGTTTTAAAGCTTGATGCTCGGGTTGCTGATGCGTACTGTGAGCAAATTACGCAGGAAGTTGGTCGCCTTGTGAAAGCAAATGCCTCTCACATAAGATCACCATTGGGGTGGCGCATAGTTACATCACTACTCTCCATTACTGCTCGGCACCTAGAAGCTTCAGAGGCTGGATTCGATGCACTGTTCTTCATTATGTCTGAAGGAACTCACTTGTTGCCTGCCAATTATGTTCTATGTGTTGATGCGTCAAGGCAGTTTGCTGAGTCTCGTGTTGGAGAGGTGGAGCGATCTGTGTGCGCACTGGATCTTATGGCAGGTTCTATTGATTGTCTAGCAAGGTGGGCCTGCGACGCTAAGCAATCTATGAATGAGGAAGTAGCTCTGAAAATGTCTCAGGATATTGGGCAAATGTGGTTGCGGCTTGTTCAGGGGTTGAGAAAAGTTTGTTTGGACCAGAGAGAAGAGGTTAGGAATCATGCGTTGTCCATCTTACGGAGGTGTTTGACTGGAGTGGATGGGATTCCTCTTCCACATGGTCTATGGTTACAGTGCTTTGACATGGTGATCTTCACAATGCTTGATGACTTGCTTGAAATTGCACAGGGACACTCCCCAAAGGAATACCGCAACATGGAAGGCACGCTTATCCTAGCCTTGAAGCTCCTGTCCAAAGTTTTTCTGGAGCTACTACCCGAGCTATCACAGCTAACAAACTTCAGCAAACTATGGCTGGGTGTTCTCAATCGAATGGAAAATTATATGAAGGTGAAAGTTGGAGGGAGAAAATGTGAGAAGCTACGGGACCAAGTGCCGGAGCTACTTAAGAACACCTTACTTGTAATGATTTTAAGGGGAGTTCTTGTGGAGAAAAGTGACGGAGGAGATGATAGCTTGTGGGAGTTGACGTGGCTACATGTAAATAAAATTGCTCCATTATTGCAGTCTGAAATTTCCCGTGATCCAATTTTAGAGCAGTCAGATACTAAGCAGCAGGGTGAATCAGGGCGAGTTTCTGATGTGACGGGCACTTTAATTCCAACTGAAACAGCTGCTGCTGAAGGTTCCAGCAGTGGAGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000278 GO:0000281 GO:0000578 GO:0000902 GO:0000910 GO:0000911 GO:0001736 GO:0001738 GO:0002009 GO:0003006 GO:0003674 GO:0005085 GO:0005086 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005829 GO:0005886 GO:0006810 GO:0006897 GO:0007049 GO:0007155 GO:0007164 GO:0007275 GO:0007389 GO:0008150 GO:0009605 GO:0009606 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009826 GO:0009880 GO:0009888 GO:0009914 GO:0009926 GO:0009942 GO:0009987 GO:0010008 GO:0010015 GO:0010053 GO:0010054 GO:0010087 GO:0010101 GO:0010102 GO:0010154 GO:0010274 GO:0010311 GO:0010540 GO:0010817 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016192 GO:0016197 GO:0019899 GO:0021700 GO:0022402 GO:0022414 GO:0022610 GO:0022622 GO:0030154 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0032506 GO:0032509 GO:0032879 GO:0032989 GO:0040007 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0046907 GO:0046983 GO:0048209 GO:0048316 GO:0048364 GO:0048468 GO:0048469 GO:0048527 GO:0048528 GO:0048589 GO:0048608 GO:0048646 GO:0048729 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051020 GO:0051049 GO:0051179 GO:0051234 GO:0051301 GO:0051641 GO:0051649 GO:0060341 GO:0060429 GO:0060560 GO:0060627 GO:0060918 GO:0061458 GO:0061640 GO:0065007 GO:0065008 GO:0065009 GO:0071554 GO:0071555 GO:0071695 GO:0071840 GO:0071944 GO:0071985 GO:0090558 GO:0090627 GO:0090696 GO:0090697 GO:0090698 GO:0097708 GO:0098588 GO:0098657 GO:0098772 GO:0098791 GO:0098805 GO:0099402 GO:1902410 GO:1903047 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

Sec7 Sec7_N

Protein Analysis

1472

Amino Acids

163.98

Weight (kDa)

5.39

Isoelectric Point (pI)

51.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sec7-like_HUS	PF12783	318 - 480	1.3e-38	Mon2/Sec7/BIG1-like, HUS domain
Sec7	PF01369	567 - 750	4.8e-72	Sec7 domain
TPR_28	PF23325	1249 - 1429	7.7e-13	GBF1-like, tetratrico peptide repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0001807)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13980 AT1G13980
fragaria_vesca	FvH4_7g07780 FvH4_7g07780 FvH4_7g07780 FvH4_7g07780 FvH4_7g07780 FvH4_7g22980 FvH4_7g22980 FvH4_7g22980 FvH4_7g22980 FvH4_7g22980 FvH4_7g22990
malus_domestica	MD01G1138600.v1.1 MD01G1138700.v1.1 MD07G1202800.v1.1
prunus_persica	Prupe.2G239100_v2.0.a1 Prupe.2G239100_v2.0.a1 Prupe.2G239200_v2.0.a1 Prupe.2G239200_v2.0.a1 Prupe.2G239200_v2.0.a1
pyrus_communis	pycom01g15930 pycom01g15940 pycom07g18980 pycom07g18990
rosa_chinensis	RchiOBHm_Chr1g0368181 RchiOBHm_Chr1g0368191
rosa_laevigata	RLG00000027231 RLG00000027232
rosa_multiflora	Rmu_sc0006033.1_g000001 Rmu_sc0006033.1_g000003
rosa_roxburghii	Rroxscaffold_4G00288810
rosa_rugosa	Rorug01G0339200 Rorug01G0339200 Rorug01G0339200
rosa_samantha	Rh1AG346700 Rh1AG346800 Rh1BG309400 Rh1BG309500 Rh1CG324800 Rh1CG324900 Rh1DG341300 Rh1DG341400
rosa_wichuraiana	Rw1G030820 Rw1G030830 Rw1G030840 Rw1G030850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	3294
Acc16I	TGCGCA	2 cut(s)	221, 3634
Acc36I	ACCTGC	4 cut(s)	487, 697, 1305, 3641
Acc65I	GGTACC	1 cut(s)	1913
AccB1I	GGYRCC	2 cut(s)	1913, 3483
AccB7I	CCANNNNNTGG	1 cut(s)	329
AccI	GTMKAC	3 cut(s)	772, 1616, 3218
AccII	CGCG	1 cut(s)	1406
AciI	CCGC	7 cut(s)	128, 596, 1249, 2251, 3280, 3754, 3961
AclWI	GGATC	6 cut(s)	452, 1649, 1790, 2242, 3648, 4289
AcoI	YGGCCR	1 cut(s)	2748
AcsI	RAATTY	5 cut(s)	385, 1904, 2052, 2207, 4284
AcuI	CTGAAG	7 cut(s)	32, 2948, 2952, 3480, 3555, 4036, 4413
AcyI	GRCGYC	1 cut(s)	7
AfaI	GTAC	7 cut(s)	721, 1059, 1403, 1826, 1915, 2848, 3371
AflII	CTTAAG	3 cut(s)	1259, 2710, 4157
AflIII	ACRYGT	2 cut(s)	572, 4249
AjiI	CACGTC	2 cut(s)	925, 4242
AjnI	CCWGG	7 cut(s)	30, 49, 1025, 1863, 1981, 2373, 3237
AleI	CACNNNNGTG	1 cut(s)	563
Alw21I	GWGCWC	5 cut(s)	322, 989, 2338, 2526, 3198
Alw26I	GTCTC	4 cut(s)	1961, 2547, 3606, 3732
Alw44I	GTGCAC	1 cut(s)	318
AlwI	GGATC	6 cut(s)	452, 1649, 1790, 2242, 3648, 4289
AlwNI	CAGNNNCTG	4 cut(s)	3052, 3283, 3503, 4388
Ama87I	CYCGRG	3 cut(s)	2202, 3354, 4028
AoxI	GGCC	7 cut(s)	1180, 1356, 1809, 2398, 2748, 2875, 3678
ApaLI	GTGCAC	1 cut(s)	318
ApoI	RAATTY	5 cut(s)	385, 1904, 2052, 2207, 4284
AseI	ATTAAT	1 cut(s)	102
Asp700I	GAANNNNTTC	2 cut(s)	1158, 1385
Asp718I	GGTACC	1 cut(s)	1913
AspA2I	CCTAGG	1 cut(s)	2852
AspLEI	GCGC	4 cut(s)	222, 2958, 3450, 3635
AspS9I	GGNCC	8 cut(s)	1022, 1107, 2399, 2875, 3301, 3678, 3787, 4138
AvaI	CYCGRG	3 cut(s)	2202, 3354, 4028
AvaII	GGWCC	5 cut(s)	1022, 1107, 3301, 3787, 4138
AvrII	CCTAGG	1 cut(s)	2852
AxyI	CCTNAGG	2 cut(s)	850, 3096
BaeGI	GKGCMC	3 cut(s)	322, 3238, 4364
BaeI	ACNNNNGTAYC	2 cut(s)	3099, 3132
BalI	TGGCCA	1 cut(s)	2750
BanI	GGYRCC	2 cut(s)	1913, 3483
BauI	CACGAG	1 cut(s)	3603
BbsI	GAAGAC	4 cut(s)	336, 1491, 2723, 2769
Bbv12I	GWGCWC	5 cut(s)	322, 989, 2338, 2526, 3198
BceAI	ACGGC	2 cut(s)	1343, 2283
BcgI	CGANNNNNNTGC	2 cut(s)	3612, 3646
BciT130I	CCWGG	7 cut(s)	32, 51, 1027, 1865, 1983, 2375, 3239
BciVI	GTATCC	2 cut(s)	81, 1936
BclI	TGATCA	3 cut(s)	178, 379, 2431
BcoDI	GTCTC	4 cut(s)	1961, 2547, 3606, 3732
BfaI	CTAG	7 cut(s)	506, 897, 2622, 2853, 3488, 3668, 3986
BfmI	CTRYAG	7 cut(s)	494, 561, 1092, 1265, 1648, 3017, 3111
BfrI	CTTAAG	3 cut(s)	1259, 2710, 4157
BfuAI	ACCTGC	4 cut(s)	487, 697, 1305, 3641
BfuI	GTATCC	2 cut(s)	81, 1936
BglI	GCCNNNNNGGC	1 cut(s)	1355
BlnI	CCTAGG	1 cut(s)	2852
BlpI	GCTNAGC	2 cut(s)	939, 3690
BmcAI	AGTACT	1 cut(s)	2848
Bme1390I	CCNGG	7 cut(s)	32, 51, 1027, 1865, 1983, 2375, 3239
Bme18I	GGWCC	5 cut(s)	1022, 1107, 3301, 3787, 4138
BmeT110I	CYCGRG	3 cut(s)	2202, 3354, 4028
BmgBI	CACGTC	2 cut(s)	925, 4242
BmgT120I	GGNCC	8 cut(s)	1022, 1107, 2399, 2875, 3301, 3678, 3787, 4138
BmrFI	CCNGG	7 cut(s)	32, 51, 1027, 1865, 1983, 2375, 3239
BoxI	GACNNNNGTC	1 cut(s)	2790
BpiI	GAAGAC	4 cut(s)	336, 1491, 2723, 2769
BpmI	CTGGAG	9 cut(s)	263, 1775, 1985, 2004, 2244, 2707, 3084, 3864, 4037
Bpu1102I	GCTNAGC	2 cut(s)	939, 3690
BpuEI	CTTGAG	1 cut(s)	1292
BsaBI	GATNNNNATC	2 cut(s)	1659, 2479
BsaHI	GRCGYC	1 cut(s)	7
BsaJI	CCNNGG	7 cut(s)	50, 1025, 1350, 1765, 1864, 2852, 3237
BsaXI	ACNNNNNCTCC	6 cut(s)	4108, 4138, 4182, 4212, 4226, 4256
Bse118I	RCCGGY	2 cut(s)	1374, 2877
Bse1I	ACTGG	7 cut(s)	202, 319, 334, 439, 2751, 3642, 3847
Bse21I	CCTNAGG	2 cut(s)	850, 3096
Bse3DI	GCAATG	2 cut(s)	701, 3326
Bse8I	GATNNNNATC	2 cut(s)	1659, 2479
BseBI	CCWGG	7 cut(s)	32, 51, 1027, 1865, 1983, 2375, 3239
BseDI	CCNNGG	7 cut(s)	50, 1025, 1350, 1765, 1864, 2852, 3237
BseGI	GGATG	9 cut(s)	298, 313, 876, 880, 1156, 1528, 2074, 3106, 3856
BseJI	GATNNNNATC	2 cut(s)	1659, 2479
BseMI	GCAATG	2 cut(s)	701, 3326
BseMII	CTCAG	8 cut(s)	792, 864, 930, 1587, 2037, 3087, 3588, 3743
BseNI	ACTGG	7 cut(s)	202, 319, 334, 439, 2751, 3642, 3847
BseRI	GAGGAG	4 cut(s)	151, 2165, 2924, 4230
BseSI	GKGCMC	3 cut(s)	322, 3238, 4364
BseYI	CCCAGC	2 cut(s)	1832, 4066
BsgI	GTGCAG	1 cut(s)	1932
Bsh1236I	CGCG	1 cut(s)	1406
BshFI	GGCC	7 cut(s)	1182, 1358, 1811, 2400, 2750, 2877, 3680
BshNI	GGYRCC	2 cut(s)	1913, 3483
BsiHKAI	GWGCWC	5 cut(s)	322, 989, 2338, 2526, 3198
BsiHKCI	CYCGRG	3 cut(s)	2202, 3354, 4028
BsiSI	CCGG	3 cut(s)	1375, 2878, 4148
BslFI	GGGAC	3 cut(s)	1008, 3954, 4151
BsmAI	GTCTC	4 cut(s)	1961, 2547, 3606, 3732
BsmBI	CGTCTC	1 cut(s)	1961
BsmFI	GGGAC	3 cut(s)	1008, 3954, 4151
BsmI	GAATGC	4 cut(s)	253, 1475, 1887, 2018
BsnI	GGCC	7 cut(s)	1182, 1358, 1811, 2400, 2750, 2877, 3680
BsoBI	CYCGRG	3 cut(s)	2202, 3354, 4028
Bsp1286I	GDGCHC	7 cut(s)	322, 989, 2338, 2526, 3198, 3238, 4364
Bsp1720I	GCTNAGC	2 cut(s)	939, 3690
Bsp19I	CCATGG	1 cut(s)	1350
BspACI	CCGC	7 cut(s)	128, 596, 1249, 2251, 3280, 3754, 3961
BspANI	GGCC	7 cut(s)	1182, 1358, 1811, 2400, 2750, 2877, 3680
BspCNI	CTCAG	8 cut(s)	793, 863, 931, 1586, 2036, 3088, 3589, 3742
BspFNI	CGCG	1 cut(s)	1406
BspMAI	CTGCAG	3 cut(s)	498, 3021, 3115
BspMI	ACCTGC	4 cut(s)	487, 697, 1305, 3641
BspPI	GGATC	6 cut(s)	452, 1649, 1790, 2242, 3648, 4289
BspQI	GCTCTTC	1 cut(s)	1440
BspT107I	GGYRCC	2 cut(s)	1913, 3483
BspTI	CTTAAG	3 cut(s)	1259, 2710, 4157
BsrDI	GCAATG	2 cut(s)	701, 3326
BsrFI	RCCGGY	2 cut(s)	1374, 2877
BsrI	ACTGG	7 cut(s)	202, 319, 334, 439, 2751, 3642, 3847
BssAI	RCCGGY	2 cut(s)	1374, 2877
BssECI	CCNNGG	7 cut(s)	50, 1025, 1350, 1765, 1864, 2852, 3237
BssNAI	GTATAC	1 cut(s)	1617
BssNI	GRCGYC	1 cut(s)	7
BssSI	CACGAG	1 cut(s)	3603
BssT1I	CCWWGG	3 cut(s)	1350, 1765, 2852
Bst1107I	GTATAC	1 cut(s)	1617
Bst2BI	CACGAG	1 cut(s)	3603
Bst2UI	CCWGG	7 cut(s)	32, 51, 1027, 1865, 1983, 2375, 3239
Bst4CI	ACNGT	9 cut(s)	121, 1652, 1959, 2635, 2641, 3223, 3374, 3519, 3885
Bst6I	CTCTTC	6 cut(s)	512, 1440, 2324, 2442, 3792, 3867
BstACI	GRCGYC	1 cut(s)	7
BstAFI	CTTAAG	3 cut(s)	1259, 2710, 4157
BstAPI	GCANNNNNTGC	2 cut(s)	250, 2495
BstDSI	CCRYGG	1 cut(s)	1350
BstENI	CCTNNNNNAGG	1 cut(s)	2372
BstF5I	GGATG	9 cut(s)	298, 313, 876, 880, 1156, 1528, 2074, 3106, 3856
BstFNI	CGCG	1 cut(s)	1406
BstHHI	GCGC	4 cut(s)	222, 2958, 3450, 3635
BstMAI	GTCTC	4 cut(s)	1961, 2547, 3606, 3732
BstNI	CCWGG	7 cut(s)	32, 51, 1027, 1865, 1983, 2375, 3239
BstNSI	RCATGY	8 cut(s)	96, 554, 576, 761, 1431, 1936, 2466, 4253
BstPAI	GACNNNNGTC	1 cut(s)	2790
BstSCI	CCNGG	7 cut(s)	30, 49, 1025, 1863, 1981, 2373, 3237
BstSFI	CTRYAG	7 cut(s)	494, 561, 1092, 1265, 1648, 3017, 3111
BstSLI	GKGCMC	3 cut(s)	322, 3238, 4364
BstUI	CGCG	1 cut(s)	1406
BstV2I	GAAGAC	4 cut(s)	336, 1491, 2723, 2769
BstX2I	RGATCY	2 cut(s)	2247, 3640
BstXI	CCANNNNNNTGG	5 cut(s)	38, 2301, 2422, 2990, 3444
BstYI	RGATCY	2 cut(s)	2247, 3640
BstZ17I	GTATAC	1 cut(s)	1617
Bsu36I	CCTNAGG	2 cut(s)	850, 3096
BsuI	GTATCC	2 cut(s)	81, 1936
BsuRI	GGCC	7 cut(s)	1182, 1358, 1811, 2400, 2750, 2877, 3680
BtgI	CCRYGG	1 cut(s)	1350
BtgZI	GCGATG	1 cut(s)	189
BtrI	CACGTC	2 cut(s)	925, 4242
BtsCI	GGATG	9 cut(s)	298, 313, 876, 880, 1156, 1528, 2074, 3106, 3856
BtsI	GCAGTG	4 cut(s)	215, 1827, 1949, 4411
BveI	ACCTGC	4 cut(s)	487, 697, 1305, 3641
CaiI	CAGNNNCTG	4 cut(s)	3052, 3283, 3503, 4388
CfoI	GCGC	4 cut(s)	222, 2958, 3450, 3635
Cfr10I	RCCGGY	2 cut(s)	1374, 2877
Cfr13I	GGNCC	8 cut(s)	1022, 1107, 2399, 2875, 3301, 3678, 3787, 4138
CseI	GACGC	3 cut(s)	168, 3570, 3695
Csp6I	GTAC	7 cut(s)	720, 1058, 1402, 1825, 1914, 2847, 3370
CspCI	CAANNNNNGTGG	2 cut(s)	1588, 1623
CviQI	GTAC	7 cut(s)	720, 1058, 1402, 1825, 1914, 2847, 3370
DraI	TTTAAA	2 cut(s)	2568, 3342
EaeI	YGGCCR	1 cut(s)	2748
Eam1104I	CTCTTC	6 cut(s)	512, 1440, 2324, 2442, 3792, 3867
EarI	CTCTTC	6 cut(s)	512, 1440, 2324, 2442, 3792, 3867
Eco130I	CCWWGG	3 cut(s)	1350, 1765, 2852
Eco47I	GGWCC	5 cut(s)	1022, 1107, 3301, 3787, 4138
Eco57I	CTGAAG	7 cut(s)	32, 2948, 2952, 3480, 3555, 4036, 4413
Eco81I	CCTNAGG	2 cut(s)	850, 3096
Eco88I	CYCGRG	3 cut(s)	2202, 3354, 4028
EcoNI	CCTNNNNNAGG	1 cut(s)	2372
EcoO109I	RGGNCCY	4 cut(s)	1022, 1107, 2399, 3301
EcoRI	GAATTC	1 cut(s)	2207
EcoRII	CCWGG	7 cut(s)	30, 49, 1025, 1863, 1981, 2373, 3237
EcoT14I	CCWWGG	3 cut(s)	1350, 1765, 2852
EcoT22I	ATGCAT	5 cut(s)	98, 255, 645, 1938, 2468
ErhI	CCWWGG	3 cut(s)	1350, 1765, 2852
Esp3I	CGTCTC	1 cut(s)	1961
FaqI	GGGAC	3 cut(s)	1008, 3954, 4151
FauI	CCCGC	1 cut(s)	589
FauNDI	CATATG	2 cut(s)	249, 2662
FbaI	TGATCA	3 cut(s)	178, 379, 2431
FblI	GTMKAC	3 cut(s)	772, 1616, 3218
FokI	GGATG	9 cut(s)	305, 320, 883, 887, 1163, 1535, 2081, 3113, 3863
FspAI	RTGCGCAY	1 cut(s)	3634
FspBI	CTAG	7 cut(s)	506, 897, 2622, 2853, 3488, 3668, 3986
FspI	TGCGCA	2 cut(s)	221, 3634
GlaI	GCGC	4 cut(s)	221, 2957, 3449, 3634
GsaI	CCCAGC	2 cut(s)	1836, 4070
GsuI	CTGGAG	9 cut(s)	263, 1775, 1985, 2004, 2244, 2707, 3084, 3864, 4037
HaeIII	GGCC	7 cut(s)	1182, 1358, 1811, 2400, 2750, 2877, 3680
HapII	CCGG	3 cut(s)	1375, 2878, 4148
HgaI	GACGC	3 cut(s)	168, 3570, 3695
HhaI	GCGC	4 cut(s)	222, 2958, 3450, 3635
Hin1I	GRCGYC	1 cut(s)	7
Hin6I	GCGC	4 cut(s)	220, 2956, 3448, 3633
HinP1I	GCGC	4 cut(s)	220, 2956, 3448, 3633
HincII	GTYRAC	3 cut(s)	1188, 2631, 4239
HindII	GTYRAC	3 cut(s)	1188, 2631, 4239
HindIII	AAGCTT	2 cut(s)	3344, 3492
HpaII	CCGG	3 cut(s)	1375, 2878, 4148
Hpy99I	CGWCG	2 cut(s)	2531, 3689
HpyCH4III	ACNGT	9 cut(s)	121, 1652, 1959, 2635, 2641, 3223, 3374, 3519, 3885
HpyCH4IV	ACGT	6 cut(s)	68, 697, 924, 1970, 2648, 4241
HpySE526I	ACGT	6 cut(s)	68, 697, 924, 1970, 2648, 4241
Hsp92I	GRCGYC	1 cut(s)	7
HspAI	GCGC	4 cut(s)	220, 2956, 3448, 3633
KflI	GGGWCCC	1 cut(s)	1022
KpnI	GGTACC	1 cut(s)	1917
KroI	GCCGGC	1 cut(s)	1374
KroNI	GCCGGC	1 cut(s)	1376
Ksp22I	TGATCA	3 cut(s)	178, 379, 2431
LguI	GCTCTTC	1 cut(s)	1440
MaeI	CTAG	7 cut(s)	506, 897, 2622, 2853, 3488, 3668, 3986
MaeII	ACGT	6 cut(s)	68, 697, 924, 1970, 2648, 4241
MaeIII	GTNAC	8 cut(s)	451, 1640, 2635, 3033, 3454, 3879, 4208, 4354
MfeI	CAATTG	3 cut(s)	36, 776, 2406
MflI	RGATCY	2 cut(s)	2247, 3640
MhlI	GDGCHC	7 cut(s)	322, 989, 2338, 2526, 3198, 3238, 4364
MlsI	TGGCCA	1 cut(s)	2750
MluNI	TGGCCA	1 cut(s)	2750
MlyI	GAGTC	2 cut(s)	2783, 3608
MmeI	TCCRAC	6 cut(s)	285, 1818, 2282, 3589, 4090, 4397
Mox20I	TGGCCA	1 cut(s)	2750
Mph1103I	ATGCAT	5 cut(s)	98, 255, 645, 1938, 2468
MroNI	GCCGGC	1 cut(s)	1374
MroXI	GAANNNNTTC	2 cut(s)	1158, 1385
MscI	TGGCCA	1 cut(s)	2750
MslI	CAYNNNNRTG	5 cut(s)	563, 2181, 2420, 2988, 3442
Msp20I	TGGCCA	1 cut(s)	2750
MspA1I	CMGCKG	5 cut(s)	184, 887, 2762, 3280, 4385
MspCI	CTTAAG	3 cut(s)	1259, 2710, 4157
MspI	CCGG	3 cut(s)	1375, 2878, 4148
MspR9I	CCNGG	7 cut(s)	32, 51, 1027, 1865, 1983, 2375, 3239
MunI	CAATTG	3 cut(s)	36, 776, 2406
Mva1269I	GAATGC	4 cut(s)	253, 1475, 1887, 2018
MvaI	CCWGG	7 cut(s)	32, 51, 1027, 1865, 1983, 2375, 3239
MvnI	CGCG	1 cut(s)	1406
NaeI	GCCGGC	1 cut(s)	1376
NcoI	CCATGG	1 cut(s)	1350
NdeI	CATATG	2 cut(s)	249, 2662
NgoMIV	GCCGGC	1 cut(s)	1374
NmeAIII	GCCGAG	2 cut(s)	2940, 3460
NmuCI	GTSAC	5 cut(s)	451, 1640, 2635, 4208, 4354
NsbI	TGCGCA	2 cut(s)	221, 3634
NsiI	ATGCAT	5 cut(s)	98, 255, 645, 1938, 2468
NspI	RCATGY	8 cut(s)	96, 554, 576, 761, 1431, 1936, 2466, 4253
OliI	CACNNNNGTG	1 cut(s)	563
PaeI	GCATGC	2 cut(s)	96, 761
PaeR7I	CTCGAG	1 cut(s)	2202
PciI	ACATGT	2 cut(s)	572, 4249
PciSI	GCTCTTC	1 cut(s)	1440
PctI	GAATGC	4 cut(s)	253, 1475, 1887, 2018
PdiI	GCCGGC	1 cut(s)	1376
PdmI	GAANNNNTTC	2 cut(s)	1158, 1385
PflMI	CCANNNNNTGG	1 cut(s)	329
PleI	GAGTC	2 cut(s)	2782, 3607
PpsI	GAGTC	2 cut(s)	2782, 3607
PpuMI	RGGWCCY	3 cut(s)	1022, 1107, 3301
PscI	ACATGT	2 cut(s)	572, 4249
PshAI	GACNNNNGTC	1 cut(s)	2790
PshBI	ATTAAT	1 cut(s)	102
PsiI	TTATAA	1 cut(s)	3294
Psp5II	RGGWCCY	3 cut(s)	1022, 1107, 3301
Psp6I	CCWGG	7 cut(s)	30, 49, 1025, 1863, 1981, 2373, 3237
PspFI	CCCAGC	2 cut(s)	1832, 4066
PspGI	CCWGG	7 cut(s)	30, 49, 1025, 1863, 1981, 2373, 3237
PspPI	GGNCC	8 cut(s)	1022, 1107, 2399, 2875, 3301, 3678, 3787, 4138
PspPPI	RGGWCCY	3 cut(s)	1022, 1107, 3301
PsrI	GAACNNNNNNTAC	2 cut(s)	1248, 1280
PstI	CTGCAG	3 cut(s)	498, 3021, 3115
PstNI	CAGNNNCTG	4 cut(s)	3052, 3283, 3503, 4388
PsuI	RGATCY	2 cut(s)	2247, 3640
PvuII	CAGCTG	4 cut(s)	184, 887, 2762, 4385
RsaI	GTAC	7 cut(s)	721, 1059, 1403, 1826, 1915, 2848, 3371
RsaNI	GTAC	7 cut(s)	720, 1058, 1402, 1825, 1914, 2847, 3370
RseI	CAYNNNNRTG	5 cut(s)	563, 2181, 2420, 2988, 3442
SapI	GCTCTTC	1 cut(s)	1440
Sau96I	GGNCC	8 cut(s)	1022, 1107, 2399, 2875, 3301, 3678, 3787, 4138
ScaI	AGTACT	1 cut(s)	2848
SchI	GAGTC	2 cut(s)	2783, 3608
ScrFI	CCNGG	7 cut(s)	32, 51, 1027, 1865, 1983, 2375, 3239
SduI	GDGCHC	7 cut(s)	322, 989, 2338, 2526, 3198, 3238, 4364
SfcI	CTRYAG	7 cut(s)	494, 561, 1092, 1265, 1648, 3017, 3111
Sfr274I	CTCGAG	1 cut(s)	2202
SinI	GGWCC	5 cut(s)	1022, 1107, 3301, 3787, 4138
SlaI	CTCGAG	1 cut(s)	2202
SmiMI	CAYNNNNRTG	5 cut(s)	563, 2181, 2420, 2988, 3442
SmlI	CTYRAG	5 cut(s)	1259, 1271, 2202, 2710, 4157
SmoI	CTYRAG	5 cut(s)	1259, 1271, 2202, 2710, 4157
SphI	GCATGC	2 cut(s)	96, 761
SsiI	CCGC	7 cut(s)	128, 596, 1249, 2251, 3280, 3754, 3961
SspI	AATATT	1 cut(s)	972
SspMI	CTAG	7 cut(s)	506, 897, 2622, 2853, 3488, 3668, 3986
StyD4I	CCNGG	7 cut(s)	30, 49, 1025, 1863, 1981, 2373, 3237
StyI	CCWWGG	3 cut(s)	1350, 1765, 2852
TaaI	ACNGT	9 cut(s)	121, 1652, 1959, 2635, 2641, 3223, 3374, 3519, 3885
TaiI	ACGT	6 cut(s)	71, 700, 927, 1973, 2651, 4244
TaqI	TCGA	8 cut(s)	1975, 2203, 2324, 2526, 2700, 3203, 3510, 4081
TatI	WGTACW	1 cut(s)	2846
TauI	GCSGC	2 cut(s)	3283, 3757
TseFI	GTSAC	5 cut(s)	451, 1640, 2635, 4208, 4354
Tsp45I	GTSAC	5 cut(s)	451, 1640, 2635, 4208, 4354
TspGWI	ACGGA	4 cut(s)	247, 569, 3844, 4227
Van91I	CCANNNNNTGG	1 cut(s)	329
Vha464I	CTTAAG	3 cut(s)	1259, 2710, 4157
VneI	GTGCAC	1 cut(s)	318
VpaK11BI	GGWCC	5 cut(s)	1022, 1107, 3301, 3787, 4138
VspI	ATTAAT	1 cut(s)	102
XagI	CCTNNNNNAGG	1 cut(s)	2372
XapI	RAATTY	5 cut(s)	385, 1904, 2052, 2207, 4284
XceI	RCATGY	8 cut(s)	96, 554, 576, 761, 1431, 1936, 2466, 4253
XcmI	CCANNNNNNNNNTGG	2 cut(s)	3873, 4012
XhoI	CTCGAG	1 cut(s)	2202
XmaJI	CCTAGG	1 cut(s)	2852
XmiI	GTMKAC	3 cut(s)	772, 1616, 3218
XmnI	GAANNNNTTC	2 cut(s)	1158, 1385
XspI	CTAG	7 cut(s)	506, 897, 2622, 2853, 3488, 3668, 3986
ZrmI	AGTACT	1 cut(s)	2848
Zsp2I	ATGCAT	5 cut(s)	98, 255, 645, 1938, 2468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.