Rh1AG346900

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0006418
Physical Location & Seq
Forward (+)
58288346 .. 58289279
934 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG346900.1

Sequence Viewer

Length: 600 bp
ATGTATTCGACTCCCCACCAAAAAGATTTTATGCAACAGGATCTGATCATGATGCGGGGTAGTCATGATGTTTTGCCATCTGATCTGCAGGGACGTAGTCTATCCAATATTAATATTAGTAAAGCAAATATTAATAATATGGCTACTGATTCTGACGAAAGGAAGATCATGCGTAGGGACAATGAGCGCCAAAGAAGACAAGTTATGGCGATTCGCACTGCATCACTTCGATCCCTCCTCCCTCTTGAATTAATTAAGGGAAAACGTTCAATCTCCGAGCACATAAATGAAGCAGTGAATTATATAAAGCAGCTGAAGGAGAAGATACAGGAGCTGAATGCCAAGAAGGAAGAGCTTAGAAGGGTGTATAAACAGTACAGTAGGTCTGCACATGATTTCAGTCCTGAAATTAATCAAAATTTGGGTACCAAGAGTACTTCCAATATCATGGTTGGCCCAACATGTTGGGGTGGAGTGGAGATTGTGAGAGCCTTACCGTTGTGGAGTGTGCTTCCACTGCTGCAAATAAGAGGTCGTTTCACTCTATTCAGTGTGAGGTCGACGATTTGGCATGTATGGATTTGTCTGAGCTACAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

199

Amino Acids

23.13

Weight (kDa)

9.95

Isoelectric Point (pI)

66.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 54 - 106 2.4e-07 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 425
AccB1I GGYRCC 1 cut(s) 425
AccI GTMKAC 1 cut(s) 560
AciI CCGC 1 cut(s) 55
AclI AACGTT 1 cut(s) 265
AclWI GGATC 2 cut(s) 48, 225
AcsI RAATTY 1 cut(s) 418
AcuI CTGAAG 1 cut(s) 335
AfaI GTAC 3 cut(s) 377, 427, 436
AflIII ACRYGT 1 cut(s) 461
AgsI TTSAA 2 cut(s) 248, 270
AluBI AGCT 4 cut(s) 313, 334, 355, 591
AluI AGCT 4 cut(s) 313, 334, 355, 591
Alw21I GWGCWC 1 cut(s) 282
AlwI GGATC 2 cut(s) 48, 225
AlwNI CAGNNNCTG 2 cut(s) 43, 334
AoxI GGCC 1 cut(s) 454
ApeKI GCWGC 2 cut(s) 310, 520
ApoI RAATTY 1 cut(s) 418
ArsI GACNNNNNNTTYG 2 cut(s) 517, 549
AseI ATTAAT 4 cut(s) 111, 132, 251, 411
Asp700I GAANNNNTTC 1 cut(s) 265
Asp718I GGTACC 1 cut(s) 425
AspLEI GCGC 1 cut(s) 189
AspS9I GGNCC 1 cut(s) 455
BanI GGYRCC 1 cut(s) 425
BbsI GAAGAC 1 cut(s) 202
Bbv12I GWGCWC 1 cut(s) 282
BbvI GCAGC 2 cut(s) 322, 507
BccI CCATC 1 cut(s) 85
BclI TGATCA 1 cut(s) 45
BfmI CTRYAG 1 cut(s) 86
BfoI RGCGCY 1 cut(s) 190
BisI GCNGC 2 cut(s) 311, 521
BlsI GCNGC 2 cut(s) 312, 522
BmcAI AGTACT 1 cut(s) 436
BmgT120I GGNCC 1 cut(s) 455
BmiI GGNNCC 1 cut(s) 427
BmsI GCATC 2 cut(s) 42, 230
BpiI GAAGAC 1 cut(s) 202
BseMII CTCAG 1 cut(s) 578
BseRI GAGGAG 1 cut(s) 227
BseXI GCAGC 2 cut(s) 322, 507
BsgI GTGCAG 1 cut(s) 372
BshFI GGCC 1 cut(s) 456
BshNI GGYRCC 1 cut(s) 425
BsiHKAI GWGCWC 1 cut(s) 282
BslFI GGGAC 2 cut(s) 105, 191
BsmFI GGGAC 2 cut(s) 105, 191
BsmI GAATGC 1 cut(s) 343
BsnI GGCC 1 cut(s) 456
Bsp1286I GDGCHC 1 cut(s) 282
Bsp143I GATC 5 cut(s) 40, 45, 82, 165, 230
BspACI CCGC 1 cut(s) 55
BspANI GGCC 1 cut(s) 456
BspCNI CTCAG 1 cut(s) 579
BspHI TCATGA 2 cut(s) 48, 64
BspLI GGNNCC 1 cut(s) 427
BspMAI CTGCAG 1 cut(s) 90
BspPI GGATC 2 cut(s) 48, 225
BspQI GCTCTTC 1 cut(s) 345
BspT107I GGYRCC 1 cut(s) 425
BssMI GATC 5 cut(s) 40, 45, 82, 165, 230
Bst4CI ACNGT 3 cut(s) 375, 380, 498
Bst6I CTCTTC 1 cut(s) 345
BstDEI CTNAG 2 cut(s) 356, 587
BstH2I RGCGCY 1 cut(s) 190
BstHHI GCGC 1 cut(s) 189
BstKTI GATC 5 cut(s) 43, 48, 85, 168, 233
BstMBI GATC 5 cut(s) 40, 45, 82, 165, 230
BstMWI GCNNNNNNNGC 1 cut(s) 517
BstNSI RCATGY 2 cut(s) 465, 575
BstSFI CTRYAG 1 cut(s) 86
BstV1I GCAGC 2 cut(s) 322, 507
BstV2I GAAGAC 1 cut(s) 202
BstX2I RGATCY 1 cut(s) 40
BstXI CCANNNNNNTGG 2 cut(s) 448, 465
BstYI RGATCY 1 cut(s) 40
BsuRI GGCC 1 cut(s) 456
BtsI GCAGTG 3 cut(s) 216, 300, 515
BtsIMutI CAGTG 4 cut(s) 216, 300, 515, 556
CaiI CAGNNNCTG 2 cut(s) 43, 334
CciI TCATGA 2 cut(s) 48, 64
CfoI GCGC 1 cut(s) 189
Cfr13I GGNCC 1 cut(s) 455
Csp6I GTAC 3 cut(s) 376, 426, 435
CviAII CATG 7 cut(s) 49, 65, 169, 392, 448, 462, 572
CviJI RGCY 7 cut(s) 143, 313, 334, 355, 456, 491, 591
CviKI_1 RGCY 7 cut(s) 143, 313, 334, 355, 456, 491, 591
CviQI GTAC 3 cut(s) 376, 426, 435
DdeI CTNAG 2 cut(s) 356, 587
DpnI GATC 5 cut(s) 42, 47, 84, 167, 232
DpnII GATC 5 cut(s) 40, 45, 82, 165, 230
Eam1104I CTCTTC 1 cut(s) 345
EarI CTCTTC 1 cut(s) 345
Eco57I CTGAAG 1 cut(s) 335
FaeI CATG 7 cut(s) 52, 68, 172, 395, 451, 465, 575
FaqI GGGAC 2 cut(s) 105, 191
FatI CATG 7 cut(s) 48, 64, 168, 391, 447, 461, 571
FauI CCCGC 1 cut(s) 48
FbaI TGATCA 1 cut(s) 45
FblI GTMKAC 1 cut(s) 560
Fnu4HI GCNGC 2 cut(s) 311, 521
Fsp4HI GCNGC 2 cut(s) 311, 521
GlaI GCGC 1 cut(s) 188
GluI GCNGC 2 cut(s) 311, 521
HaeII RGCGCY 1 cut(s) 190
HaeIII GGCC 1 cut(s) 456
HhaI GCGC 1 cut(s) 189
Hin1II CATG 7 cut(s) 52, 68, 172, 395, 451, 465, 575
Hin6I GCGC 1 cut(s) 187
HinP1I GCGC 1 cut(s) 187
HincII GTYRAC 1 cut(s) 561
HindII GTYRAC 1 cut(s) 561
HinfI GANTC 3 cut(s) 10, 149, 211
Hpy166II GTNNAC 1 cut(s) 561
Hpy188I TCNGA 5 cut(s) 45, 82, 154, 277, 588
Hpy188III TCNNGA 4 cut(s) 49, 65, 245, 404
Hpy8I GTNNAC 1 cut(s) 561
Hpy99I CGWCG 1 cut(s) 565
HpyAV CCTTC 3 cut(s) 310, 340, 354
HpyCH4III ACNGT 3 cut(s) 375, 380, 498
HpyCH4IV ACGT 2 cut(s) 94, 265
HpyCH4V TGCA 5 cut(s) 34, 88, 221, 389, 523
HpyF10VI GCNNNNNNNGC 1 cut(s) 517
HpyF3I CTNAG 2 cut(s) 356, 587
HpySE526I ACGT 2 cut(s) 94, 265
Hsp92II CATG 7 cut(s) 52, 68, 172, 395, 451, 465, 575
HspAI GCGC 1 cut(s) 187
KpnI GGTACC 1 cut(s) 429
Ksp22I TGATCA 1 cut(s) 45
Kzo9I GATC 5 cut(s) 40, 45, 82, 165, 230
LguI GCTCTTC 1 cut(s) 345
LmnI GCTCC 1 cut(s) 331
LpnPI CCDG 4 cut(s) 23, 74, 314, 417
Lsp1109I GCAGC 2 cut(s) 322, 507
LweI GCATC 2 cut(s) 42, 230
MaeII ACGT 2 cut(s) 94, 265
MalI GATC 5 cut(s) 42, 47, 84, 167, 232
MboI GATC 5 cut(s) 40, 45, 82, 165, 230
MboII GAAGA 4 cut(s) 175, 207, 334, 362
MflI RGATCY 1 cut(s) 40
MhlI GDGCHC 1 cut(s) 282
MluCI AATT 5 cut(s) 248, 252, 298, 408, 418
MlyI GAGTC 1 cut(s) 4
MnlI CCTC 5 cut(s) 245, 248, 252, 524, 549
MroXI GAANNNNTTC 1 cut(s) 265
MseI TTAA 5 cut(s) 111, 132, 251, 255, 411
MslI CAYNNNNRTG 1 cut(s) 285
MspA1I CMGCKG 1 cut(s) 313
Mva1269I GAATGC 1 cut(s) 343
MwoI GCNNNNNNNGC 1 cut(s) 517
NdeII GATC 5 cut(s) 40, 45, 82, 165, 230
NlaIII CATG 7 cut(s) 52, 68, 172, 395, 451, 465, 575
NlaIV GGNNCC 1 cut(s) 427
NspI RCATGY 2 cut(s) 465, 575
PacI TTAATTAA 1 cut(s) 255
PagI TCATGA 2 cut(s) 48, 64
PciI ACATGT 1 cut(s) 461
PciSI GCTCTTC 1 cut(s) 345
PctI GAATGC 1 cut(s) 343
PdmI GAANNNNTTC 1 cut(s) 265
PfeI GAWTC 2 cut(s) 149, 211
PflFI GACNNNGTC 1 cut(s) 96
PkrI GCNGC 2 cut(s) 312, 522
PleI GAGTC 1 cut(s) 4
PpsI GAGTC 1 cut(s) 4
PscI ACATGT 1 cut(s) 461
PshBI ATTAAT 4 cut(s) 111, 132, 251, 411
Psp1406I AACGTT 1 cut(s) 265
PspN4I GGNNCC 1 cut(s) 427
PspPI GGNCC 1 cut(s) 455
PstI CTGCAG 1 cut(s) 90
PstNI CAGNNNCTG 2 cut(s) 43, 334
PsuI RGATCY 1 cut(s) 40
PsyI GACNNNGTC 1 cut(s) 96
PvuII CAGCTG 1 cut(s) 313
RsaI GTAC 3 cut(s) 377, 427, 436
RsaNI GTAC 3 cut(s) 376, 426, 435
RseI CAYNNNNRTG 1 cut(s) 285
SalI GTCGAC 1 cut(s) 559
SapI GCTCTTC 1 cut(s) 345
SaqAI TTAA 5 cut(s) 111, 132, 251, 255, 411
SatI GCNGC 2 cut(s) 311, 521
Sau3AI GATC 5 cut(s) 40, 45, 82, 165, 230
Sau96I GGNCC 1 cut(s) 455
ScaI AGTACT 1 cut(s) 436
SchI GAGTC 1 cut(s) 4
SduI GDGCHC 1 cut(s) 282
SetI ASST 9 cut(s) 97, 268, 315, 336, 357, 386, 535, 560, 593
SfaNI GCATC 2 cut(s) 42, 230
SfcI CTRYAG 1 cut(s) 86
SmiMI CAYNNNNRTG 1 cut(s) 285
Sse9I AATT 5 cut(s) 248, 252, 298, 408, 418
SsiI CCGC 1 cut(s) 55
SspI AATATT 3 cut(s) 109, 115, 130
TaaI ACNGT 3 cut(s) 375, 380, 498
TaiI ACGT 2 cut(s) 97, 268
TaqI TCGA 3 cut(s) 8, 229, 560
TasI AATT 5 cut(s) 248, 252, 298, 408, 418
TatI WGTACW 2 cut(s) 375, 434
TfiI GAWTC 2 cut(s) 149, 211
Tru1I TTAA 5 cut(s) 111, 132, 251, 255, 411
Tru9I TTAA 5 cut(s) 111, 132, 251, 255, 411
TscAI CASTG 4 cut(s) 223, 300, 522, 556
TseI GCWGC 2 cut(s) 310, 520
TspDTI ATGAA 1 cut(s) 303
TspRI CASTG 4 cut(s) 223, 300, 522, 556
Tth111I GACNNNGTC 1 cut(s) 96
VspI ATTAAT 4 cut(s) 111, 132, 251, 411
XapI RAATTY 1 cut(s) 418
XceI RCATGY 2 cut(s) 465, 575
XmiI GTMKAC 1 cut(s) 560
XmnI GAANNNNTTC 1 cut(s) 265
ZrmI AGTACT 1 cut(s) 436
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.