Rh1BG368700

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0006418
Physical Location & Seq
Forward (+)
49908297 .. 49909275
979 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG368700.1

Sequence Viewer

Length: 648 bp
ATGTTTCCTTTCCCTCATGATCATCAAAGCAAATATATGGAATTACAAATATCTTCGACTCCCCACCAAGAAGATTTTATGCAACAGGATCTGATCATGATGCGGGGTAGTCATGAGGTTTTGCCATCTGATCTGCAGGGACGTAGTCTATCCAATATTAATATTAGTGAAGCAAATATTAACAATATGGCTACTGATTCTGACGAAAGGAAGATCATGCGTAGGGACAACGAGCGCCAAAGAAGACAAGTTATGGCGATTCGCACTGCATCACTTCGATCCCTCCTCCCTCTAGAATTAATCAAGGGAAAACGTTCAATCTCCGAGCACATAAATGAAGCAGTGAATTATATAAAGCAGCTGAAGGAAAAGATACAGGAGCTGAATGCCAAGAGGGAAGAGCTTAGAAGGGTGTATAAACATTACAGTAGTTCTGCACATGATTTCAGTCCTGAAATTAATGAAAATTTGGGTACTAAGAGTACTTCCAATATCATGGTTGGCCCAACATGTTGGGGTGGAGTGGAGATTGTGAGGGCCTTACCGTTGTGGAGTGTGCTTCCACCACAGCAAATCAGAGGTTGTTTCACTCTATTCAGTGTGAGGTCGACGATTTGGCATGTCTGGATTTGTCTGAGCTACAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

215

Amino Acids

24.98

Weight (kDa)

8.79

Isoelectric Point (pI)

76.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 70 - 122 2.7e-07 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 608
AciI CCGC 1 cut(s) 103
AclI AACGTT 1 cut(s) 313
AclWI GGATC 2 cut(s) 96, 273
AcsI RAATTY 1 cut(s) 466
AcuI CTGAAG 1 cut(s) 383
AfaI GTAC 2 cut(s) 475, 484
AflIII ACRYGT 1 cut(s) 509
AgsI TTSAA 1 cut(s) 318
AluBI AGCT 4 cut(s) 361, 382, 403, 639
AluI AGCT 4 cut(s) 361, 382, 403, 639
Alw21I GWGCWC 1 cut(s) 330
AlwI GGATC 2 cut(s) 96, 273
AlwNI CAGNNNCTG 2 cut(s) 91, 382
AoxI GGCC 2 cut(s) 502, 537
ApeKI GCWGC 1 cut(s) 358
ApoI RAATTY 1 cut(s) 466
AseI ATTAAT 3 cut(s) 159, 299, 459
Asp700I GAANNNNTTC 1 cut(s) 313
AspLEI GCGC 1 cut(s) 237
AspS9I GGNCC 2 cut(s) 503, 537
BbsI GAAGAC 1 cut(s) 250
Bbv12I GWGCWC 1 cut(s) 330
BbvI GCAGC 1 cut(s) 370
BccI CCATC 1 cut(s) 133
BclI TGATCA 2 cut(s) 19, 93
BfaI CTAG 1 cut(s) 293
BfmI CTRYAG 1 cut(s) 134
BfoI RGCGCY 1 cut(s) 238
BisI GCNGC 1 cut(s) 359
BlsI GCNGC 1 cut(s) 360
BmcAI AGTACT 1 cut(s) 484
BmgT120I GGNCC 2 cut(s) 503, 537
BmsI GCATC 2 cut(s) 90, 278
BpiI GAAGAC 1 cut(s) 250
BseMII CTCAG 1 cut(s) 626
BseRI GAGGAG 1 cut(s) 275
BseXI GCAGC 1 cut(s) 370
BsgI GTGCAG 1 cut(s) 420
BshFI GGCC 2 cut(s) 504, 539
BsiHKAI GWGCWC 1 cut(s) 330
BslFI GGGAC 2 cut(s) 153, 239
BsmFI GGGAC 2 cut(s) 153, 239
BsmI GAATGC 1 cut(s) 391
BsnI GGCC 2 cut(s) 504, 539
Bsp1286I GDGCHC 1 cut(s) 330
Bsp143I GATC 6 cut(s) 19, 88, 93, 130, 213, 278
BspACI CCGC 1 cut(s) 103
BspANI GGCC 2 cut(s) 504, 539
BspCNI CTCAG 1 cut(s) 627
BspHI TCATGA 3 cut(s) 16, 96, 112
BspMAI CTGCAG 1 cut(s) 138
BspPI GGATC 2 cut(s) 96, 273
BspQI GCTCTTC 1 cut(s) 393
BssMI GATC 6 cut(s) 19, 88, 93, 130, 213, 278
Bst4CI ACNGT 2 cut(s) 428, 546
Bst6I CTCTTC 1 cut(s) 393
BstDEI CTNAG 3 cut(s) 404, 477, 635
BstH2I RGCGCY 1 cut(s) 238
BstHHI GCGC 1 cut(s) 237
BstKTI GATC 6 cut(s) 22, 91, 96, 133, 216, 281
BstMBI GATC 6 cut(s) 19, 88, 93, 130, 213, 278
BstNSI RCATGY 2 cut(s) 513, 623
BstSFI CTRYAG 1 cut(s) 134
BstV1I GCAGC 1 cut(s) 370
BstV2I GAAGAC 1 cut(s) 250
BstX2I RGATCY 1 cut(s) 88
BstXI CCANNNNNNTGG 2 cut(s) 496, 513
BstYI RGATCY 1 cut(s) 88
BsuRI GGCC 2 cut(s) 504, 539
BtsI GCAGTG 2 cut(s) 264, 348
BtsIMutI CAGTG 3 cut(s) 264, 348, 604
CaiI CAGNNNCTG 2 cut(s) 91, 382
CciI TCATGA 3 cut(s) 16, 96, 112
CfoI GCGC 1 cut(s) 237
Cfr13I GGNCC 2 cut(s) 503, 537
Csp6I GTAC 2 cut(s) 474, 483
CviAII CATG 8 cut(s) 17, 97, 113, 217, 440, 496, 510, 620
CviJI RGCY 7 cut(s) 191, 361, 382, 403, 504, 539, 639
CviKI_1 RGCY 7 cut(s) 191, 361, 382, 403, 504, 539, 639
CviQI GTAC 2 cut(s) 474, 483
DdeI CTNAG 3 cut(s) 404, 477, 635
DpnI GATC 6 cut(s) 21, 90, 95, 132, 215, 280
DpnII GATC 6 cut(s) 19, 88, 93, 130, 213, 278
Eam1104I CTCTTC 1 cut(s) 393
EarI CTCTTC 1 cut(s) 393
Eco57I CTGAAG 1 cut(s) 383
EcoO109I RGGNCCY 1 cut(s) 537
FaeI CATG 8 cut(s) 20, 100, 116, 220, 443, 499, 513, 623
FaqI GGGAC 2 cut(s) 153, 239
FatI CATG 8 cut(s) 16, 96, 112, 216, 439, 495, 509, 619
FauI CCCGC 1 cut(s) 96
FbaI TGATCA 2 cut(s) 19, 93
FblI GTMKAC 1 cut(s) 608
Fnu4HI GCNGC 1 cut(s) 359
Fsp4HI GCNGC 1 cut(s) 359
FspBI CTAG 1 cut(s) 293
GlaI GCGC 1 cut(s) 236
GluI GCNGC 1 cut(s) 359
HaeII RGCGCY 1 cut(s) 238
HaeIII GGCC 2 cut(s) 504, 539
HhaI GCGC 1 cut(s) 237
Hin1II CATG 8 cut(s) 20, 100, 116, 220, 443, 499, 513, 623
Hin6I GCGC 1 cut(s) 235
HinP1I GCGC 1 cut(s) 235
HincII GTYRAC 1 cut(s) 609
HindII GTYRAC 1 cut(s) 609
HinfI GANTC 3 cut(s) 58, 197, 259
Hpy166II GTNNAC 1 cut(s) 609
Hpy188I TCNGA 6 cut(s) 93, 130, 202, 325, 578, 636
Hpy188III TCNNGA 6 cut(s) 17, 97, 113, 293, 452, 625
Hpy8I GTNNAC 1 cut(s) 609
Hpy99I CGWCG 1 cut(s) 613
HpyAV CCTTC 2 cut(s) 358, 402
HpyCH4III ACNGT 2 cut(s) 428, 546
HpyCH4IV ACGT 2 cut(s) 142, 313
HpyCH4V TGCA 4 cut(s) 82, 136, 269, 437
HpyF3I CTNAG 3 cut(s) 404, 477, 635
HpySE526I ACGT 2 cut(s) 142, 313
Hsp92II CATG 8 cut(s) 20, 100, 116, 220, 443, 499, 513, 623
HspAI GCGC 1 cut(s) 235
Ksp22I TGATCA 2 cut(s) 19, 93
Kzo9I GATC 6 cut(s) 19, 88, 93, 130, 213, 278
LguI GCTCTTC 1 cut(s) 393
LmnI GCTCC 1 cut(s) 379
LpnPI CCDG 5 cut(s) 71, 122, 362, 465, 610
Lsp1109I GCAGC 1 cut(s) 370
LweI GCATC 2 cut(s) 90, 278
MaeI CTAG 1 cut(s) 293
MaeII ACGT 2 cut(s) 142, 313
MalI GATC 6 cut(s) 21, 90, 95, 132, 215, 280
MboI GATC 6 cut(s) 19, 88, 93, 130, 213, 278
MboII GAAGA 5 cut(s) 45, 83, 223, 255, 410
MflI RGATCY 1 cut(s) 88
MhlI GDGCHC 1 cut(s) 330
MluCI AATT 5 cut(s) 41, 296, 346, 456, 466
MlyI GAGTC 1 cut(s) 52
MnlI CCTC 9 cut(s) 24, 109, 293, 296, 300, 387, 528, 572, 597
MroXI GAANNNNTTC 1 cut(s) 313
MseI TTAA 4 cut(s) 159, 180, 299, 459
MslI CAYNNNNRTG 1 cut(s) 333
MspA1I CMGCKG 1 cut(s) 361
Mva1269I GAATGC 1 cut(s) 391
NdeII GATC 6 cut(s) 19, 88, 93, 130, 213, 278
NlaIII CATG 8 cut(s) 20, 100, 116, 220, 443, 499, 513, 623
NspI RCATGY 2 cut(s) 513, 623
PagI TCATGA 3 cut(s) 16, 96, 112
PciI ACATGT 1 cut(s) 509
PciSI GCTCTTC 1 cut(s) 393
PctI GAATGC 1 cut(s) 391
PdmI GAANNNNTTC 1 cut(s) 313
PfeI GAWTC 2 cut(s) 197, 259
PflFI GACNNNGTC 1 cut(s) 144
PkrI GCNGC 1 cut(s) 360
PleI GAGTC 1 cut(s) 52
PpsI GAGTC 1 cut(s) 52
PscI ACATGT 1 cut(s) 509
PshBI ATTAAT 3 cut(s) 159, 299, 459
Psp1406I AACGTT 1 cut(s) 313
PspPI GGNCC 2 cut(s) 503, 537
PstI CTGCAG 1 cut(s) 138
PstNI CAGNNNCTG 2 cut(s) 91, 382
PsuI RGATCY 1 cut(s) 88
PsyI GACNNNGTC 1 cut(s) 144
PvuII CAGCTG 1 cut(s) 361
RsaI GTAC 2 cut(s) 475, 484
RsaNI GTAC 2 cut(s) 474, 483
RseI CAYNNNNRTG 1 cut(s) 333
SalI GTCGAC 1 cut(s) 607
SapI GCTCTTC 1 cut(s) 393
SaqAI TTAA 4 cut(s) 159, 180, 299, 459
SatI GCNGC 1 cut(s) 359
Sau3AI GATC 6 cut(s) 19, 88, 93, 130, 213, 278
Sau96I GGNCC 2 cut(s) 503, 537
ScaI AGTACT 1 cut(s) 484
SchI GAGTC 1 cut(s) 52
SduI GDGCHC 1 cut(s) 330
SetI ASST 9 cut(s) 120, 145, 316, 363, 384, 405, 583, 608, 641
SfaNI GCATC 2 cut(s) 90, 278
SfcI CTRYAG 1 cut(s) 134
SmiMI CAYNNNNRTG 1 cut(s) 333
Sse9I AATT 5 cut(s) 41, 296, 346, 456, 466
SsiI CCGC 1 cut(s) 103
SspI AATATT 3 cut(s) 157, 163, 178
SspMI CTAG 1 cut(s) 293
TaaI ACNGT 2 cut(s) 428, 546
TaiI ACGT 2 cut(s) 145, 316
TaqI TCGA 3 cut(s) 56, 277, 608
TasI AATT 5 cut(s) 41, 296, 346, 456, 466
TatI WGTACW 1 cut(s) 482
TfiI GAWTC 2 cut(s) 197, 259
Tru1I TTAA 4 cut(s) 159, 180, 299, 459
Tru9I TTAA 4 cut(s) 159, 180, 299, 459
TscAI CASTG 3 cut(s) 271, 348, 604
TseI GCWGC 1 cut(s) 358
TspDTI ATGAA 2 cut(s) 351, 477
TspRI CASTG 3 cut(s) 271, 348, 604
Tth111I GACNNNGTC 1 cut(s) 144
VspI ATTAAT 3 cut(s) 159, 299, 459
XapI RAATTY 1 cut(s) 466
XbaI TCTAGA 1 cut(s) 292
XceI RCATGY 2 cut(s) 513, 623
XmiI GTMKAC 1 cut(s) 608
XmnI GAANNNNTTC 1 cut(s) 313
XspI CTAG 1 cut(s) 293
ZrmI AGTACT 1 cut(s) 484
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.