Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0006649

Physical Location & Seq

Genomic Coordinates Reverse (-)

4491926 .. 4492675

Gene Structure 750 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00282420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGGATAATGATCAACCTTGTGCGAATTCCATTATTGACGATAGCCAAAAGAAGATGATGCATAGAGATATTGAAAGGAAAAGAAGACAAGAAATGGCCGCCCTTTATGCATCACTCAGATCCACACTCCCTCCTCAGTCTATCAAGGCAAAGCGTTCATTGGCAGATCATATGAACGACGCTGTGAATCATATAAAACAACTGCAAACGAGGATCAAAGAACTCGGTGCCCAGAGAGATGACCTAAAGATACAAACGTCGTCGCCGGATTTGAGTTGTACTAGTGCTCTTGGCCTAGCTGGGAATCTTAGTGGATCTACTGGTAGCTCTTCATCATTGTTAGCAGGCAACTTTTCAAGAAGCCGTGTTGCAGTCAACCCTTGCTTAGGTGGCGTTGAGATTGTAATAATCAGCTGTGTTACTGGTGCTTCTGCAGAGCCACATGGTGTGGTCTTATCAAGATTGCTGCAAATACTGCTTGAACAAGGACTTACTGTAATTAATTGTGCTACTACCCAGGTTAACAAAAGGCTTGTCTACACCATACAATCCGAGGTAGCTAGTCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044798 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0090575 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

189

Amino Acids

20.37

Weight (kDa)

8.9

Isoelectric Point (pI)

66.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	17 - 69	2.7e-11	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006649)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25400 AT4G25400 AT4G25410 AT5G51780 AT5G51780 AT5G51790 AT5G51790 AT5G51790 AT5G51790
fragaria_vesca	FvH4_7g28600 FvH4_7g28600 FvH4_7g28600
malus_domestica	MD01G1191600.v1.1
prunus_persica	Prupe.2G286000_v2.0.a1 Prupe.2G286000_v2.0.a1
pyrus_communis	pycom01g20280 pycom07g23850
rosa_chinensis	RchiOBHm_Chr1g0376011
rosa_laevigata	RLG00000026635
rosa_multiflora	Rmu_ssc0000116.1_g000014
rosa_roxburghii	Rroxscaffold_4G00282420
rosa_rugosa	Rorug01G0393700
rosa_samantha	Rh1BG368500 Rh1CG381400 Rh1DG398400
rosa_wichuraiana	Rw1G035920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	227
AccI	GTMKAC	1 cut(s)	537
AciI	CCGC	1 cut(s)	99
AclWI	GGATC	3 cut(s)	114, 221, 322
AcoI	YGGCCR	1 cut(s)	96
AcsI	RAATTY	1 cut(s)	25
AdeI	CACNNNGTG	1 cut(s)	446
AfaI	GTAC	1 cut(s)	280
AfiI	CCNNNNNNNGG	1 cut(s)	386
AgsI	TTSAA	3 cut(s)	74, 357, 482
AhlI	ACTAGT	1 cut(s)	281
AjnI	CCWGG	1 cut(s)	516
AluBI	AGCT	4 cut(s)	299, 327, 414, 560
AluI	AGCT	4 cut(s)	299, 327, 414, 560
Alw21I	GWGCWC	1 cut(s)	289
AlwI	GGATC	3 cut(s)	114, 221, 322
AoxI	GGCC	2 cut(s)	96, 292
ApeKI	GCWGC	1 cut(s)	466
ApoI	RAATTY	1 cut(s)	25
ArsI	GACNNNNNNTTYG	2 cut(s)	519, 551
AseI	ATTAAT	1 cut(s)	501
BaeGI	GKGCMC	1 cut(s)	232
BaeI	ACNNNNGTAYC	2 cut(s)	242, 275
BanI	GGYRCC	1 cut(s)	227
BbsI	GAAGAC	1 cut(s)	91
Bbv12I	GWGCWC	1 cut(s)	289
BbvI	GCAGC	1 cut(s)	453
BceAI	ACGGC	1 cut(s)	348
BciT130I	CCWGG	1 cut(s)	518
BclI	TGATCA	1 cut(s)	10
BcuI	ACTAGT	1 cut(s)	281
BfaI	CTAG	3 cut(s)	282, 296, 561
BfmI	CTRYAG	1 cut(s)	432
BisI	GCNGC	2 cut(s)	99, 467
BlsI	GCNGC	2 cut(s)	100, 468
Bme1390I	CCNGG	1 cut(s)	518
BmiI	GGNNCC	1 cut(s)	229
BmrFI	CCNGG	1 cut(s)	518
BmsI	GCATC	2 cut(s)	48, 119
BpiI	GAAGAC	1 cut(s)	91
Bpu10I	CCTNAGC	1 cut(s)	385
BsaBI	GATNNNNATC	1 cut(s)	9
BsaJI	CCNNGG	2 cut(s)	516, 552
BsaXI	ACNNNNNCTCC	2 cut(s)	115, 145
Bsc4I	CCNNNNNNNGG	1 cut(s)	386
Bse1I	ACTGG	2 cut(s)	325, 427
Bse8I	GATNNNNATC	1 cut(s)	9
BseBI	CCWGG	1 cut(s)	518
BseDI	CCNNGG	2 cut(s)	516, 552
BseJI	GATNNNNATC	1 cut(s)	9
BseLI	CCNNNNNNNGG	1 cut(s)	386
BseMII	CTCAG	2 cut(s)	130, 149
BseNI	ACTGG	2 cut(s)	325, 427
BseRI	GAGGAG	1 cut(s)	123
BseSI	GKGCMC	1 cut(s)	232
BseXI	GCAGC	1 cut(s)	453
BseYI	CCCAGC	1 cut(s)	299
BshFI	GGCC	2 cut(s)	98, 294
BshNI	GGYRCC	1 cut(s)	227
BsiHKAI	GWGCWC	1 cut(s)	289
BsiSI	CCGG	1 cut(s)	266
BslI	CCNNNNNNNGG	1 cut(s)	386
BsnI	GGCC	2 cut(s)	98, 294
Bsp1286I	GDGCHC	2 cut(s)	232, 289
Bsp143I	GATC	5 cut(s)	10, 119, 166, 213, 314
BspACI	CCGC	1 cut(s)	99
BspANI	GGCC	2 cut(s)	98, 294
BspCNI	CTCAG	2 cut(s)	129, 148
BspLI	GGNNCC	1 cut(s)	229
BspMAI	CTGCAG	1 cut(s)	436
BspPI	GGATC	3 cut(s)	114, 221, 322
BspQI	GCTCTTC	1 cut(s)	334
BspT107I	GGYRCC	1 cut(s)	227
BsrI	ACTGG	2 cut(s)	325, 427
BssECI	CCNNGG	2 cut(s)	516, 552
BssMI	GATC	5 cut(s)	10, 119, 166, 213, 314
Bst2UI	CCWGG	1 cut(s)	518
Bst4CI	ACNGT	1 cut(s)	496
Bst6I	CTCTTC	1 cut(s)	334
BstAPI	GCANNNNNTGC	1 cut(s)	475
BstC8I	GCNNGC	1 cut(s)	346
BstDEI	CTNAG	4 cut(s)	116, 135, 308, 385
BstENI	CCTNNNNNAGG	1 cut(s)	384
BstKTI	GATC	5 cut(s)	13, 122, 169, 216, 317
BstMBI	GATC	5 cut(s)	10, 119, 166, 213, 314
BstMWI	GCNNNNNNNGC	3 cut(s)	107, 390, 475
BstNI	CCWGG	1 cut(s)	518
BstSCI	CCNGG	1 cut(s)	516
BstSFI	CTRYAG	1 cut(s)	432
BstSLI	GKGCMC	1 cut(s)	232
BstV1I	GCAGC	1 cut(s)	453
BstV2I	GAAGAC	1 cut(s)	91
BstX2I	RGATCY	2 cut(s)	119, 314
BstYI	RGATCY	2 cut(s)	119, 314
BsuRI	GGCC	2 cut(s)	98, 294
Cac8I	GCNNGC	1 cut(s)	346
CseI	GACGC	1 cut(s)	188
Csp6I	GTAC	1 cut(s)	279
CviAII	CATG	1 cut(s)	443
CviQI	GTAC	1 cut(s)	279
DdeI	CTNAG	4 cut(s)	116, 135, 308, 385
DpnI	GATC	5 cut(s)	12, 121, 168, 215, 316
DpnII	GATC	5 cut(s)	10, 119, 166, 213, 314
DraIII	CACNNNGTG	1 cut(s)	446
EaeI	YGGCCR	1 cut(s)	96
Eam1104I	CTCTTC	1 cut(s)	334
EarI	CTCTTC	1 cut(s)	334
EcoNI	CCTNNNNNAGG	1 cut(s)	384
EcoRI	GAATTC	1 cut(s)	25
EcoRII	CCWGG	1 cut(s)	516
EcoT22I	ATGCAT	2 cut(s)	63, 112
FaeI	CATG	1 cut(s)	446
FaiI	YATR	8 cut(s)	63, 108, 171, 173, 192, 194, 444, 545
FatI	CATG	1 cut(s)	442
FauNDI	CATATG	1 cut(s)	171
FbaI	TGATCA	1 cut(s)	10
FblI	GTMKAC	1 cut(s)	537
Fnu4HI	GCNGC	2 cut(s)	99, 467
Fsp4HI	GCNGC	2 cut(s)	99, 467
FspBI	CTAG	3 cut(s)	282, 296, 561
GluI	GCNGC	2 cut(s)	99, 467
GsaI	CCCAGC	1 cut(s)	303
HaeIII	GGCC	2 cut(s)	98, 294
HapII	CCGG	1 cut(s)	266
HgaI	GACGC	1 cut(s)	188
Hin1II	CATG	1 cut(s)	446
HincII	GTYRAC	2 cut(s)	376, 523
HindII	GTYRAC	2 cut(s)	376, 523
HinfI	GANTC	2 cut(s)	187, 304
HpaI	GTTAAC	1 cut(s)	523
HpaII	CCGG	1 cut(s)	266
Hpy166II	GTNNAC	3 cut(s)	376, 523, 538
Hpy188I	TCNGA	2 cut(s)	119, 553
Hpy188III	TCNNGA	2 cut(s)	357, 459
Hpy8I	GTNNAC	3 cut(s)	376, 523, 538
Hpy99I	CGWCG	3 cut(s)	182, 262, 265
HpyCH4III	ACNGT	1 cut(s)	496
HpyCH4IV	ACGT	1 cut(s)	257
HpyCH4V	TGCA	6 cut(s)	61, 110, 205, 371, 434, 469
HpyF10VI	GCNNNNNNNGC	3 cut(s)	107, 390, 475
HpyF3I	CTNAG	4 cut(s)	116, 135, 308, 385
HpySE526I	ACGT	1 cut(s)	257
Hsp92II	CATG	1 cut(s)	446
Ksp22I	TGATCA	1 cut(s)	10
KspAI	GTTAAC	1 cut(s)	523
Kzo9I	GATC	5 cut(s)	10, 119, 166, 213, 314
LguI	GCTCTTC	1 cut(s)	334
LpnPI	CCDG	8 cut(s)	245, 279, 285, 306, 330, 408, 503, 530
Lsp1109I	GCAGC	1 cut(s)	453
LweI	GCATC	2 cut(s)	48, 119
MaeI	CTAG	3 cut(s)	282, 296, 561
MaeII	ACGT	1 cut(s)	257
MaeIII	GTNAC	1 cut(s)	418
MalI	GATC	5 cut(s)	12, 121, 168, 215, 316
MboI	GATC	5 cut(s)	10, 119, 166, 213, 314
MboII	GAAGA	3 cut(s)	64, 96, 321
MflI	RGATCY	2 cut(s)	119, 314
MhlI	GDGCHC	2 cut(s)	232, 289
MluCI	AATT	3 cut(s)	25, 498, 502
MnlI	CCTC	4 cut(s)	141, 144, 204, 547
Mph1103I	ATGCAT	2 cut(s)	63, 112
MseI	TTAA	2 cut(s)	501, 522
MspA1I	CMGCKG	1 cut(s)	414
MspI	CCGG	1 cut(s)	266
MspR9I	CCNGG	1 cut(s)	518
MvaI	CCWGG	1 cut(s)	518
MwoI	GCNNNNNNNGC	3 cut(s)	107, 390, 475
NdeI	CATATG	1 cut(s)	171
NdeII	GATC	5 cut(s)	10, 119, 166, 213, 314
NlaIII	CATG	1 cut(s)	446
NlaIV	GGNNCC	1 cut(s)	229
NsiI	ATGCAT	2 cut(s)	63, 112
PciSI	GCTCTTC	1 cut(s)	334
PfeI	GAWTC	2 cut(s)	187, 304
PkrI	GCNGC	2 cut(s)	100, 468
PshBI	ATTAAT	1 cut(s)	501
Psp6I	CCWGG	1 cut(s)	516
PspFI	CCCAGC	1 cut(s)	299
PspGI	CCWGG	1 cut(s)	516
PspN4I	GGNNCC	1 cut(s)	229
PstI	CTGCAG	1 cut(s)	436
PsuI	RGATCY	2 cut(s)	119, 314
PvuII	CAGCTG	1 cut(s)	414
RsaI	GTAC	1 cut(s)	280
RsaNI	GTAC	1 cut(s)	279
SapI	GCTCTTC	1 cut(s)	334
SaqAI	TTAA	2 cut(s)	501, 522
SatI	GCNGC	2 cut(s)	99, 467
Sau3AI	GATC	5 cut(s)	10, 119, 166, 213, 314
ScrFI	CCNGG	1 cut(s)	518
SduI	GDGCHC	2 cut(s)	232, 289
SfaNI	GCATC	2 cut(s)	48, 119
SfcI	CTRYAG	1 cut(s)	432
SpeI	ACTAGT	1 cut(s)	281
Sse9I	AATT	3 cut(s)	25, 498, 502
SsiI	CCGC	1 cut(s)	99
SspMI	CTAG	3 cut(s)	282, 296, 561
StyD4I	CCNGG	1 cut(s)	516
TaaI	ACNGT	1 cut(s)	496
TaiI	ACGT	1 cut(s)	260
TasI	AATT	3 cut(s)	25, 498, 502
TatI	WGTACW	1 cut(s)	278
TauI	GCSGC	1 cut(s)	101
TfiI	GAWTC	2 cut(s)	187, 304
Tru1I	TTAA	2 cut(s)	501, 522
Tru9I	TTAA	2 cut(s)	501, 522
TseI	GCWGC	1 cut(s)	466
TspDTI	ATGAA	3 cut(s)	147, 188, 321
VspI	ATTAAT	1 cut(s)	501
XagI	CCTNNNNNAGG	1 cut(s)	384
XapI	RAATTY	1 cut(s)	25
XmiI	GTMKAC	1 cut(s)	537
XspI	CTAG	3 cut(s)	282, 296, 561
Zsp2I	ATGCAT	2 cut(s)	63, 112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.