Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0006418

Physical Location & Seq

Genomic Coordinates Forward (+)

28248324 .. 28249814

Gene Structure 1491 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G286100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGTTTCCTAATTTTTATCATCCTAATGATCAAAGCAAGGATTTGGAATTTCAAATCTCTTCCAATGATCCCCACCAAGAAGATATGATGCAAATAGAAGATCTGGTGCCGGGTCATGAGGTTTTGCCAGAGGAAAGCGATCCATCCCATAATAATAAGAAAATGGGAAAAGGCAAGCAGCAACAGCAACATATGATATTATTTGCTCATCCGGACAATAATGAAGCAAATCCTAGTGATGTAAAGGTTGAAAGGAAGATCGTGCGTAGGGACAACGAACGCCAAAGAAGACAACTTATGGCAGTTCTAAATGCATCTCTTCGATCCCTCCTCCCTCATGAATTCATCAAGGGAAAGCGTTCAATCTCCGAGCACATGAACGAGGCGGTGAATTATATAACTCACATGAAGAGGAAGATCCAAGAATTGAATGCTAAGAAAGAAAAGCTTAGAAGGTTGTATGAATATGATTCTAGTGCACAAGAGTTTGGTCTAGAAAATGAAACTTTGGGTCTTGATTTGGTTAACTCCGTGACCAATATCATGGTTGGGCCAACTTGTTTGGGGGGAGTGGAGGTTGTGATAAGTAGTAGCTGCAGCGAGGATGAAGGGTTGCCTCTTTCAAGAGTGCTGAAATTGTTGCTTGCTGAAGGCCTTTGTGTTGTTGAGTGCGCTTCCACGAGAGTAAACGAAAGGGTCTTTCACACTATTCAGTGTGAGGTCGACGATTTGGAATGTGTACTGGATTTGTCTGAGTTGCAACTGAAACTAAATTTGCAAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

262

Amino Acids

29.83

Weight (kDa)

5.33

Isoelectric Point (pI)

57.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006418)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g28610
malus_domestica	MD00G1002600.v1.1 MD01G1191700.v1.1
prunus_persica	Prupe.2G286100_v2.0.a1
pyrus_communis	pycom01g20290 pycom07g23860
rosa_chinensis	RchiOBHm_Chr1g0368211 RchiOBHm_Chr1g0376061
rosa_laevigata	RLG00000026634 RLG00000027230
rosa_multiflora	Rmu_sc0023565.1_g000001 Rmu_ssc0000116.1_g000021
rosa_roxburghii	Rroxscaffold_4G00282410 Rroxscaffold_4G00288760
rosa_rugosa	Rorug01G0339200 Rorug01G0339300 Rorug01G0393700
rosa_samantha	Rh1AG346900 Rh1AG405100 Rh1BG309700 Rh1BG368700 Rh1CG325100 Rh1CG381600 Rh1DG341500 Rh1DG398600
rosa_wichuraiana	Rw1G030860 Rw1G035950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	106
AccI	GTMKAC	1 cut(s)	723
AccIII	TCCGGA	1 cut(s)	211
AciI	CCGC	1 cut(s)	386
AclWI	GGATC	4 cut(s)	62, 134, 318, 412
AcsI	RAATTY	3 cut(s)	47, 341, 772
AcuI	CTGAAG	1 cut(s)	669
AfaI	GTAC	1 cut(s)	741
AgsI	TTSAA	5 cut(s)	53, 251, 363, 430, 624
AluBI	AGCT	2 cut(s)	448, 594
AluI	AGCT	2 cut(s)	448, 594
Alw21I	GWGCWC	2 cut(s)	375, 481
Alw44I	GTGCAC	1 cut(s)	477
AlwI	GGATC	4 cut(s)	62, 134, 318, 412
Aor13HI	TCCGGA	1 cut(s)	211
AoxI	GGCC	2 cut(s)	551, 652
ApaLI	GTGCAC	1 cut(s)	477
ApeKI	GCWGC	3 cut(s)	178, 594, 597
ApoI	RAATTY	3 cut(s)	47, 341, 772
Asp700I	GAANNNNTTC	1 cut(s)	358
AspLEI	GCGC	1 cut(s)	674
AspS9I	GGNCC	1 cut(s)	551
AsuC2I	CCSGG	1 cut(s)	111
AsuHPI	GGTGA	1 cut(s)	400
BaeGI	GKGCMC	1 cut(s)	481
BanI	GGYRCC	1 cut(s)	106
BauI	CACGAG	1 cut(s)	679
BbsI	GAAGAC	1 cut(s)	295
Bbv12I	GWGCWC	2 cut(s)	375, 481
BbvI	GCAGC	3 cut(s)	190, 581, 609
BccI	CCATC	1 cut(s)	151
BclI	TGATCA	1 cut(s)	28
BcnI	CCSGG	1 cut(s)	111
BfaI	CTAG	3 cut(s)	234, 474, 494
BfmI	CTRYAG	1 cut(s)	595
BglII	AGATCT	1 cut(s)	100
BisI	GCNGC	3 cut(s)	179, 595, 598
BlsI	GCNGC	3 cut(s)	180, 596, 599
Bme1390I	CCNGG	1 cut(s)	111
BmgT120I	GGNCC	1 cut(s)	551
BmiI	GGNNCC	1 cut(s)	108
BmrFI	CCNGG	1 cut(s)	111
BmsI	GCATC	2 cut(s)	78, 323
BpiI	GAAGAC	1 cut(s)	295
BpuMI	CCSGG	1 cut(s)	111
BsaWI	WCCGGW	1 cut(s)	211
BsaXI	ACNNNNNCTCC	2 cut(s)	561, 591
Bse1I	ACTGG	1 cut(s)	747
BseAI	TCCGGA	1 cut(s)	211
BseGI	GGATG	4 cut(s)	19, 143, 208, 610
BseMII	CTCAG	1 cut(s)	744
BseNI	ACTGG	1 cut(s)	747
BseRI	GAGGAG	1 cut(s)	320
BseSI	GKGCMC	1 cut(s)	481
BseXI	GCAGC	3 cut(s)	190, 581, 609
BshFI	GGCC	2 cut(s)	553, 654
BshNI	GGYRCC	1 cut(s)	106
BsiHKAI	GWGCWC	2 cut(s)	375, 481
BsiSI	CCGG	2 cut(s)	110, 212
BslFI	GGGAC	1 cut(s)	284
BsmFI	GGGAC	1 cut(s)	284
BsmI	GAATGC	1 cut(s)	436
BsnI	GGCC	2 cut(s)	553, 654
Bsp1286I	GDGCHC	2 cut(s)	375, 481
Bsp13I	TCCGGA	1 cut(s)	211
Bsp143I	GATC	7 cut(s)	28, 67, 100, 139, 258, 323, 417
BspACI	CCGC	1 cut(s)	386
BspANI	GGCC	2 cut(s)	553, 654
BspCNI	CTCAG	1 cut(s)	745
BspEI	TCCGGA	1 cut(s)	211
BspHI	TCATGA	2 cut(s)	115, 337
BspLI	GGNNCC	1 cut(s)	108
BspMAI	CTGCAG	1 cut(s)	599
BspPI	GGATC	4 cut(s)	62, 134, 318, 412
BspT107I	GGYRCC	1 cut(s)	106
BsrI	ACTGG	1 cut(s)	747
BssMI	GATC	7 cut(s)	28, 67, 100, 139, 258, 323, 417
BssSI	CACGAG	1 cut(s)	679
Bst2BI	CACGAG	1 cut(s)	679
Bst6I	CTCTTC	3 cut(s)	64, 324, 404
BstC8I	GCNNGC	2 cut(s)	176, 645
BstDEI	CTNAG	3 cut(s)	435, 449, 753
BstF5I	GGATG	4 cut(s)	19, 143, 208, 610
BstHHI	GCGC	1 cut(s)	674
BstKTI	GATC	7 cut(s)	31, 70, 103, 142, 261, 326, 420
BstMBI	GATC	7 cut(s)	28, 67, 100, 139, 258, 323, 417
BstMWI	GCNNNNNNNGC	1 cut(s)	184
BstSCI	CCNGG	1 cut(s)	109
BstSFI	CTRYAG	1 cut(s)	595
BstSLI	GKGCMC	1 cut(s)	481
BstV1I	GCAGC	3 cut(s)	190, 581, 609
BstV2I	GAAGAC	1 cut(s)	295
BstX2I	RGATCY	2 cut(s)	100, 417
BstXI	CCANNNNNNTGG	1 cut(s)	544
BstYI	RGATCY	2 cut(s)	100, 417
BsuRI	GGCC	2 cut(s)	553, 654
BtsCI	GGATG	4 cut(s)	19, 143, 208, 610
BtsIMutI	CAGTG	1 cut(s)	719
Cac8I	GCNNGC	2 cut(s)	176, 645
CciI	TCATGA	2 cut(s)	115, 337
CfoI	GCGC	1 cut(s)	674
Cfr13I	GGNCC	1 cut(s)	551
Csp6I	GTAC	1 cut(s)	740
CviAII	CATG	5 cut(s)	116, 338, 376, 406, 544
CviJI	RGCY	4 cut(s)	448, 553, 594, 654
CviKI_1	RGCY	4 cut(s)	448, 553, 594, 654
CviQI	GTAC	1 cut(s)	740
DdeI	CTNAG	3 cut(s)	435, 449, 753
DpnI	GATC	7 cut(s)	30, 69, 102, 141, 260, 325, 419
DpnII	GATC	7 cut(s)	28, 67, 100, 139, 258, 323, 417
Eam1104I	CTCTTC	3 cut(s)	64, 324, 404
EarI	CTCTTC	3 cut(s)	64, 324, 404
Eco147I	AGGCCT	1 cut(s)	654
Eco57I	CTGAAG	1 cut(s)	669
EcoRI	GAATTC	1 cut(s)	341
EcoT22I	ATGCAT	1 cut(s)	316
FaeI	CATG	5 cut(s)	119, 341, 379, 409, 547
FalI	AAGNNNNNCTT	2 cut(s)	432, 464
FaqI	GGGAC	1 cut(s)	284
FatI	CATG	5 cut(s)	115, 337, 375, 405, 543
FauNDI	CATATG	1 cut(s)	192
FbaI	TGATCA	1 cut(s)	28
FblI	GTMKAC	1 cut(s)	723
Fnu4HI	GCNGC	3 cut(s)	179, 595, 598
FokI	GGATG	4 cut(s)	6, 130, 195, 617
Fsp4HI	GCNGC	3 cut(s)	179, 595, 598
FspBI	CTAG	3 cut(s)	234, 474, 494
GlaI	GCGC	1 cut(s)	673
GluI	GCNGC	3 cut(s)	179, 595, 598
HaeIII	GGCC	2 cut(s)	553, 654
HapII	CCGG	2 cut(s)	110, 212
HhaI	GCGC	1 cut(s)	674
Hin1II	CATG	5 cut(s)	119, 341, 379, 409, 547
Hin6I	GCGC	1 cut(s)	672
HinP1I	GCGC	1 cut(s)	672
HincII	GTYRAC	2 cut(s)	526, 724
HindII	GTYRAC	2 cut(s)	526, 724
HindIII	AAGCTT	1 cut(s)	446
HinfI	GANTC	1 cut(s)	470
HpaI	GTTAAC	1 cut(s)	526
HpaII	CCGG	2 cut(s)	110, 212
HphI	GGTGA	1 cut(s)	400
Hpy166II	GTNNAC	5 cut(s)	479, 526, 688, 724, 740
Hpy188I	TCNGA	3 cut(s)	370, 754, 785
Hpy188III	TCNNGA	6 cut(s)	116, 212, 338, 494, 515, 624
Hpy8I	GTNNAC	5 cut(s)	479, 526, 688, 724, 740
Hpy99I	CGWCG	1 cut(s)	728
HpyAV	CCTTC	3 cut(s)	447, 602, 644
HpyCH4V	TGCA	6 cut(s)	91, 314, 479, 597, 760, 778
HpyF10VI	GCNNNNNNNGC	1 cut(s)	184
HpyF3I	CTNAG	3 cut(s)	435, 449, 753
Hsp92II	CATG	5 cut(s)	119, 341, 379, 409, 547
HspAI	GCGC	1 cut(s)	672
Kpn2I	TCCGGA	1 cut(s)	211
Ksp22I	TGATCA	1 cut(s)	28
KspAI	GTTAAC	1 cut(s)	526
Kzo9I	GATC	7 cut(s)	28, 67, 100, 139, 258, 323, 417
LpnPI	CCDG	5 cut(s)	89, 123, 141, 225, 728
Lsp1109I	GCAGC	3 cut(s)	190, 581, 609
LweI	GCATC	2 cut(s)	78, 323
MaeI	CTAG	3 cut(s)	234, 474, 494
MaeIII	GTNAC	1 cut(s)	532
MalI	GATC	7 cut(s)	30, 69, 102, 141, 260, 325, 419
MboI	GATC	7 cut(s)	28, 67, 100, 139, 258, 323, 417
MboII	GAAGA	8 cut(s)	51, 92, 110, 268, 300, 311, 421, 427
MflI	RGATCY	2 cut(s)	100, 417
MhlI	GDGCHC	2 cut(s)	375, 481
MluCI	AATT	7 cut(s)	10, 47, 341, 391, 425, 635, 772
Mph1103I	ATGCAT	1 cut(s)	316
MroI	TCCGGA	1 cut(s)	211
MroXI	GAANNNNTTC	1 cut(s)	358
MseI	TTAA	1 cut(s)	525
MslI	CAYNNNNRTG	1 cut(s)	24
MspI	CCGG	2 cut(s)	110, 212
MspR9I	CCNGG	1 cut(s)	111
Mva1269I	GAATGC	1 cut(s)	436
MwoI	GCNNNNNNNGC	1 cut(s)	184
NciI	CCSGG	1 cut(s)	111
NdeI	CATATG	1 cut(s)	192
NdeII	GATC	7 cut(s)	28, 67, 100, 139, 258, 323, 417
NlaIII	CATG	5 cut(s)	119, 341, 379, 409, 547
NlaIV	GGNNCC	1 cut(s)	108
NmuCI	GTSAC	1 cut(s)	532
NsiI	ATGCAT	1 cut(s)	316
PagI	TCATGA	2 cut(s)	115, 337
PceI	AGGCCT	1 cut(s)	654
PctI	GAATGC	1 cut(s)	436
PdmI	GAANNNNTTC	1 cut(s)	358
PfeI	GAWTC	1 cut(s)	470
PkrI	GCNGC	3 cut(s)	180, 596, 599
PspN4I	GGNNCC	1 cut(s)	108
PspPI	GGNCC	1 cut(s)	551
PstI	CTGCAG	1 cut(s)	599
PsuI	RGATCY	2 cut(s)	100, 417
RsaI	GTAC	1 cut(s)	741
RsaNI	GTAC	1 cut(s)	740
RseI	CAYNNNNRTG	1 cut(s)	24
SalI	GTCGAC	1 cut(s)	722
SaqAI	TTAA	1 cut(s)	525
SatI	GCNGC	3 cut(s)	179, 595, 598
Sau3AI	GATC	7 cut(s)	28, 67, 100, 139, 258, 323, 417
Sau96I	GGNCC	1 cut(s)	551
ScrFI	CCNGG	1 cut(s)	111
SduI	GDGCHC	2 cut(s)	375, 481
SetI	ASST	7 cut(s)	123, 249, 450, 458, 579, 596, 723
SfaNI	GCATC	2 cut(s)	78, 323
SfcI	CTRYAG	1 cut(s)	595
SmiMI	CAYNNNNRTG	1 cut(s)	24
Sse9I	AATT	7 cut(s)	10, 47, 341, 391, 425, 635, 772
SseBI	AGGCCT	1 cut(s)	654
SsiI	CCGC	1 cut(s)	386
SspMI	CTAG	3 cut(s)	234, 474, 494
StuI	AGGCCT	1 cut(s)	654
StyD4I	CCNGG	1 cut(s)	109
TaqI	TCGA	2 cut(s)	322, 723
TasI	AATT	7 cut(s)	10, 47, 341, 391, 425, 635, 772
TatI	WGTACW	1 cut(s)	739
TfiI	GAWTC	1 cut(s)	470
Tru1I	TTAA	1 cut(s)	525
Tru9I	TTAA	1 cut(s)	525
TscAI	CASTG	1 cut(s)	719
TseFI	GTSAC	1 cut(s)	532
TseI	GCWGC	3 cut(s)	178, 594, 597
Tsp45I	GTSAC	1 cut(s)	532
TspDTI	ATGAA	8 cut(s)	237, 334, 354, 392, 422, 477, 516, 621
TspGWI	ACGGA	1 cut(s)	520
TspRI	CASTG	1 cut(s)	719
VneI	GTGCAC	1 cut(s)	477
XapI	RAATTY	3 cut(s)	47, 341, 772
XbaI	TCTAGA	1 cut(s)	493
XmiI	GTMKAC	1 cut(s)	723
XmnI	GAANNNNTTC	1 cut(s)	358
XspI	CTAG	3 cut(s)	234, 474, 494
Zsp2I	ATGCAT	1 cut(s)	316

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.