Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006649

Physical Location & Seq

Genomic Coordinates Forward (+)

21039533 .. 21041618

Gene Structure 2086 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G51790.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGAATCCTTCTAACAATCCTAAAAAGACAAGGCACCAGAGTCATATGCCTCAAGAAAGAGATGAAACGAAGAAGGAGAAGAAGCTTCTCCACCGCAACATCGAACGACAAAGAAGACAAGAAATGGCGATCCTTTTCGCCTCTCTTCGTAGTCAGCTACCTCTAAAATACATCAAGGGAAAGAGAGCCATGTCAGATCATGTAAACGGAGCAGTAAGTTTCATCAAAGACACGCAAACAAGGATAAAAGATCTCTCCGCAAGAAGAGACGAGCTAAAGCGAGAGATTGGTGACCCTACTAGTCTAACTGGATCCGGATCCGGATCTGGATCAAGTAGATCGGAACCAGCTAGTGTCATGGTGCAACCGTGTGTGAGCGGCTTCGAGGTGGTTGTGAGCAGCTTAGCATCAGGTCTCGAGGCTTGGCCACTCTCAAGAGTTCTTGAAGTTCTTCACGGGCAAGGACTTGAAGTCATCAGCTCTTTAACAGCACGAGTCAACGAGAGGCTCATGTACACTATACAAGTCGAGGTAAATAGCTTTGATTGCTTCGACTTAGCTTGGTTGCAGCAGAAGCTAATTGAGCAGTTAGTACTTTCCACGACTAGGCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044798 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0090575 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

204

Amino Acids

23.0

Weight (kDa)

9.61

Isoelectric Point (pI)

55.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	93 - 143	1.1e-06	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006649)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25400 AT4G25400 AT4G25410 AT5G51780 AT5G51780 AT5G51790 AT5G51790 AT5G51790 AT5G51790
fragaria_vesca	FvH4_7g28600 FvH4_7g28600 FvH4_7g28600
malus_domestica	MD01G1191600.v1.1
prunus_persica	Prupe.2G286000_v2.0.a1 Prupe.2G286000_v2.0.a1
pyrus_communis	pycom01g20280 pycom07g23850
rosa_chinensis	RchiOBHm_Chr1g0376011
rosa_laevigata	RLG00000026635
rosa_multiflora	Rmu_ssc0000116.1_g000014
rosa_roxburghii	Rroxscaffold_4G00282420
rosa_rugosa	Rorug01G0393700
rosa_samantha	Rh1BG368500 Rh1CG381400 Rh1DG398400
rosa_wichuraiana	Rw1G035920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	33
AccBSI	CCGCTC	1 cut(s)	378
AccIII	TCCGGA	2 cut(s)	314, 320
AciI	CCGC	3 cut(s)	94, 258, 378
AclWI	GGATC	7 cut(s)	124, 306, 312, 319, 325, 331, 337
AcoI	YGGCCR	1 cut(s)	425
AfaI	GTAC	2 cut(s)	515, 594
AfiI	CCNNNNNNNGG	1 cut(s)	606
AgsI	TTSAA	2 cut(s)	446, 470
AhdI	GACNNNNNGTC	1 cut(s)	470
AhlI	ACTAGT	1 cut(s)	299
AluBI	AGCT	9 cut(s)	85, 157, 274, 350, 402, 480, 540, 560, 577
AluI	AGCT	9 cut(s)	85, 157, 274, 350, 402, 480, 540, 560, 577
Alw26I	GTCTC	2 cut(s)	261, 419
AlwI	GGATC	7 cut(s)	124, 306, 312, 319, 325, 331, 337
Ama87I	CYCGRG	1 cut(s)	416
Aor13HI	TCCGGA	2 cut(s)	314, 320
AoxI	GGCC	1 cut(s)	425
ApeKI	GCWGC	2 cut(s)	399, 568
Asp700I	GAANNNNTTC	1 cut(s)	450
AsuHPI	GGTGA	1 cut(s)	302
AvaI	CYCGRG	1 cut(s)	416
BalI	TGGCCA	1 cut(s)	427
BamHI	GGATCC	2 cut(s)	311, 317
BanI	GGYRCC	1 cut(s)	33
BauI	CACGAG	1 cut(s)	492
BbsI	GAAGAC	1 cut(s)	121
BbvI	GCAGC	2 cut(s)	411, 580
BcoDI	GTCTC	2 cut(s)	261, 419
BcuI	ACTAGT	1 cut(s)	299
BfaI	CTAG	3 cut(s)	300, 351, 606
BglII	AGATCT	1 cut(s)	250
BisI	GCNGC	3 cut(s)	379, 400, 569
BlpI	GCTNAGC	1 cut(s)	403
BlsI	GCNGC	3 cut(s)	380, 401, 570
BmcAI	AGTACT	1 cut(s)	594
BmeRI	GACNNNNNGTC	1 cut(s)	470
BmeT110I	CYCGRG	1 cut(s)	416
BmiI	GGNNCC	4 cut(s)	35, 313, 319, 345
BmsI	GCATC	1 cut(s)	416
BpiI	GAAGAC	1 cut(s)	121
Bpu1102I	GCTNAGC	1 cut(s)	403
BpuEI	CTTGAG	2 cut(s)	36, 418
BsaBI	GATNNNNATC	3 cut(s)	316, 322, 328
BsaI	GGTCTC	1 cut(s)	419
BsaWI	WCCGGW	2 cut(s)	314, 320
Bsc4I	CCNNNNNNNGG	1 cut(s)	606
Bse1I	ACTGG	1 cut(s)	313
Bse8I	GATNNNNATC	3 cut(s)	316, 322, 328
BseAI	TCCGGA	2 cut(s)	314, 320
BseJI	GATNNNNATC	3 cut(s)	316, 322, 328
BseLI	CCNNNNNNNGG	1 cut(s)	606
BseNI	ACTGG	1 cut(s)	313
BseXI	GCAGC	2 cut(s)	411, 580
BshFI	GGCC	1 cut(s)	427
BshNI	GGYRCC	1 cut(s)	33
BsiHKCI	CYCGRG	1 cut(s)	416
BsiSI	CCGG	2 cut(s)	315, 321
BslI	CCNNNNNNNGG	1 cut(s)	606
BsmAI	GTCTC	2 cut(s)	261, 419
BsmBI	CGTCTC	1 cut(s)	261
BsnI	GGCC	1 cut(s)	427
Bso31I	GGTCTC	1 cut(s)	419
BsoBI	CYCGRG	1 cut(s)	416
Bsp13I	TCCGGA	2 cut(s)	314, 320
Bsp1407I	TGTACA	1 cut(s)	513
Bsp143I	GATC	8 cut(s)	129, 196, 250, 311, 317, 323, 329, 338
Bsp1720I	GCTNAGC	1 cut(s)	403
BspACI	CCGC	3 cut(s)	94, 258, 378
BspANI	GGCC	1 cut(s)	427
BspEI	TCCGGA	2 cut(s)	314, 320
BspLI	GGNNCC	4 cut(s)	35, 313, 319, 345
BspPI	GGATC	7 cut(s)	124, 306, 312, 319, 325, 331, 337
BspT107I	GGYRCC	1 cut(s)	33
BspTNI	GGTCTC	1 cut(s)	419
BsrBI	CCGCTC	1 cut(s)	378
BsrGI	TGTACA	1 cut(s)	513
BsrI	ACTGG	1 cut(s)	313
BssMI	GATC	8 cut(s)	129, 196, 250, 311, 317, 323, 329, 338
BssSI	CACGAG	1 cut(s)	492
Bst2BI	CACGAG	1 cut(s)	492
Bst4CI	ACNGT	1 cut(s)	369
Bst6I	CTCTTC	2 cut(s)	150, 259
BstAUI	TGTACA	1 cut(s)	513
BstDEI	CTNAG	2 cut(s)	403, 556
BstEII	GGTNACC	1 cut(s)	290
BstKTI	GATC	8 cut(s)	132, 199, 253, 314, 320, 326, 332, 341
BstMAI	GTCTC	2 cut(s)	261, 419
BstMBI	GATC	8 cut(s)	129, 196, 250, 311, 317, 323, 329, 338
BstMWI	GCNNNNNNNGC	3 cut(s)	546, 574, 583
BstPI	GGTNACC	1 cut(s)	290
BstV1I	GCAGC	2 cut(s)	411, 580
BstV2I	GAAGAC	1 cut(s)	121
BstX2I	RGATCY	4 cut(s)	250, 311, 317, 323
BstYI	RGATCY	4 cut(s)	250, 311, 317, 323
BsuRI	GGCC	1 cut(s)	427
BtsIMutI	CAGTG	1 cut(s)	610
Csp6I	GTAC	2 cut(s)	514, 593
CviAII	CATG	4 cut(s)	190, 200, 358, 511
CviQI	GTAC	2 cut(s)	514, 593
DdeI	CTNAG	2 cut(s)	403, 556
DpnI	GATC	8 cut(s)	131, 198, 252, 313, 319, 325, 331, 340
DpnII	GATC	8 cut(s)	129, 196, 250, 311, 317, 323, 329, 338
DriI	GACNNNNNGTC	1 cut(s)	470
EaeI	YGGCCR	1 cut(s)	425
Eam1104I	CTCTTC	2 cut(s)	150, 259
Eam1105I	GACNNNNNGTC	1 cut(s)	470
EarI	CTCTTC	2 cut(s)	150, 259
Eco31I	GGTCTC	1 cut(s)	419
Eco88I	CYCGRG	1 cut(s)	416
Eco91I	GGTNACC	1 cut(s)	290
EcoO65I	GGTNACC	1 cut(s)	290
Esp3I	CGTCTC	1 cut(s)	261
FaeI	CATG	4 cut(s)	193, 203, 361, 514
FaiI	YATR	7 cut(s)	45, 47, 191, 201, 359, 512, 521
FatI	CATG	4 cut(s)	189, 199, 357, 510
FauNDI	CATATG	1 cut(s)	45
Fnu4HI	GCNGC	3 cut(s)	379, 400, 569
Fsp4HI	GCNGC	3 cut(s)	379, 400, 569
FspBI	CTAG	3 cut(s)	300, 351, 606
GluI	GCNGC	3 cut(s)	379, 400, 569
HaeIII	GGCC	1 cut(s)	427
HapII	CCGG	2 cut(s)	315, 321
Hin1II	CATG	4 cut(s)	193, 203, 361, 514
HincII	GTYRAC	1 cut(s)	499
HindII	GTYRAC	1 cut(s)	499
HindIII	AAGCTT	1 cut(s)	83
HinfI	GANTC	3 cut(s)	4, 40, 495
HpaII	CCGG	2 cut(s)	315, 321
HphI	GGTGA	1 cut(s)	302
Hpy166II	GTNNAC	3 cut(s)	205, 499, 516
Hpy188I	TCNGA	2 cut(s)	196, 343
Hpy188III	TCNNGA	7 cut(s)	53, 315, 321, 327, 416, 435, 443
Hpy8I	GTNNAC	3 cut(s)	205, 499, 516
HpyAV	CCTTC	2 cut(s)	18, 67
HpyCH4III	ACNGT	1 cut(s)	369
HpyCH4V	TGCA	2 cut(s)	364, 568
HpyF10VI	GCNNNNNNNGC	3 cut(s)	546, 574, 583
HpyF3I	CTNAG	2 cut(s)	403, 556
Hsp92II	CATG	4 cut(s)	193, 203, 361, 514
Kpn2I	TCCGGA	2 cut(s)	314, 320
Kzo9I	GATC	8 cut(s)	129, 196, 250, 311, 317, 323, 329, 338
LmnI	GCTCC	1 cut(s)	209
LpnPI	CCDG	7 cut(s)	50, 294, 312, 328, 334, 360, 396
Lsp1109I	GCAGC	2 cut(s)	411, 580
LweI	GCATC	1 cut(s)	416
MaeI	CTAG	3 cut(s)	300, 351, 606
MaeIII	GTNAC	1 cut(s)	290
MalI	GATC	8 cut(s)	131, 198, 252, 313, 319, 325, 331, 340
MbiI	CCGCTC	1 cut(s)	378
MboI	GATC	8 cut(s)	129, 196, 250, 311, 317, 323, 329, 338
MboII	GAAGA	6 cut(s)	82, 91, 126, 137, 276, 443
MflI	RGATCY	4 cut(s)	250, 311, 317, 323
MlsI	TGGCCA	1 cut(s)	427
MluCI	AATT	1 cut(s)	579
MluNI	TGGCCA	1 cut(s)	427
MlyI	GAGTC	2 cut(s)	49, 504
MnlI	CCTC	7 cut(s)	60, 151, 171, 379, 412, 498, 523
Mox20I	TGGCCA	1 cut(s)	427
MroI	TCCGGA	2 cut(s)	314, 320
MroXI	GAANNNNTTC	1 cut(s)	450
MscI	TGGCCA	1 cut(s)	427
MseI	TTAA	1 cut(s)	485
Msp20I	TGGCCA	1 cut(s)	427
MspI	CCGG	2 cut(s)	315, 321
MwoI	GCNNNNNNNGC	3 cut(s)	546, 574, 583
NdeI	CATATG	1 cut(s)	45
NdeII	GATC	8 cut(s)	129, 196, 250, 311, 317, 323, 329, 338
NlaIII	CATG	4 cut(s)	193, 203, 361, 514
NlaIV	GGNNCC	4 cut(s)	35, 313, 319, 345
NmuCI	GTSAC	1 cut(s)	290
PaeR7I	CTCGAG	1 cut(s)	416
PdmI	GAANNNNTTC	1 cut(s)	450
PfeI	GAWTC	1 cut(s)	4
PkrI	GCNGC	3 cut(s)	380, 401, 570
PleI	GAGTC	2 cut(s)	48, 503
PpsI	GAGTC	2 cut(s)	48, 503
PspEI	GGTNACC	1 cut(s)	290
PspN4I	GGNNCC	4 cut(s)	35, 313, 319, 345
PsuI	RGATCY	4 cut(s)	250, 311, 317, 323
RsaI	GTAC	2 cut(s)	515, 594
RsaNI	GTAC	2 cut(s)	514, 593
SaqAI	TTAA	1 cut(s)	485
SatI	GCNGC	3 cut(s)	379, 400, 569
Sau3AI	GATC	8 cut(s)	129, 196, 250, 311, 317, 323, 329, 338
ScaI	AGTACT	1 cut(s)	594
SchI	GAGTC	2 cut(s)	49, 504
SfaNI	GCATC	1 cut(s)	416
Sfr274I	CTCGAG	1 cut(s)	416
SlaI	CTCGAG	1 cut(s)	416
SmlI	CTYRAG	3 cut(s)	51, 416, 433
SmoI	CTYRAG	3 cut(s)	51, 416, 433
SpeI	ACTAGT	1 cut(s)	299
Sse9I	AATT	1 cut(s)	579
SsiI	CCGC	3 cut(s)	94, 258, 378
SspMI	CTAG	3 cut(s)	300, 351, 606
TaaI	ACNGT	1 cut(s)	369
TaqI	TCGA	5 cut(s)	102, 384, 417, 528, 552
TasI	AATT	1 cut(s)	579
TatI	WGTACW	2 cut(s)	513, 592
TauI	GCSGC	1 cut(s)	381
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	1 cut(s)	485
Tru9I	TTAA	1 cut(s)	485
TseFI	GTSAC	1 cut(s)	290
TseI	GCWGC	2 cut(s)	399, 568
Tsp45I	GTSAC	1 cut(s)	290
TspDTI	ATGAA	3 cut(s)	17, 78, 211
TspGWI	ACGGA	1 cut(s)	222
XhoI	CTCGAG	1 cut(s)	416
XmnI	GAANNNNTTC	1 cut(s)	450
XspI	CTAG	3 cut(s)	300, 351, 606
ZrmI	AGTACT	1 cut(s)	594

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.