AT4G26790

Belongs to the 'GDSL' lipolytic enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0011664
Physical Location & Seq
Forward (+)
13487457 .. 13489376
1920 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G26790.2

Sequence Viewer

Length: 1056 bp
ATGCAGCGAAACAGAGTTCTTGCGTTCTTGTTGCTAGCAGCTCAGCTCTTGGTGAAGATACCTGAAACGTGTGCAAAATTTCCCGCACTTATCGTATTTGGTGACTCAACTGTTGATTCAGGCAACAACAACCAGATTTCTACTGTTCTGAAGAGCAATTTCCAGCCATATGGCCGGGATTACTTTGACGGCAAAGCGACTGGGAGATTTTCAAATGGCCGGATTGCACCAGACTTCATTTCTGAAGGTTTGGGACTCAAGAACGCAGTCCCTGCCTACCTAGATCCAGCATACAACATTGCAGACTTTGCCACTGGTGTCTGTTTCGCTTCAGCTGGAACCGGCTTAGACAATGCAACCTCTGCCGTGTTATCTGTAATGCCGCTATGGAAGGAAGTGGAATACTACAAAGAATACCAAACCAGGCTAAGAAGCTACTTGGGTGAAGAGAAAGCTAATGAGATTATTAGTGAATCACTTTACCTGATTAGTATCGGAACCAACGATTTCCTGGAGAATTACTATCTTCTTCCCCGCAAGTTACGGAAGTACTCAGTGAACGAGTACCAATATTTCCTGATAGGAATAGCAGCAGATTTCGTGACAGATATATACAGACTCGGAGCTCGGAAGATGTCTTTGTCGGGACTCTCTCCTTTTGGATGCTTACCCCTGGAAAGAACAACTCAGCTCTTTTATGGAAGCAAATGTATTGAAGAATACAACATTGTGGCTAGAGATTTCAACATCAAGATGGAAGAGAAAGTCTTCCAGTTGAACAGAGATCTGAACGGAATCCAGCTGGTGTTTTCAAATCCATATGACCTTGTTTCAGAAATCATATACCATCCTGAAGCATTCGGTTTCGAAAACGTAAGAAGTGCGTGTTGCGGAACGGGATACTATGAGATGAGCTACTTGTGTGATAAAATGAACCCATTCACATGTTCGGATGCAAGCAAATATGTATTTTGGGACTCATTTCACCCAACAGAGAAGACAAACGCCATCGTAGCAAATCATGTTCTGAAATACGACTTATCTCGGTTTCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

351

Amino Acids

39.76

Weight (kDa)

5.43

Isoelectric Point (pI)

36.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 31 - 342 4.4e-29 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011664)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26790 AT4G26790
fragaria_vesca FvH4_3g23490 FvH4_3g23490 FvH4_3g23490
malus_domestica MD11G1210200.v1.1
prunus_persica Prupe.4G222900_v2.0.a1
pyrus_communis pycom11g18580
rosa_chinensis RchiOBHm_Chr5g0041341
rosa_laevigata RLG00000034054
rosa_multiflora Rmu_sc0000594.1_g000072
rosa_roxburghii Rroxscaffold_1G00039290
rosa_rugosa Rorug05G0191600 Rorug05G0191700
rosa_samantha Rh5AG277700 Rh5BG282400 Rh5CG314800 Rh5DG291200
rosa_wichuraiana Rw5G026140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 84, 383, 535, 891
AclWI GGATC 1 cut(s) 278
AcoI YGGCCR 2 cut(s) 172, 217
AcsI RAATTY 1 cut(s) 77
AcuI CTGAAG 4 cut(s) 170, 264, 315, 873
AfaI GTAC 2 cut(s) 551, 566
AflIII ACRYGT 2 cut(s) 68, 944
AgsI TTSAA 5 cut(s) 213, 716, 745, 778, 813
AjnI CCWGG 3 cut(s) 422, 510, 672
AluBI AGCT 9 cut(s) 41, 46, 335, 435, 455, 626, 691, 802, 915
AluI AGCT 9 cut(s) 41, 46, 335, 435, 455, 626, 691, 802, 915
Alw21I GWGCWC 1 cut(s) 628
AlwI GGATC 1 cut(s) 278
AlwNI CAGNNNCTG 1 cut(s) 272
AoxI GGCC 2 cut(s) 172, 217
ApeKI GCWGC 3 cut(s) 4, 38, 590
ApoI RAATTY 1 cut(s) 77
Asp700I GAANNNNTTC 2 cut(s) 767, 938
AsuC2I CCSGG 1 cut(s) 176
AsuHPI GGTGA 4 cut(s) 64, 113, 455, 977
AsuII TTCGAA 1 cut(s) 867
AsuNHI GCTAGC 1 cut(s) 34
BanII GRGCYC 1 cut(s) 628
BbsI GAAGAC 2 cut(s) 760, 1004
Bbv12I GWGCWC 1 cut(s) 628
BbvI GCAGC 3 cut(s) 16, 50, 602
BccI CCATC 3 cut(s) 748, 855, 1016
BceAI ACGGC 2 cut(s) 205, 350
BciT130I CCWGG 3 cut(s) 424, 512, 674
BciVI GTATCC 1 cut(s) 893
BcnI CCSGG 1 cut(s) 176
BfaI CTAG 3 cut(s) 35, 281, 735
BfuI GTATCC 1 cut(s) 893
BglII AGATCT 1 cut(s) 784
BisI GCNGC 4 cut(s) 5, 39, 383, 591
BlpI GCTNAGC 1 cut(s) 42
BlsI GCNGC 4 cut(s) 6, 40, 384, 592
BmcAI AGTACT 1 cut(s) 551
Bme1390I CCNGG 4 cut(s) 176, 424, 512, 674
BmiI GGNNCC 2 cut(s) 340, 499
BmrFI CCNGG 4 cut(s) 176, 424, 512, 674
BmrI ACTGGG 1 cut(s) 210
BmsI GCATC 2 cut(s) 653, 943
BmtI GCTAGC 1 cut(s) 38
BmuI ACTGGG 1 cut(s) 210
BpiI GAAGAC 2 cut(s) 760, 1004
BpmI CTGGAG 1 cut(s) 533
Bpu1102I GCTNAGC 1 cut(s) 42
Bpu14I TTCGAA 1 cut(s) 867
BpuEI CTTGAG 1 cut(s) 242
BpuMI CCSGG 1 cut(s) 176
BsaBI GATNNNNATC 1 cut(s) 491
BsaJI CCNNGG 1 cut(s) 672
Bse118I RCCGGY 1 cut(s) 341
Bse1I ACTGG 3 cut(s) 205, 319, 772
Bse3DI GCAATG 1 cut(s) 297
Bse8I GATNNNNATC 1 cut(s) 491
BseBI CCWGG 3 cut(s) 424, 512, 674
BseDI CCNNGG 1 cut(s) 672
BseGI GGATG 3 cut(s) 668, 847, 958
BseJI GATNNNNATC 1 cut(s) 491
BseMI GCAATG 1 cut(s) 297
BseMII CTCAG 3 cut(s) 56, 567, 701
BseNI ACTGG 3 cut(s) 205, 319, 772
BseXI GCAGC 3 cut(s) 16, 50, 602
BshFI GGCC 2 cut(s) 174, 219
BsiHKAI GWGCWC 1 cut(s) 628
BsiSI CCGG 3 cut(s) 175, 220, 342
BslFI GGGAC 4 cut(s) 254, 267, 660, 989
BsmFI GGGAC 4 cut(s) 254, 267, 660, 989
BsmI GAATGC 1 cut(s) 857
BsnI GGCC 2 cut(s) 174, 219
Bsp119I TTCGAA 1 cut(s) 867
Bsp1286I GDGCHC 1 cut(s) 628
Bsp143I GATC 2 cut(s) 283, 784
Bsp1720I GCTNAGC 1 cut(s) 42
BspACI CCGC 4 cut(s) 84, 383, 535, 891
BspANI GGCC 2 cut(s) 174, 219
BspCNI CTCAG 3 cut(s) 55, 566, 700
BspLI GGNNCC 2 cut(s) 340, 499
BspOI GCTAGC 1 cut(s) 38
BspPI GGATC 1 cut(s) 278
BspQI GCTCTTC 1 cut(s) 146
BspT104I TTCGAA 1 cut(s) 867
BsrDI GCAATG 1 cut(s) 297
BsrFI RCCGGY 1 cut(s) 341
BsrI ACTGG 3 cut(s) 205, 319, 772
BssAI RCCGGY 1 cut(s) 341
BssECI CCNNGG 1 cut(s) 672
BssMI GATC 2 cut(s) 283, 784
Bst2UI CCWGG 3 cut(s) 424, 512, 674
Bst4CI ACNGT 2 cut(s) 112, 145
Bst6I CTCTTC 3 cut(s) 146, 441, 753
BstAPI GCANNNNNTGC 3 cut(s) 272, 308, 362
BstBI TTCGAA 1 cut(s) 867
BstC8I GCNNGC 2 cut(s) 36, 958
BstDEI CTNAG 5 cut(s) 42, 346, 428, 553, 687
BstF5I GGATG 3 cut(s) 668, 847, 958
BstKTI GATC 2 cut(s) 286, 787
BstMBI GATC 2 cut(s) 283, 784
BstMWI GCNNNNNNNGC 4 cut(s) 272, 308, 362, 1013
BstNI CCWGG 3 cut(s) 424, 512, 674
BstNSI RCATGY 1 cut(s) 948
BstSCI CCNGG 4 cut(s) 174, 422, 510, 672
BstV1I GCAGC 3 cut(s) 16, 50, 602
BstV2I GAAGAC 2 cut(s) 760, 1004
BstX2I RGATCY 2 cut(s) 283, 784
BstXI CCANNNNNNTGG 1 cut(s) 170
BstYI RGATCY 2 cut(s) 283, 784
BsuI GTATCC 1 cut(s) 893
BsuRI GGCC 2 cut(s) 174, 219
BtsCI GGATG 3 cut(s) 668, 847, 958
BtsIMutI CAGTG 2 cut(s) 312, 561
Cac8I GCNNGC 2 cut(s) 36, 958
CaiI CAGNNNCTG 1 cut(s) 272
Cfr10I RCCGGY 1 cut(s) 341
Csp6I GTAC 2 cut(s) 550, 565
CviAII CATG 2 cut(s) 945, 1022
CviQI GTAC 2 cut(s) 550, 565
DdeI CTNAG 5 cut(s) 42, 346, 428, 553, 687
DpnI GATC 2 cut(s) 285, 786
DpnII GATC 2 cut(s) 283, 784
EaeI YGGCCR 2 cut(s) 172, 217
Eam1104I CTCTTC 3 cut(s) 146, 441, 753
EarI CTCTTC 3 cut(s) 146, 441, 753
Ecl136II GAGCTC 1 cut(s) 626
Eco24I GRGCYC 1 cut(s) 628
Eco53kI GAGCTC 1 cut(s) 626
Eco57I CTGAAG 4 cut(s) 170, 264, 315, 873
EcoICRI GAGCTC 1 cut(s) 626
EcoRII CCWGG 3 cut(s) 422, 510, 672
EcoT38I GRGCYC 1 cut(s) 628
FaeI CATG 2 cut(s) 948, 1025
FaqI GGGAC 4 cut(s) 254, 267, 660, 989
FatI CATG 2 cut(s) 944, 1021
FauI CCCGC 2 cut(s) 91, 542
FauNDI CATATG 2 cut(s) 169, 820
Fnu4HI GCNGC 4 cut(s) 5, 39, 383, 591
FokI GGATG 3 cut(s) 675, 834, 965
FriOI GRGCYC 1 cut(s) 628
Fsp4HI GCNGC 4 cut(s) 5, 39, 383, 591
FspBI CTAG 3 cut(s) 35, 281, 735
GluI GCNGC 4 cut(s) 5, 39, 383, 591
GsuI CTGGAG 1 cut(s) 533
HaeIII GGCC 2 cut(s) 174, 219
HapII CCGG 3 cut(s) 175, 220, 342
Hin1II CATG 2 cut(s) 948, 1025
HinfI GANTC 8 cut(s) 104, 116, 255, 473, 618, 648, 795, 977
HpaII CCGG 3 cut(s) 175, 220, 342
HphI GGTGA 4 cut(s) 64, 113, 455, 977
Hpy166II GTNNAC 1 cut(s) 559
Hpy188I TCNGA 9 cut(s) 150, 244, 497, 623, 630, 789, 835, 952, 1029
Hpy188III TCNNGA 6 cut(s) 259, 577, 601, 645, 751, 851
Hpy8I GTNNAC 1 cut(s) 559
HpyAV CCTTC 2 cut(s) 239, 385
HpyCH4III ACNGT 2 cut(s) 112, 145
HpyCH4IV ACGT 2 cut(s) 68, 873
HpyCH4V TGCA 6 cut(s) 4, 74, 227, 302, 356, 956
HpyF10VI GCNNNNNNNGC 4 cut(s) 272, 308, 362, 1013
HpyF3I CTNAG 5 cut(s) 42, 346, 428, 553, 687
HpySE526I ACGT 2 cut(s) 68, 873
Hsp92II CATG 2 cut(s) 948, 1025
Kzo9I GATC 2 cut(s) 283, 784
LguI GCTCTTC 1 cut(s) 146
LmnI GCTCC 1 cut(s) 623
Lsp1109I GCAGC 3 cut(s) 16, 50, 602
LweI GCATC 2 cut(s) 653, 943
MaeI CTAG 3 cut(s) 35, 281, 735
MaeII ACGT 2 cut(s) 68, 873
MaeIII GTNAC 3 cut(s) 101, 540, 601
MalI GATC 2 cut(s) 285, 786
MboI GATC 2 cut(s) 283, 784
MflI RGATCY 2 cut(s) 283, 784
MhlI GDGCHC 1 cut(s) 628
MluCI AATT 3 cut(s) 77, 157, 517
MlyI GAGTC 5 cut(s) 98, 249, 612, 642, 971
MnlI CCTC 1 cut(s) 370
MroXI GAANNNNTTC 2 cut(s) 767, 938
MslI CAYNNNNRTG 2 cut(s) 752, 943
MspA1I CMGCKG 2 cut(s) 335, 802
MspI CCGG 3 cut(s) 175, 220, 342
MspR9I CCNGG 4 cut(s) 176, 424, 512, 674
Mva1269I GAATGC 1 cut(s) 857
MvaI CCWGG 3 cut(s) 424, 512, 674
MwoI GCNNNNNNNGC 4 cut(s) 272, 308, 362, 1013
NciI CCSGG 1 cut(s) 176
NdeI CATATG 2 cut(s) 169, 820
NdeII GATC 2 cut(s) 283, 784
NheI GCTAGC 1 cut(s) 34
NlaIII CATG 2 cut(s) 948, 1025
NlaIV GGNNCC 2 cut(s) 340, 499
NmuCI GTSAC 2 cut(s) 101, 601
NspI RCATGY 1 cut(s) 948
NspV TTCGAA 1 cut(s) 867
PciI ACATGT 1 cut(s) 944
PciSI GCTCTTC 1 cut(s) 146
PcsI WCGNNNNNNNCGW 1 cut(s) 501
PctI GAATGC 1 cut(s) 857
PdmI GAANNNNTTC 2 cut(s) 767, 938
PfeI GAWTC 3 cut(s) 116, 473, 795
PfoI TCCNGGA 1 cut(s) 510
PkrI GCNGC 4 cut(s) 6, 40, 384, 592
PleI GAGTC 5 cut(s) 98, 249, 612, 642, 971
PpsI GAGTC 5 cut(s) 98, 249, 612, 642, 971
PscI ACATGT 1 cut(s) 944
Psp124BI GAGCTC 1 cut(s) 628
Psp6I CCWGG 3 cut(s) 422, 510, 672
PspGI CCWGG 3 cut(s) 422, 510, 672
PspN4I GGNNCC 2 cut(s) 340, 499
PstNI CAGNNNCTG 1 cut(s) 272
PsuI RGATCY 2 cut(s) 283, 784
PvuII CAGCTG 2 cut(s) 335, 802
RsaI GTAC 2 cut(s) 551, 566
RsaNI GTAC 2 cut(s) 550, 565
RseI CAYNNNNRTG 2 cut(s) 752, 943
SacI GAGCTC 1 cut(s) 628
SapI GCTCTTC 1 cut(s) 146
SatI GCNGC 4 cut(s) 5, 39, 383, 591
Sau3AI GATC 2 cut(s) 283, 784
ScaI AGTACT 1 cut(s) 551
SchI GAGTC 5 cut(s) 98, 249, 612, 642, 971
ScrFI CCNGG 4 cut(s) 176, 424, 512, 674
SduI GDGCHC 1 cut(s) 628
SfaNI GCATC 2 cut(s) 653, 943
SfuI TTCGAA 1 cut(s) 867
SmiMI CAYNNNNRTG 2 cut(s) 752, 943
SmlI CTYRAG 1 cut(s) 257
SmoI CTYRAG 1 cut(s) 257
Sse9I AATT 3 cut(s) 77, 157, 517
SsiI CCGC 4 cut(s) 84, 383, 535, 891
SspI AATATT 1 cut(s) 572
SspMI CTAG 3 cut(s) 35, 281, 735
SstI GAGCTC 1 cut(s) 628
StyD4I CCNGG 4 cut(s) 174, 422, 510, 672
TaaI ACNGT 2 cut(s) 112, 145
TaiI ACGT 2 cut(s) 71, 876
TaqI TCGA 1 cut(s) 867
TasI AATT 3 cut(s) 77, 157, 517
TatI WGTACW 1 cut(s) 549
TauI GCSGC 1 cut(s) 385
TfiI GAWTC 3 cut(s) 116, 473, 795
TscAI CASTG 2 cut(s) 319, 561
TseFI GTSAC 2 cut(s) 101, 601
TseI GCWGC 3 cut(s) 4, 38, 590
Tsp45I GTSAC 2 cut(s) 101, 601
TspDTI ATGAA 2 cut(s) 226, 947
TspGWI ACGGA 2 cut(s) 559, 807
TspRI CASTG 2 cut(s) 319, 561
XapI RAATTY 1 cut(s) 77
XceI RCATGY 1 cut(s) 948
XcmI CCANNNNNNNNNTGG 1 cut(s) 508
XmnI GAANNNNTTC 2 cut(s) 767, 938
XspI CTAG 3 cut(s) 35, 281, 735
ZrmI AGTACT 1 cut(s) 551
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.