Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0006649

Physical Location & Seq

Genomic Coordinates Forward (+)

24635463 .. 24636431

Gene Structure 969 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g23850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGTACGCTGCTTCAATGGATGTCGGTATGTTCAATAACCTTAATACAGGAGGCCAGCGGAGAAAATCATCATTAGCGCCGACTTCATATGGTGCGAAAAATCAAGATAAGCCAAATGATGATGATGAGAAAAAGAAGATGATGCATAGAGAAATTGAAAAGAAAAGAAGGCAAGAAATGGCCAACCTTTATGGATCACTTAGATCCGTACTTCCTCTTGAATTTATCAAGGGAAAGCGTTCGTTAGCGGATCATATGAACGAGGCAGTGAATTATATCAAACACCTGCAAAAGAGGATCAAAATATTTGGTGTCAAGAGAGATGAGCTAAAGATGGGGTCCTCGTCCAATTTGAGTGCTAGGAATCTAGACCATGGGAGCAGTGGTAGCTCATCAACTTCAACAAGTACCCTAGTTGCAGTCCACCCTTGCTTAGCCGGGGTTGAGATTGTAGTCAGTACCGACGGATCTGCGGAGCAGTTTTTTCTGCTATCAAGAATGCTGAAAATACTTCTTGGACAAGGACTCAGTGTAATCAGCTGTGCTACTGCCCAAGTTAACAAAAGGCTTGTCTACACCATCCAATCTGAGGTTAGCGATCCAACATGCATAGACTTTTCTGGGTTGCAGCAGACTCTGACTGAAGTCTGTTATCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002790 GO:0003674 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006897 GO:0006909 GO:0007154 GO:0007155 GO:0007165 GO:0008104 GO:0008150 GO:0008283 GO:0009306 GO:0009605 GO:0009607 GO:0009624 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016192 GO:0022610 GO:0023052 GO:0030587 GO:0031224 GO:0031226 GO:0031589 GO:0032502 GO:0032940 GO:0033036 GO:0033299 GO:0034613 GO:0038023 GO:0042886 GO:0043207 GO:0044425 GO:0044459 GO:0044464 GO:0045184 GO:0046903 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051703 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0072657 GO:0090702 GO:0098657 GO:0099120

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EMP70 Snf7

Protein Analysis

220

Amino Acids

24.22

Weight (kDa)

9.24

Isoelectric Point (pI)

54.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	45 - 97	2.3e-12	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006649)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25400 AT4G25400 AT4G25410 AT5G51780 AT5G51780 AT5G51790 AT5G51790 AT5G51790 AT5G51790
fragaria_vesca	FvH4_7g28600 FvH4_7g28600 FvH4_7g28600
malus_domestica	MD01G1191600.v1.1
prunus_persica	Prupe.2G286000_v2.0.a1 Prupe.2G286000_v2.0.a1
pyrus_communis	pycom01g20280 pycom07g23850
rosa_chinensis	RchiOBHm_Chr1g0376011
rosa_laevigata	RLG00000026635
rosa_multiflora	Rmu_ssc0000116.1_g000014
rosa_roxburghii	Rroxscaffold_4G00282420
rosa_rugosa	Rorug01G0393700
rosa_samantha	Rh1BG368500 Rh1CG381400 Rh1DG398400
rosa_wichuraiana	Rw1G035920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	294
Acc36I	ACCTGC	1 cut(s)	294
AccI	GTMKAC	1 cut(s)	573
AciI	CCGC	3 cut(s)	58, 248, 473
AclWI	GGATC	6 cut(s)	198, 202, 258, 305, 475, 593
AcoI	YGGCCR	1 cut(s)	180
AcsI	RAATTY	1 cut(s)	221
AfaI	GTAC	4 cut(s)	5, 210, 409, 460
AfiI	CCNNNNNNNGG	1 cut(s)	589
AgsI	TTSAA	5 cut(s)	15, 34, 158, 221, 402
AluBI	AGCT	3 cut(s)	328, 390, 540
AluI	AGCT	3 cut(s)	328, 390, 540
AlwI	GGATC	6 cut(s)	198, 202, 258, 305, 475, 593
AlwNI	CAGNNNCTG	1 cut(s)	637
AoxI	GGCC	2 cut(s)	52, 180
ApeKI	GCWGC	2 cut(s)	8, 628
ApoI	RAATTY	1 cut(s)	221
ArsI	GACNNNNNNTTYG	2 cut(s)	555, 587
Asp700I	GAANNNNTTC	1 cut(s)	238
AspLEI	GCGC	1 cut(s)	79
AspS9I	GGNCC	1 cut(s)	339
AsuC2I	CCSGG	1 cut(s)	439
AvaII	GGWCC	1 cut(s)	339
BalI	TGGCCA	1 cut(s)	182
BbvI	GCAGC	1 cut(s)	640
BccI	CCATC	2 cut(s)	328, 587
BcgI	CGANNNNNNTGC	2 cut(s)	452, 486
BcnI	CCSGG	1 cut(s)	439
BfaI	CTAG	3 cut(s)	360, 368, 413
BfoI	RGCGCY	1 cut(s)	80
BfuAI	ACCTGC	1 cut(s)	294
BisI	GCNGC	2 cut(s)	9, 629
BlpI	GCTNAGC	1 cut(s)	433
BlsI	GCNGC	2 cut(s)	10, 630
Bme1390I	CCNGG	1 cut(s)	439
Bme18I	GGWCC	1 cut(s)	339
BmgT120I	GGNCC	1 cut(s)	339
BmiI	GGNNCC	1 cut(s)	340
BmrFI	CCNGG	1 cut(s)	439
BmsI	GCATC	1 cut(s)	132
BoxI	GACNNNNGTC	1 cut(s)	644
Bpu1102I	GCTNAGC	1 cut(s)	433
BpuMI	CCSGG	1 cut(s)	439
BsaJI	CCNNGG	2 cut(s)	373, 438
BsaXI	ACNNNNNCTCC	2 cut(s)	370, 400
Bsc4I	CCNNNNNNNGG	1 cut(s)	589
BseDI	CCNNGG	2 cut(s)	373, 438
BseGI	GGATG	2 cut(s)	25, 579
BseLI	CCNNNNNNNGG	1 cut(s)	589
BseMII	CTCAG	2 cut(s)	541, 579
BseXI	GCAGC	1 cut(s)	640
BshFI	GGCC	2 cut(s)	54, 182
BsiSI	CCGG	1 cut(s)	438
BslI	CCNNNNNNNGG	1 cut(s)	589
BsmI	GAATGC	1 cut(s)	504
BsnI	GGCC	2 cut(s)	54, 182
Bsp143I	GATC	6 cut(s)	194, 203, 250, 297, 467, 598
Bsp1720I	GCTNAGC	1 cut(s)	433
Bsp19I	CCATGG	1 cut(s)	373
BspACI	CCGC	3 cut(s)	58, 248, 473
BspANI	GGCC	2 cut(s)	54, 182
BspCNI	CTCAG	2 cut(s)	540, 580
BspLI	GGNNCC	1 cut(s)	340
BspMI	ACCTGC	1 cut(s)	294
BspPI	GGATC	6 cut(s)	198, 202, 258, 305, 475, 593
BssECI	CCNNGG	2 cut(s)	373, 438
BssMI	GATC	6 cut(s)	194, 203, 250, 297, 467, 598
BssT1I	CCWWGG	1 cut(s)	373
BstC8I	GCNNGC	1 cut(s)	56
BstDEI	CTNAG	4 cut(s)	200, 433, 527, 588
BstDSI	CCRYGG	1 cut(s)	373
BstF5I	GGATG	2 cut(s)	25, 579
BstH2I	RGCGCY	1 cut(s)	80
BstHHI	GCGC	1 cut(s)	79
BstKTI	GATC	6 cut(s)	197, 206, 253, 300, 470, 601
BstMBI	GATC	6 cut(s)	194, 203, 250, 297, 467, 598
BstMWI	GCNNNNNNNGC	1 cut(s)	387
BstNSI	RCATGY	1 cut(s)	609
BstPAI	GACNNNNGTC	1 cut(s)	644
BstSCI	CCNGG	1 cut(s)	437
BstV1I	GCAGC	1 cut(s)	640
BstX2I	RGATCY	2 cut(s)	203, 467
BstYI	RGATCY	2 cut(s)	203, 467
BsuRI	GGCC	2 cut(s)	54, 182
BtgI	CCRYGG	1 cut(s)	373
BtsCI	GGATG	2 cut(s)	25, 579
BtsI	GCAGTG	2 cut(s)	273, 388
BtsIMutI	CAGTG	3 cut(s)	273, 388, 535
BveI	ACCTGC	1 cut(s)	294
Cac8I	GCNNGC	1 cut(s)	56
CaiI	CAGNNNCTG	1 cut(s)	637
CfoI	GCGC	1 cut(s)	79
Cfr13I	GGNCC	1 cut(s)	339
Csp6I	GTAC	4 cut(s)	4, 209, 408, 459
CviAII	CATG	2 cut(s)	374, 606
CviJI	RGCY	8 cut(s)	54, 112, 182, 328, 390, 437, 540, 568
CviKI_1	RGCY	8 cut(s)	54, 112, 182, 328, 390, 437, 540, 568
CviQI	GTAC	4 cut(s)	4, 209, 408, 459
DdeI	CTNAG	4 cut(s)	200, 433, 527, 588
DpnI	GATC	6 cut(s)	196, 205, 252, 299, 469, 600
DpnII	GATC	6 cut(s)	194, 203, 250, 297, 467, 598
EaeI	YGGCCR	1 cut(s)	180
Eco130I	CCWWGG	1 cut(s)	373
Eco47I	GGWCC	1 cut(s)	339
EcoO109I	RGGNCCY	1 cut(s)	339
EcoT14I	CCWWGG	1 cut(s)	373
EcoT22I	ATGCAT	2 cut(s)	147, 611
ErhI	CCWWGG	1 cut(s)	373
FaeI	CATG	2 cut(s)	377, 609
FatI	CATG	2 cut(s)	373, 605
FauNDI	CATATG	2 cut(s)	88, 255
FblI	GTMKAC	1 cut(s)	573
Fnu4HI	GCNGC	2 cut(s)	9, 629
FokI	GGATG	2 cut(s)	32, 566
Fsp4HI	GCNGC	2 cut(s)	9, 629
FspBI	CTAG	3 cut(s)	360, 368, 413
GlaI	GCGC	1 cut(s)	78
GluI	GCNGC	2 cut(s)	9, 629
HaeII	RGCGCY	1 cut(s)	80
HaeIII	GGCC	2 cut(s)	54, 182
HapII	CCGG	1 cut(s)	438
HhaI	GCGC	1 cut(s)	79
Hin1II	CATG	2 cut(s)	377, 609
Hin6I	GCGC	1 cut(s)	77
HinP1I	GCGC	1 cut(s)	77
HincII	GTYRAC	1 cut(s)	559
HindII	GTYRAC	1 cut(s)	559
HinfI	GANTC	3 cut(s)	364, 525, 634
HpaI	GTTAAC	1 cut(s)	559
HpaII	CCGG	1 cut(s)	438
Hpy166II	GTNNAC	3 cut(s)	424, 559, 574
Hpy188I	TCNGA	2 cut(s)	589, 639
Hpy188III	TCNNGA	5 cut(s)	104, 218, 316, 368, 495
Hpy8I	GTNNAC	3 cut(s)	424, 559, 574
Hpy99I	CGWCG	1 cut(s)	467
HpyAV	CCTTC	1 cut(s)	162
HpyCH4V	TGCA	5 cut(s)	145, 289, 419, 609, 628
HpyF10VI	GCNNNNNNNGC	1 cut(s)	387
HpyF3I	CTNAG	4 cut(s)	200, 433, 527, 588
Hsp92II	CATG	2 cut(s)	377, 609
HspAI	GCGC	1 cut(s)	77
KspAI	GTTAAC	1 cut(s)	559
Kzo9I	GATC	6 cut(s)	194, 203, 250, 297, 467, 598
LmnI	GCTCC	2 cut(s)	378, 475
LpnPI	CCDG	5 cut(s)	33, 68, 299, 451, 606
Lsp1109I	GCAGC	1 cut(s)	640
LweI	GCATC	1 cut(s)	132
MaeI	CTAG	3 cut(s)	360, 368, 413
MalI	GATC	6 cut(s)	196, 205, 252, 299, 469, 600
MboI	GATC	6 cut(s)	194, 203, 250, 297, 467, 598
MboII	GAAGA	1 cut(s)	148
MflI	RGATCY	2 cut(s)	203, 467
MlsI	TGGCCA	1 cut(s)	182
MluCI	AATT	4 cut(s)	153, 221, 271, 349
MluNI	TGGCCA	1 cut(s)	182
MlyI	GAGTC	2 cut(s)	519, 628
MmeI	TCCRAC	1 cut(s)	626
MnlI	CCTC	6 cut(s)	44, 225, 256, 288, 352, 583
Mox20I	TGGCCA	1 cut(s)	182
Mph1103I	ATGCAT	2 cut(s)	147, 611
MroXI	GAANNNNTTC	1 cut(s)	238
MscI	TGGCCA	1 cut(s)	182
MseI	TTAA	2 cut(s)	42, 558
Msp20I	TGGCCA	1 cut(s)	182
MspA1I	CMGCKG	2 cut(s)	58, 540
MspI	CCGG	1 cut(s)	438
MspR9I	CCNGG	1 cut(s)	439
Mva1269I	GAATGC	1 cut(s)	504
MwoI	GCNNNNNNNGC	1 cut(s)	387
NciI	CCSGG	1 cut(s)	439
NcoI	CCATGG	1 cut(s)	373
NdeI	CATATG	2 cut(s)	88, 255
NdeII	GATC	6 cut(s)	194, 203, 250, 297, 467, 598
NlaIII	CATG	2 cut(s)	377, 609
NlaIV	GGNNCC	1 cut(s)	340
NsiI	ATGCAT	2 cut(s)	147, 611
NspI	RCATGY	1 cut(s)	609
PaqCI	CACCTGC	1 cut(s)	294
PctI	GAATGC	1 cut(s)	504
PdmI	GAANNNNTTC	1 cut(s)	238
PfeI	GAWTC	1 cut(s)	364
PkrI	GCNGC	2 cut(s)	10, 630
PleI	GAGTC	2 cut(s)	519, 628
PpsI	GAGTC	2 cut(s)	519, 628
PpuMI	RGGWCCY	1 cut(s)	339
PshAI	GACNNNNGTC	1 cut(s)	644
Psp5II	RGGWCCY	1 cut(s)	339
PspN4I	GGNNCC	1 cut(s)	340
PspPI	GGNCC	1 cut(s)	339
PspPPI	RGGWCCY	1 cut(s)	339
PstNI	CAGNNNCTG	1 cut(s)	637
PsuI	RGATCY	2 cut(s)	203, 467
PvuII	CAGCTG	1 cut(s)	540
RsaI	GTAC	4 cut(s)	5, 210, 409, 460
RsaNI	GTAC	4 cut(s)	4, 209, 408, 459
SaqAI	TTAA	2 cut(s)	42, 558
SatI	GCNGC	2 cut(s)	9, 629
Sau3AI	GATC	6 cut(s)	194, 203, 250, 297, 467, 598
Sau96I	GGNCC	1 cut(s)	339
SchI	GAGTC	2 cut(s)	519, 628
ScrFI	CCNGG	1 cut(s)	439
SetI	ASST	7 cut(s)	42, 189, 288, 330, 392, 542, 594
SfaNI	GCATC	1 cut(s)	132
SinI	GGWCC	1 cut(s)	339
Sse9I	AATT	4 cut(s)	153, 221, 271, 349
SsiI	CCGC	3 cut(s)	58, 248, 473
SspI	AATATT	1 cut(s)	306
SspMI	CTAG	3 cut(s)	360, 368, 413
StyD4I	CCNGG	1 cut(s)	437
StyI	CCWWGG	1 cut(s)	373
TasI	AATT	4 cut(s)	153, 221, 271, 349
TfiI	GAWTC	1 cut(s)	364
Tru1I	TTAA	2 cut(s)	42, 558
Tru9I	TTAA	2 cut(s)	42, 558
TscAI	CASTG	3 cut(s)	273, 388, 535
TseI	GCWGC	2 cut(s)	8, 628
TspDTI	ATGAA	2 cut(s)	75, 272
TspGWI	ACGGA	2 cut(s)	196, 480
TspRI	CASTG	3 cut(s)	273, 388, 535
VpaK11BI	GGWCC	1 cut(s)	339
XapI	RAATTY	1 cut(s)	221
XbaI	TCTAGA	1 cut(s)	367
XceI	RCATGY	1 cut(s)	609
XcmI	CCANNNNNNNNNTGG	1 cut(s)	380
XmiI	GTMKAC	1 cut(s)	573
XmnI	GAANNNNTTC	1 cut(s)	238
XspI	CTAG	3 cut(s)	360, 368, 413
Zsp2I	ATGCAT	2 cut(s)	147, 611

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.