Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0006649

Physical Location & Seq

Genomic Coordinates Forward (+)

28245264 .. 28246669

Gene Structure 1406 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G286000.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGATGTCGGCATGTTCAATAACATTAATACCGGAGGCCAGCAGAGAAAATCATCATTAGCATTGACTTTAGACAGTGCAGAAAATCAAGACAAGTCTAATGATGATGGAAAAAAGAAGATGATGCACAGAGAAATTGAAAAGAAGCGAAGGCAAGAAATGGCCGCCCTTTATGCATCACTTAGATCCGTACTCCCTCTCGAATATATCAAGGGAAAGCGTTCGTTGGCGGAACATATGAACGAAGCTGTGAATTATATCAAACACCTACAAACGAGGATCAAAGTACTTGGCCGCCGAAGAGATGAGCTAAAGATCGGGACGTCTTCGTTGCCCAGTTTGAGTGCTAGCTCATCAACTTCTTCAACAAGTCCTCGAGTTGCAGTGCACCCTTGCTTTGGTGGCGTTGAGATTGTGATAAGTAGGGGTGGCTCTGTGGAGCAAGGTTTGGTCCTATCAAGATTGCTAAAAATACTGCTTGGACAAGGGCTTACTGTAATCAGCTGTGCTACCACCCAAGTTAACGGAAGGCTTGTCTACACCATCCAATCTGAGGTTAGCGATCCGGCGTGGGGAGACTTTTCTGGATTGCAGCAGATTCTGACTGAATCATTGACTAGATTTTCTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044798 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0090575 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

211

Amino Acids

23.08

Weight (kDa)

9.66

Isoelectric Point (pI)

58.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006649)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25400 AT4G25400 AT4G25410 AT5G51780 AT5G51780 AT5G51790 AT5G51790 AT5G51790 AT5G51790
fragaria_vesca	FvH4_7g28600 FvH4_7g28600 FvH4_7g28600
malus_domestica	MD01G1191600.v1.1
prunus_persica	Prupe.2G286000_v2.0.a1 Prupe.2G286000_v2.0.a1
pyrus_communis	pycom01g20280 pycom07g23850
rosa_chinensis	RchiOBHm_Chr1g0376011
rosa_laevigata	RLG00000026635
rosa_multiflora	Rmu_ssc0000116.1_g000014
rosa_roxburghii	Rroxscaffold_4G00282420
rosa_rugosa	Rorug01G0393700
rosa_samantha	Rh1BG368500 Rh1CG381400 Rh1DG398400
rosa_wichuraiana	Rw1G035920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	326
AccI	GTMKAC	1 cut(s)	537
AciI	CCGC	3 cut(s)	165, 230, 295
AclWI	GGATC	3 cut(s)	180, 287, 557
AcoI	YGGCCR	2 cut(s)	162, 292
AcyI	GRCGYC	1 cut(s)	323
AfaI	GTAC	2 cut(s)	192, 288
AfiI	CCNNNNNNNGG	3 cut(s)	398, 553, 572
AgsI	TTSAA	3 cut(s)	19, 140, 366
AluBI	AGCT	4 cut(s)	248, 310, 351, 504
AluI	AGCT	4 cut(s)	248, 310, 351, 504
Alw21I	GWGCWC	1 cut(s)	390
Alw26I	GTCTC	1 cut(s)	570
Alw44I	GTGCAC	1 cut(s)	386
AlwI	GGATC	3 cut(s)	180, 287, 557
AlwNI	CAGNNNCTG	1 cut(s)	601
Ama87I	CYCGRG	1 cut(s)	375
AoxI	GGCC	3 cut(s)	37, 162, 292
ApaLI	GTGCAC	1 cut(s)	386
ApeKI	GCWGC	1 cut(s)	592
AseI	ATTAAT	1 cut(s)	27
Asp700I	GAANNNNTTC	1 cut(s)	220
AspS9I	GGNCC	1 cut(s)	451
AsuNHI	GCTAGC	1 cut(s)	347
AvaI	CYCGRG	1 cut(s)	375
AvaII	GGWCC	1 cut(s)	451
BaeGI	GKGCMC	1 cut(s)	390
BbsI	GAAGAC	1 cut(s)	318
Bbv12I	GWGCWC	1 cut(s)	390
BbvI	GCAGC	1 cut(s)	604
BccI	CCATC	2 cut(s)	101, 551
BcoDI	GTCTC	1 cut(s)	570
BfaI	CTAG	2 cut(s)	348, 618
BisI	GCNGC	3 cut(s)	165, 295, 593
BlsI	GCNGC	3 cut(s)	166, 296, 594
BmcAI	AGTACT	1 cut(s)	288
Bme18I	GGWCC	1 cut(s)	451
BmeT110I	CYCGRG	1 cut(s)	375
BmgT120I	GGNCC	1 cut(s)	451
BmrI	ACTGGG	1 cut(s)	330
BmsI	GCATC	2 cut(s)	114, 185
BmtI	GCTAGC	1 cut(s)	351
BmuI	ACTGGG	1 cut(s)	330
BpiI	GAAGAC	1 cut(s)	318
BsaHI	GRCGYC	1 cut(s)	323
BsaWI	WCCGGW	1 cut(s)	32
Bsc4I	CCNNNNNNNGG	3 cut(s)	398, 553, 572
Bse1I	ACTGG	1 cut(s)	336
BseGI	GGATG	2 cut(s)	10, 543
BseLI	CCNNNNNNNGG	3 cut(s)	398, 553, 572
BseMII	CTCAG	1 cut(s)	543
BseNI	ACTGG	1 cut(s)	336
BseSI	GKGCMC	1 cut(s)	390
BseXI	GCAGC	1 cut(s)	604
BsgI	GTGCAG	1 cut(s)	99
BshFI	GGCC	3 cut(s)	39, 164, 294
BsiHKAI	GWGCWC	1 cut(s)	390
BsiHKCI	CYCGRG	1 cut(s)	375
BsiSI	CCGG	2 cut(s)	33, 566
BslFI	GGGAC	1 cut(s)	334
BslI	CCNNNNNNNGG	3 cut(s)	398, 553, 572
BsmAI	GTCTC	1 cut(s)	570
BsmFI	GGGAC	1 cut(s)	334
BsnI	GGCC	3 cut(s)	39, 164, 294
BsoBI	CYCGRG	1 cut(s)	375
Bsp1286I	GDGCHC	1 cut(s)	390
Bsp143I	GATC	4 cut(s)	185, 279, 315, 562
BspACI	CCGC	3 cut(s)	165, 230, 295
BspANI	GGCC	3 cut(s)	39, 164, 294
BspCNI	CTCAG	1 cut(s)	544
BspOI	GCTAGC	1 cut(s)	351
BspPI	GGATC	3 cut(s)	180, 287, 557
BsrI	ACTGG	1 cut(s)	336
BssMI	GATC	4 cut(s)	185, 279, 315, 562
BssNI	GRCGYC	1 cut(s)	323
Bst4CI	ACNGT	2 cut(s)	77, 496
Bst6I	CTCTTC	1 cut(s)	295
BstACI	GRCGYC	1 cut(s)	323
BstC8I	GCNNGC	2 cut(s)	41, 349
BstDEI	CTNAG	2 cut(s)	182, 552
BstF5I	GGATG	2 cut(s)	10, 543
BstKTI	GATC	4 cut(s)	188, 282, 318, 565
BstMAI	GTCTC	1 cut(s)	570
BstMBI	GATC	4 cut(s)	185, 279, 315, 562
BstMWI	GCNNNNNNNGC	2 cut(s)	173, 402
BstNSI	RCATGY	1 cut(s)	16
BstSLI	GKGCMC	1 cut(s)	390
BstV1I	GCAGC	1 cut(s)	604
BstV2I	GAAGAC	1 cut(s)	318
BstX2I	RGATCY	1 cut(s)	185
BstYI	RGATCY	1 cut(s)	185
BsuRI	GGCC	3 cut(s)	39, 164, 294
BtsCI	GGATG	2 cut(s)	10, 543
BtsI	GCAGTG	1 cut(s)	390
BtsIMutI	CAGTG	2 cut(s)	82, 390
Cac8I	GCNNGC	2 cut(s)	41, 349
CaiI	CAGNNNCTG	1 cut(s)	601
Cfr13I	GGNCC	1 cut(s)	451
Csp6I	GTAC	2 cut(s)	191, 287
CviAII	CATG	1 cut(s)	13
CviQI	GTAC	2 cut(s)	191, 287
DdeI	CTNAG	2 cut(s)	182, 552
DpnI	GATC	4 cut(s)	187, 281, 317, 564
DpnII	GATC	4 cut(s)	185, 279, 315, 562
EaeI	YGGCCR	2 cut(s)	162, 292
Eam1104I	CTCTTC	1 cut(s)	295
EarI	CTCTTC	1 cut(s)	295
EciI	GGCGGA	1 cut(s)	245
Eco47I	GGWCC	1 cut(s)	451
Eco88I	CYCGRG	1 cut(s)	375
EcoT22I	ATGCAT	1 cut(s)	178
FaeI	CATG	1 cut(s)	16
FaiI	YATR	6 cut(s)	14, 174, 207, 237, 239, 258
FaqI	GGGAC	1 cut(s)	334
FatI	CATG	1 cut(s)	12
FauNDI	CATATG	1 cut(s)	237
FblI	GTMKAC	1 cut(s)	537
Fnu4HI	GCNGC	3 cut(s)	165, 295, 593
FokI	GGATG	2 cut(s)	17, 530
Fsp4HI	GCNGC	3 cut(s)	165, 295, 593
FspBI	CTAG	2 cut(s)	348, 618
GluI	GCNGC	3 cut(s)	165, 295, 593
HaeIII	GGCC	3 cut(s)	39, 164, 294
HapII	CCGG	2 cut(s)	33, 566
Hin1I	GRCGYC	1 cut(s)	323
Hin1II	CATG	1 cut(s)	16
HincII	GTYRAC	1 cut(s)	523
HindII	GTYRAC	1 cut(s)	523
HinfI	GANTC	2 cut(s)	598, 608
HpaI	GTTAAC	1 cut(s)	523
HpaII	CCGG	2 cut(s)	33, 566
Hpy166II	GTNNAC	3 cut(s)	388, 523, 538
Hpy188I	TCNGA	2 cut(s)	553, 603
Hpy188III	TCNNGA	5 cut(s)	89, 200, 319, 459, 585
Hpy8I	GTNNAC	3 cut(s)	388, 523, 538
HpyAV	CCTTC	2 cut(s)	144, 522
HpyCH4III	ACNGT	2 cut(s)	77, 496
HpyCH4IV	ACGT	1 cut(s)	323
HpyCH4V	TGCA	6 cut(s)	80, 127, 176, 383, 388, 592
HpyF10VI	GCNNNNNNNGC	2 cut(s)	173, 402
HpyF3I	CTNAG	2 cut(s)	182, 552
HpySE526I	ACGT	1 cut(s)	323
Hsp92I	GRCGYC	1 cut(s)	323
Hsp92II	CATG	1 cut(s)	16
KspAI	GTTAAC	1 cut(s)	523
Kzo9I	GATC	4 cut(s)	185, 279, 315, 562
LmnI	GCTCC	1 cut(s)	439
LpnPI	CCDG	5 cut(s)	46, 53, 349, 570, 579
Lsp1109I	GCAGC	1 cut(s)	604
LweI	GCATC	2 cut(s)	114, 185
MaeI	CTAG	2 cut(s)	348, 618
MaeII	ACGT	1 cut(s)	323
MalI	GATC	4 cut(s)	187, 281, 317, 564
MboI	GATC	4 cut(s)	185, 279, 315, 562
MboII	GAAGA	4 cut(s)	130, 312, 318, 354
MflI	RGATCY	1 cut(s)	185
MhlI	GDGCHC	1 cut(s)	390
MluCI	AATT	3 cut(s)	135, 253, 628
MnlI	CCTC	5 cut(s)	29, 207, 270, 384, 547
Mph1103I	ATGCAT	1 cut(s)	178
MroXI	GAANNNNTTC	1 cut(s)	220
MseI	TTAA	3 cut(s)	27, 522, 631
MspA1I	CMGCKG	1 cut(s)	504
MspI	CCGG	2 cut(s)	33, 566
MwoI	GCNNNNNNNGC	2 cut(s)	173, 402
NdeI	CATATG	1 cut(s)	237
NdeII	GATC	4 cut(s)	185, 279, 315, 562
NheI	GCTAGC	1 cut(s)	347
NlaIII	CATG	1 cut(s)	16
NsiI	ATGCAT	1 cut(s)	178
NspI	RCATGY	1 cut(s)	16
PaeR7I	CTCGAG	1 cut(s)	375
PdmI	GAANNNNTTC	1 cut(s)	220
PfeI	GAWTC	2 cut(s)	598, 608
PkrI	GCNGC	3 cut(s)	166, 296, 594
PshBI	ATTAAT	1 cut(s)	27
PspPI	GGNCC	1 cut(s)	451
PspXI	VCTCGAGB	1 cut(s)	375
PstNI	CAGNNNCTG	1 cut(s)	601
PsuI	RGATCY	1 cut(s)	185
PvuII	CAGCTG	1 cut(s)	504
RsaI	GTAC	2 cut(s)	192, 288
RsaNI	GTAC	2 cut(s)	191, 287
SaqAI	TTAA	3 cut(s)	27, 522, 631
SatI	GCNGC	3 cut(s)	165, 295, 593
Sau3AI	GATC	4 cut(s)	185, 279, 315, 562
Sau96I	GGNCC	1 cut(s)	451
ScaI	AGTACT	1 cut(s)	288
SduI	GDGCHC	1 cut(s)	390
SetI	ASST	8 cut(s)	250, 270, 312, 326, 353, 448, 506, 558
SfaNI	GCATC	2 cut(s)	114, 185
Sfr274I	CTCGAG	1 cut(s)	375
SinI	GGWCC	1 cut(s)	451
SlaI	CTCGAG	1 cut(s)	375
SmlI	CTYRAG	1 cut(s)	375
SmoI	CTYRAG	1 cut(s)	375
Sse9I	AATT	3 cut(s)	135, 253, 628
SsiI	CCGC	3 cut(s)	165, 230, 295
SspMI	CTAG	2 cut(s)	348, 618
TaaI	ACNGT	2 cut(s)	77, 496
TaiI	ACGT	1 cut(s)	326
TaqI	TCGA	2 cut(s)	201, 376
TasI	AATT	3 cut(s)	135, 253, 628
TatI	WGTACW	1 cut(s)	286
TauI	GCSGC	2 cut(s)	167, 297
TfiI	GAWTC	2 cut(s)	598, 608
Tru1I	TTAA	3 cut(s)	27, 522, 631
Tru9I	TTAA	3 cut(s)	27, 522, 631
TscAI	CASTG	2 cut(s)	82, 390
TseI	GCWGC	1 cut(s)	592
TspDTI	ATGAA	1 cut(s)	254
TspGWI	ACGGA	2 cut(s)	178, 540
TspRI	CASTG	2 cut(s)	82, 390
VneI	GTGCAC	1 cut(s)	386
VpaK11BI	GGWCC	1 cut(s)	451
VspI	ATTAAT	1 cut(s)	27
XceI	RCATGY	1 cut(s)	16
XhoI	CTCGAG	1 cut(s)	375
XmiI	GTMKAC	1 cut(s)	537
XmnI	GAANNNNTTC	1 cut(s)	220
XspI	CTAG	2 cut(s)	348, 618
ZraI	GACGTC	1 cut(s)	324
ZrmI	AGTACT	1 cut(s)	288
Zsp2I	ATGCAT	1 cut(s)	178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.