Rh5DG291200

GDSL esterase lipase At4g26790-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0011664
Physical Location & Seq
Reverse (-)
36390627 .. 36394930
4304 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG291200.1

Sequence Viewer

Length: 897 bp
ATGAGGTCGGTTCAGCTGGGAATTAGGGTGTATGCAAGAGTTCCGGCAATCATTGTGTTTGGAGACTCTTCGGTTGATGCAGGAAACAATAACCAGGTATCAACAATCCTAAAGAGTGACTTTCCACCCTACGGTCGTGATTTCTATGGTGGACAGCCTACAGGGAGATTTTCCAATGGAACTGGTTATGATAATGCCACTTCTGATGTCCTATCTGTGATACCTCTTTGGAAGGAATTGGAGTACTACAAAGAATACCAGCAGGACCTCAGAATCTATCTAGGAAATGATGAAGCAAACGAGATTCTGGGAGAAGCACTTTACTTAATGAGTATAGGAACTAATGATTTCCTAGAAAACTACTATCTATTATCAAACAGATCATCGGAGTATTCCACAGAGGAGTACCAGAATTTTCTAGCAAAAATTGCTGGAAATTTTATCACAGAGCTCTTCCAGCTTGGAGCTCGAAAGATATCTCTAGGCGGCCTTCCTCCAATGGGTTGTCTGCCATTGGAGAGAACTAGAAATCTTCTTTTGGGGAGTGATTGTGTTGAGACGTACAATGATGTGGCTAGGAGTTTCAATAACAAGTTGGAGGAATTAGTTGACAGACTGAACGGGGAACTAGTTGGAATCCAGCTTGTGCTTGCAAACCCTTACTATATTCTCTCGGATATCATACAAAACCCTGAATCCTTTGGATTTGAAGAAGCAGCAACAGCTTGTTGTGGTACAGGATTGTTTGAGATGGGTTACATGTGTACAAAGATAAACCCATTTACGTGTTCAGATGCAAATCAATATGTATTTTGGGATGCCTTCCACCCCACAGAGAGAACAAATGGTATTGTTGCAGATCATATATTTAAAACTTGTCTAGCTCAATTTCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

298

Amino Acids

33.41

Weight (kDa)

4.51

Isoelectric Point (pI)

32.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 17 - 289 8.5e-25 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011664)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26790 AT4G26790
fragaria_vesca FvH4_3g23490 FvH4_3g23490 FvH4_3g23490
malus_domestica MD11G1210200.v1.1
prunus_persica Prupe.4G222900_v2.0.a1
pyrus_communis pycom11g18580
rosa_chinensis RchiOBHm_Chr5g0041341
rosa_laevigata RLG00000034054
rosa_multiflora Rmu_sc0000594.1_g000072
rosa_roxburghii Rroxscaffold_1G00039290
rosa_rugosa Rorug05G0191600 Rorug05G0191700
rosa_samantha Rh5AG277700 Rh5BG282400 Rh5CG314800 Rh5DG291200
rosa_wichuraiana Rw5G026140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 486
AcsI RAATTY 2 cut(s) 412, 436
AfaI GTAC 5 cut(s) 245, 407, 563, 736, 766
AfiI CCNNNNNNNGG 2 cut(s) 131, 500
AflIII ACRYGT 2 cut(s) 759, 785
AgsI TTSAA 2 cut(s) 586, 710
AhlI ACTAGT 1 cut(s) 628
AjnI CCWGG 1 cut(s) 93
AluBI AGCT 7 cut(s) 16, 451, 460, 467, 643, 725, 884
AluI AGCT 7 cut(s) 16, 451, 460, 467, 643, 725, 884
Alw21I GWGCWC 2 cut(s) 453, 469
Alw26I GTCTC 2 cut(s) 57, 551
AoxI GGCC 1 cut(s) 487
ApeKI GCWGC 1 cut(s) 716
ApoI RAATTY 2 cut(s) 412, 436
AspS9I GGNCC 1 cut(s) 265
AvaII GGWCC 1 cut(s) 265
BanII GRGCYC 2 cut(s) 453, 469
Bbv12I GWGCWC 2 cut(s) 453, 469
BbvI GCAGC 1 cut(s) 728
BccI CCATC 1 cut(s) 745
BciT130I CCWGG 1 cut(s) 95
BcoDI GTCTC 2 cut(s) 57, 551
BcuI ACTAGT 1 cut(s) 628
BfaI CTAG 8 cut(s) 281, 353, 419, 482, 525, 576, 629, 881
BfmI CTRYAG 1 cut(s) 159
BisI GCNGC 2 cut(s) 487, 717
BlsI GCNGC 2 cut(s) 488, 718
BmcAI AGTACT 1 cut(s) 245
Bme1390I CCNGG 1 cut(s) 95
Bme18I GGWCC 1 cut(s) 265
BmgT120I GGNCC 1 cut(s) 265
BmrFI CCNGG 1 cut(s) 95
BmsI GCATC 3 cut(s) 67, 784, 808
BsaAI YACGTR 1 cut(s) 786
BsaBI GATNNNNATC 1 cut(s) 798
BsaXI ACNNNNNCTCC 2 cut(s) 535, 565
Bsc4I CCNNNNNNNGG 2 cut(s) 131, 500
Bse1I ACTGG 1 cut(s) 187
Bse8I GATNNNNATC 1 cut(s) 798
BseBI CCWGG 1 cut(s) 95
BseGI GGATG 1 cut(s) 823
BseJI GATNNNNATC 1 cut(s) 798
BseLI CCNNNNNNNGG 2 cut(s) 131, 500
BseMII CTCAG 1 cut(s) 283
BseNI ACTGG 1 cut(s) 187
BseRI GAGGAG 1 cut(s) 416
BseXI GCAGC 1 cut(s) 728
BseYI CCCAGC 1 cut(s) 16
Bsh1285I CGRYCG 1 cut(s) 136
BshFI GGCC 1 cut(s) 489
BsiEI CGRYCG 1 cut(s) 136
BsiHKAI GWGCWC 2 cut(s) 453, 469
BsiSI CCGG 1 cut(s) 44
BslI CCNNNNNNNGG 2 cut(s) 131, 500
BsmAI GTCTC 2 cut(s) 57, 551
BsmBI CGTCTC 1 cut(s) 551
BsnI GGCC 1 cut(s) 489
Bsp1286I GDGCHC 2 cut(s) 453, 469
Bsp1407I TGTACA 1 cut(s) 764
Bsp143I GATC 2 cut(s) 380, 859
BspACI CCGC 1 cut(s) 486
BspANI GGCC 1 cut(s) 489
BspCNI CTCAG 1 cut(s) 282
BspQI GCTCTTC 1 cut(s) 458
BsrGI TGTACA 1 cut(s) 764
BsrI ACTGG 1 cut(s) 187
BssMI GATC 2 cut(s) 380, 859
Bst2UI CCWGG 1 cut(s) 95
Bst4CI ACNGT 1 cut(s) 134
Bst6I CTCTTC 2 cut(s) 73, 458
BstAPI GCANNNNNTGC 1 cut(s) 428
BstAUI TGTACA 1 cut(s) 764
BstBAI YACGTR 1 cut(s) 786
BstC8I GCNNGC 1 cut(s) 651
BstDEI CTNAG 1 cut(s) 269
BstF5I GGATG 1 cut(s) 823
BstKTI GATC 2 cut(s) 383, 862
BstMAI GTCTC 2 cut(s) 57, 551
BstMBI GATC 2 cut(s) 380, 859
BstMCI CGRYCG 1 cut(s) 136
BstMWI GCNNNNNNNGC 3 cut(s) 428, 457, 722
BstNI CCWGG 1 cut(s) 95
BstNSI RCATGY 1 cut(s) 763
BstSCI CCNGG 1 cut(s) 93
BstSFI CTRYAG 1 cut(s) 159
BstV1I GCAGC 1 cut(s) 728
BsuRI GGCC 1 cut(s) 489
BtsCI GGATG 1 cut(s) 823
Cac8I GCNNGC 1 cut(s) 651
Cfr13I GGNCC 1 cut(s) 265
CsiI ACCWGGT 1 cut(s) 93
Csp6I GTAC 5 cut(s) 244, 406, 562, 735, 765
CviAII CATG 1 cut(s) 760
CviQI GTAC 5 cut(s) 244, 406, 562, 735, 765
DdeI CTNAG 1 cut(s) 269
DpnI GATC 2 cut(s) 382, 861
DpnII GATC 2 cut(s) 380, 859
DraI TTTAAA 1 cut(s) 871
Eam1104I CTCTTC 2 cut(s) 73, 458
EarI CTCTTC 2 cut(s) 73, 458
Ecl136II GAGCTC 2 cut(s) 451, 467
Eco24I GRGCYC 2 cut(s) 453, 469
Eco32I GATATC 2 cut(s) 477, 679
Eco47I GGWCC 1 cut(s) 265
Eco53kI GAGCTC 2 cut(s) 451, 467
EcoICRI GAGCTC 2 cut(s) 451, 467
EcoO109I RGGNCCY 1 cut(s) 265
EcoRII CCWGG 1 cut(s) 93
EcoRV GATATC 2 cut(s) 477, 679
EcoT38I GRGCYC 2 cut(s) 453, 469
Esp3I CGTCTC 1 cut(s) 551
FaeI CATG 1 cut(s) 763
FalI AAGNNNNNCTT 2 cut(s) 104, 136
FatI CATG 1 cut(s) 759
Fnu4HI GCNGC 2 cut(s) 487, 717
FokI GGATG 1 cut(s) 830
FriOI GRGCYC 2 cut(s) 453, 469
Fsp4HI GCNGC 2 cut(s) 487, 717
FspBI CTAG 8 cut(s) 281, 353, 419, 482, 525, 576, 629, 881
GluI GCNGC 2 cut(s) 487, 717
GsaI CCCAGC 1 cut(s) 20
HaeIII GGCC 1 cut(s) 489
HapII CCGG 1 cut(s) 44
Hin1II CATG 1 cut(s) 763
HincII GTYRAC 1 cut(s) 610
HindII GTYRAC 1 cut(s) 610
HinfI GANTC 5 cut(s) 65, 273, 304, 636, 695
HpaII CCGG 1 cut(s) 44
Hpy166II GTNNAC 3 cut(s) 152, 610, 765
Hpy188I TCNGA 5 cut(s) 205, 272, 388, 676, 793
Hpy188III TCNNGA 1 cut(s) 137
Hpy8I GTNNAC 3 cut(s) 152, 610, 765
HpyAV CCTTC 3 cut(s) 226, 500, 832
HpyCH4III ACNGT 1 cut(s) 134
HpyCH4IV ACGT 2 cut(s) 560, 785
HpyCH4V TGCA 5 cut(s) 35, 80, 653, 797, 857
HpyF10VI GCNNNNNNNGC 3 cut(s) 428, 457, 722
HpyF3I CTNAG 1 cut(s) 269
HpySE526I ACGT 2 cut(s) 560, 785
Hsp92II CATG 1 cut(s) 763
Kzo9I GATC 2 cut(s) 380, 859
LguI GCTCTTC 1 cut(s) 458
LmnI GCTCC 1 cut(s) 464
Lsp1109I GCAGC 1 cut(s) 728
LweI GCATC 3 cut(s) 67, 784, 808
MabI ACCWGGT 1 cut(s) 93
MaeI CTAG 8 cut(s) 281, 353, 419, 482, 525, 576, 629, 881
MaeII ACGT 2 cut(s) 560, 785
MaeIII GTNAC 2 cut(s) 116, 755
MalI GATC 2 cut(s) 382, 861
MboI GATC 2 cut(s) 380, 859
MboII GAAGA 4 cut(s) 60, 445, 524, 722
MhlI GDGCHC 2 cut(s) 453, 469
MluCI AATT 7 cut(s) 21, 236, 412, 426, 436, 602, 887
MlyI GAGTC 1 cut(s) 59
MmeI TCCRAC 2 cut(s) 576, 613
MnlI CCTC 5 cut(s) 234, 278, 394, 504, 592
MseI TTAA 2 cut(s) 326, 870
MslI CAYNNNNRTG 1 cut(s) 784
MspA1I CMGCKG 1 cut(s) 16
MspI CCGG 1 cut(s) 44
MspR9I CCNGG 1 cut(s) 95
MvaI CCWGG 1 cut(s) 95
MwoI GCNNNNNNNGC 3 cut(s) 428, 457, 722
NdeII GATC 2 cut(s) 380, 859
NlaIII CATG 1 cut(s) 763
NmuCI GTSAC 1 cut(s) 116
NspI RCATGY 1 cut(s) 763
PciI ACATGT 1 cut(s) 759
PciSI GCTCTTC 1 cut(s) 458
PfeI GAWTC 4 cut(s) 273, 304, 636, 695
PkrI GCNGC 2 cut(s) 488, 718
PleI GAGTC 1 cut(s) 59
PpsI GAGTC 1 cut(s) 59
Ppu21I YACGTR 1 cut(s) 786
PpuMI RGGWCCY 1 cut(s) 265
PscI ACATGT 1 cut(s) 759
Psp124BI GAGCTC 2 cut(s) 453, 469
Psp5II RGGWCCY 1 cut(s) 265
Psp6I CCWGG 1 cut(s) 93
PspFI CCCAGC 1 cut(s) 16
PspGI CCWGG 1 cut(s) 93
PspPI GGNCC 1 cut(s) 265
PspPPI RGGWCCY 1 cut(s) 265
PvuII CAGCTG 1 cut(s) 16
RsaI GTAC 5 cut(s) 245, 407, 563, 736, 766
RsaNI GTAC 5 cut(s) 244, 406, 562, 735, 765
RseI CAYNNNNRTG 1 cut(s) 784
SacI GAGCTC 2 cut(s) 453, 469
SapI GCTCTTC 1 cut(s) 458
SaqAI TTAA 2 cut(s) 326, 870
SatI GCNGC 2 cut(s) 487, 717
Sau3AI GATC 2 cut(s) 380, 859
Sau96I GGNCC 1 cut(s) 265
ScaI AGTACT 1 cut(s) 245
SchI GAGTC 1 cut(s) 59
ScrFI CCNGG 1 cut(s) 95
SduI GDGCHC 2 cut(s) 453, 469
SexAI ACCWGGT 1 cut(s) 93
SfaNI GCATC 3 cut(s) 67, 784, 808
SfcI CTRYAG 1 cut(s) 159
SinI GGWCC 1 cut(s) 265
SmiMI CAYNNNNRTG 1 cut(s) 784
SpeI ACTAGT 1 cut(s) 628
Sse9I AATT 7 cut(s) 21, 236, 412, 426, 436, 602, 887
SsiI CCGC 1 cut(s) 486
SspMI CTAG 8 cut(s) 281, 353, 419, 482, 525, 576, 629, 881
SstI GAGCTC 2 cut(s) 453, 469
StyD4I CCNGG 1 cut(s) 93
TaaI ACNGT 1 cut(s) 134
TaiI ACGT 2 cut(s) 563, 788
TaqI TCGA 1 cut(s) 469
TasI AATT 7 cut(s) 21, 236, 412, 426, 436, 602, 887
TatI WGTACW 2 cut(s) 243, 764
TauI GCSGC 1 cut(s) 489
TfiI GAWTC 4 cut(s) 273, 304, 636, 695
Tru1I TTAA 2 cut(s) 326, 870
Tru9I TTAA 2 cut(s) 326, 870
TseFI GTSAC 1 cut(s) 116
TseI GCWGC 1 cut(s) 716
Tsp45I GTSAC 1 cut(s) 116
TspDTI ATGAA 1 cut(s) 306
VpaK11BI GGWCC 1 cut(s) 265
XapI RAATTY 2 cut(s) 412, 436
XceI RCATGY 1 cut(s) 763
XspI CTAG 8 cut(s) 281, 353, 419, 482, 525, 576, 629, 881
ZrmI AGTACT 1 cut(s) 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.