FvH4_3g23490

GDSL esterase lipase At4g26790-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0011664
Physical Location & Seq
Forward (+)
16553486 .. 16556672
3187 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g23490.t2

Sequence Viewer

Length: 1050 bp
ATGGCATTTAAGCCAATTTATTGGTTTCTCCTAATCCACTTCCTCCTGCAAATTTCTAGGGTGTACGCAAAAGTTCCAGCTATTATTGTGTTTGGAGACTCTTCTGTCGATGCAGGGAACAATAACCAGATATCGACAATCCTAAAGAGCAACTTTCCACCATACGGTCGTGATTTCTATGGTGGACAGCCTACAGGGCGATTTTCCAATGGTAGGATTCCACCAGACTTCATTTCTGAAGCTTTTGGGATCAAGCCAATGATACCTGCATACTTGGATCCATTTTATGACATTAAGGACTTCGCTACTGGAGTTTGCTTCGCCTCCGCAGGAACTGGTTACGATAATGCCACTTCTGATGTCCTATCTGTGTTACCTCTTTGGAAGGAATTGGAGTACTACAAACAATACCAGCAAGACCTCAGAACCTATCTAGGAGATGATGAAGCAAATGAGGTTCTGGGAGAAGCACTTTACTTAACGAGTATAGGAACTAATGATTTCCTAGAAAACTACTTTGTATTTTCAGAAAGATCAAAGGAGTATTCCATAGAGGAGTACCAGAATTTTCTTGCAAGTATTGCTCAAAATTTCATCACAGAGCTCTACCTGCTTGGAGCTCGAAAGATATCTCTAGGCGGCCTTCCTCCAATGGGTTGTCTGCCATTGGAGAGAACTAAAAATCTTCTTTCGGGGAGCGGTTGTATTGAGACATACAATGATGTGGCTAGGAGTTTCAATCACAAGTTGCAGGAAGTAGTTGACAAGTTCAACGAGCAACTAGTTGGAATCCAGCTTGTGCTTTCAAACCCATACTATATTCTCTCAGCTATCATACAAAACCCTCAATCCTTTCGATTTGAAACAGCAGCAACAGCCTGTTGTGGTACAGGATTGTTTGAAATGGGTTACATGTGTGCCAAGATAAACCCATTTACGTGTTCAGATGCAAATCAATATGTATTTTGGGATGCCTTCCACCCCACAGAGAGAACAAATGGTATTGTTGCAGATCATATATTTAAAACTTGTCTAGCTCAATTTCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

350

Amino Acids

39.28

Weight (kDa)

4.83

Isoelectric Point (pI)

31.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 28 - 260 6.1e-23 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011664)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26790 AT4G26790
fragaria_vesca FvH4_3g23490 FvH4_3g23490 FvH4_3g23490
malus_domestica MD11G1210200.v1.1
prunus_persica Prupe.4G222900_v2.0.a1
pyrus_communis pycom11g18580
rosa_chinensis RchiOBHm_Chr5g0041341
rosa_laevigata RLG00000034054
rosa_multiflora Rmu_sc0000594.1_g000072
rosa_roxburghii Rroxscaffold_1G00039290
rosa_rugosa Rorug05G0191600 Rorug05G0191700
rosa_samantha Rh5AG277700 Rh5BG282400 Rh5CG314800 Rh5DG291200
rosa_wichuraiana Rw5G026140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 104
Acc36I ACCTGC 2 cut(s) 274, 618
AccBSI CCGCTC 1 cut(s) 699
AciI CCGC 3 cut(s) 327, 639, 699
AclWI GGATC 3 cut(s) 257, 272, 285
AcsI RAATTY 3 cut(s) 51, 565, 589
AcuI CTGAAG 1 cut(s) 258
AfaI GTAC 4 cut(s) 65, 398, 560, 889
AfiI CCNNNNNNNGG 3 cut(s) 164, 213, 653
AflIII ACRYGT 2 cut(s) 912, 938
AgsI TTSAA 5 cut(s) 739, 772, 807, 863, 902
AhlI ACTAGT 1 cut(s) 781
AluBI AGCT 7 cut(s) 80, 242, 604, 620, 796, 830, 1037
AluI AGCT 7 cut(s) 80, 242, 604, 620, 796, 830, 1037
Alw21I GWGCWC 2 cut(s) 606, 622
Alw26I GTCTC 2 cut(s) 90, 704
AlwI GGATC 3 cut(s) 257, 272, 285
AlwNI CAGNNNCTG 1 cut(s) 335
AoxI GGCC 1 cut(s) 640
ApeKI GCWGC 1 cut(s) 869
ApoI RAATTY 3 cut(s) 51, 565, 589
BamHI GGATCC 1 cut(s) 277
BanII GRGCYC 2 cut(s) 606, 622
Bbv12I GWGCWC 2 cut(s) 606, 622
BbvI GCAGC 1 cut(s) 881
BcoDI GTCTC 2 cut(s) 90, 704
BcuI ACTAGT 1 cut(s) 781
BfaI CTAG 7 cut(s) 57, 434, 506, 635, 729, 782, 1034
BfmI CTRYAG 1 cut(s) 192
BfuAI ACCTGC 2 cut(s) 274, 618
BglI GCCNNNNNGGC 1 cut(s) 196
BisI GCNGC 2 cut(s) 640, 870
BlsI GCNGC 2 cut(s) 641, 871
BmcAI AGTACT 1 cut(s) 398
BmiI GGNNCC 1 cut(s) 279
BmsI GCATC 3 cut(s) 100, 937, 961
BpmI CTGGAG 1 cut(s) 330
BsaAI YACGTR 1 cut(s) 939
BsaBI GATNNNNATC 1 cut(s) 951
BsaXI ACNNNNNCTCC 2 cut(s) 688, 718
Bsc4I CCNNNNNNNGG 3 cut(s) 164, 213, 653
Bse1I ACTGG 2 cut(s) 313, 340
Bse8I GATNNNNATC 1 cut(s) 951
BseGI GGATG 1 cut(s) 976
BseJI GATNNNNATC 1 cut(s) 951
BseLI CCNNNNNNNGG 3 cut(s) 164, 213, 653
BseMII CTCAG 2 cut(s) 436, 840
BseNI ACTGG 2 cut(s) 313, 340
BseRI GAGGAG 1 cut(s) 569
BseXI GCAGC 1 cut(s) 881
Bsh1285I CGRYCG 1 cut(s) 169
BshFI GGCC 1 cut(s) 642
BsiEI CGRYCG 1 cut(s) 169
BsiHKAI GWGCWC 2 cut(s) 606, 622
BslI CCNNNNNNNGG 3 cut(s) 164, 213, 653
BsmAI GTCTC 2 cut(s) 90, 704
BsnI GGCC 1 cut(s) 642
Bsp1286I GDGCHC 2 cut(s) 606, 622
Bsp143I GATC 4 cut(s) 249, 277, 533, 1012
BspACI CCGC 3 cut(s) 327, 639, 699
BspANI GGCC 1 cut(s) 642
BspCNI CTCAG 2 cut(s) 435, 839
BspLI GGNNCC 1 cut(s) 279
BspMI ACCTGC 2 cut(s) 274, 618
BspPI GGATC 3 cut(s) 257, 272, 285
BsrBI CCGCTC 1 cut(s) 699
BsrI ACTGG 2 cut(s) 313, 340
BssMI GATC 4 cut(s) 249, 277, 533, 1012
Bst4CI ACNGT 1 cut(s) 167
Bst6I CTCTTC 1 cut(s) 106
BstAPI GCANNNNNTGC 1 cut(s) 581
BstBAI YACGTR 1 cut(s) 939
BstDEI CTNAG 2 cut(s) 422, 826
BstF5I GGATG 1 cut(s) 976
BstKTI GATC 4 cut(s) 252, 280, 536, 1015
BstMAI GTCTC 2 cut(s) 90, 704
BstMBI GATC 4 cut(s) 249, 277, 533, 1012
BstMCI CGRYCG 1 cut(s) 169
BstMWI GCNNNNNNNGC 4 cut(s) 196, 581, 610, 875
BstNSI RCATGY 1 cut(s) 916
BstSFI CTRYAG 1 cut(s) 192
BstV1I GCAGC 1 cut(s) 881
BstX2I RGATCY 1 cut(s) 277
BstXI CCANNNNNNTGG 1 cut(s) 21
BstYI RGATCY 1 cut(s) 277
BsuRI GGCC 1 cut(s) 642
BtsCI GGATG 1 cut(s) 976
BveI ACCTGC 2 cut(s) 274, 618
CaiI CAGNNNCTG 1 cut(s) 335
Csp6I GTAC 4 cut(s) 64, 397, 559, 888
CviAII CATG 1 cut(s) 913
CviQI GTAC 4 cut(s) 64, 397, 559, 888
DdeI CTNAG 2 cut(s) 422, 826
DpnI GATC 4 cut(s) 251, 279, 535, 1014
DpnII GATC 4 cut(s) 249, 277, 533, 1012
DraI TTTAAA 1 cut(s) 1024
DrdI GACNNNNNNGTC 1 cut(s) 104
DseDI GACNNNNNNGTC 1 cut(s) 104
Eam1104I CTCTTC 1 cut(s) 106
EarI CTCTTC 1 cut(s) 106
Ecl136II GAGCTC 2 cut(s) 604, 620
Eco24I GRGCYC 2 cut(s) 606, 622
Eco32I GATATC 2 cut(s) 132, 630
Eco53kI GAGCTC 2 cut(s) 604, 620
Eco57I CTGAAG 1 cut(s) 258
EcoICRI GAGCTC 2 cut(s) 604, 620
EcoRV GATATC 2 cut(s) 132, 630
EcoT38I GRGCYC 2 cut(s) 606, 622
FaeI CATG 1 cut(s) 916
FalI AAGNNNNNCTT 2 cut(s) 137, 169
FatI CATG 1 cut(s) 912
Fnu4HI GCNGC 2 cut(s) 640, 870
FokI GGATG 1 cut(s) 983
FriOI GRGCYC 2 cut(s) 606, 622
Fsp4HI GCNGC 2 cut(s) 640, 870
FspBI CTAG 7 cut(s) 57, 434, 506, 635, 729, 782, 1034
GluI GCNGC 2 cut(s) 640, 870
GsuI CTGGAG 1 cut(s) 330
HaeIII GGCC 1 cut(s) 642
Hin1II CATG 1 cut(s) 916
HincII GTYRAC 1 cut(s) 763
HindII GTYRAC 1 cut(s) 763
HindIII AAGCTT 1 cut(s) 240
HinfI GANTC 3 cut(s) 98, 217, 789
Hpy166II GTNNAC 3 cut(s) 64, 185, 763
Hpy188I TCNGA 5 cut(s) 238, 358, 425, 529, 946
Hpy188III TCNNGA 1 cut(s) 170
Hpy8I GTNNAC 3 cut(s) 64, 185, 763
HpyAV CCTTC 3 cut(s) 379, 653, 985
HpyCH4III ACNGT 1 cut(s) 167
HpyCH4IV ACGT 1 cut(s) 938
HpyCH4V TGCA 7 cut(s) 49, 113, 269, 575, 751, 950, 1010
HpyF10VI GCNNNNNNNGC 4 cut(s) 196, 581, 610, 875
HpyF3I CTNAG 2 cut(s) 422, 826
HpySE526I ACGT 1 cut(s) 938
Hsp92II CATG 1 cut(s) 916
Kzo9I GATC 4 cut(s) 249, 277, 533, 1012
LmnI GCTCC 2 cut(s) 617, 696
Lsp1109I GCAGC 1 cut(s) 881
LweI GCATC 3 cut(s) 100, 937, 961
MaeI CTAG 7 cut(s) 57, 434, 506, 635, 729, 782, 1034
MaeII ACGT 1 cut(s) 938
MaeIII GTNAC 3 cut(s) 338, 372, 908
MalI GATC 4 cut(s) 251, 279, 535, 1014
MbiI CCGCTC 1 cut(s) 699
MboI GATC 4 cut(s) 249, 277, 533, 1012
MboII GAAGA 2 cut(s) 93, 677
MflI RGATCY 1 cut(s) 277
MhlI GDGCHC 2 cut(s) 606, 622
MluCI AATT 6 cut(s) 15, 51, 389, 565, 589, 1040
MlyI GAGTC 1 cut(s) 92
MmeI TCCRAC 1 cut(s) 766
MnlI CCTC 8 cut(s) 53, 334, 387, 431, 448, 547, 657, 855
MseI TTAA 4 cut(s) 9, 294, 479, 1023
MslI CAYNNNNRTG 1 cut(s) 937
MwoI GCNNNNNNNGC 4 cut(s) 196, 581, 610, 875
NdeII GATC 4 cut(s) 249, 277, 533, 1012
NlaIII CATG 1 cut(s) 916
NlaIV GGNNCC 1 cut(s) 279
NspI RCATGY 1 cut(s) 916
PciI ACATGT 1 cut(s) 912
PfeI GAWTC 2 cut(s) 217, 789
PkrI GCNGC 2 cut(s) 641, 871
PleI GAGTC 1 cut(s) 92
PpsI GAGTC 1 cut(s) 92
Ppu21I YACGTR 1 cut(s) 939
PscI ACATGT 1 cut(s) 912
Psp124BI GAGCTC 2 cut(s) 606, 622
PspN4I GGNNCC 1 cut(s) 279
PstNI CAGNNNCTG 1 cut(s) 335
PsuI RGATCY 1 cut(s) 277
RsaI GTAC 4 cut(s) 65, 398, 560, 889
RsaNI GTAC 4 cut(s) 64, 397, 559, 888
RseI CAYNNNNRTG 1 cut(s) 937
SacI GAGCTC 2 cut(s) 606, 622
SaqAI TTAA 4 cut(s) 9, 294, 479, 1023
SatI GCNGC 2 cut(s) 640, 870
Sau3AI GATC 4 cut(s) 249, 277, 533, 1012
ScaI AGTACT 1 cut(s) 398
SchI GAGTC 1 cut(s) 92
SduI GDGCHC 2 cut(s) 606, 622
SfaNI GCATC 3 cut(s) 100, 937, 961
SfcI CTRYAG 1 cut(s) 192
SmiMI CAYNNNNRTG 1 cut(s) 937
SpeI ACTAGT 1 cut(s) 781
Sse9I AATT 6 cut(s) 15, 51, 389, 565, 589, 1040
SsiI CCGC 3 cut(s) 327, 639, 699
SspMI CTAG 7 cut(s) 57, 434, 506, 635, 729, 782, 1034
SstI GAGCTC 2 cut(s) 606, 622
TaaI ACNGT 1 cut(s) 167
TaiI ACGT 1 cut(s) 941
TaqI TCGA 4 cut(s) 108, 134, 622, 856
TasI AATT 6 cut(s) 15, 51, 389, 565, 589, 1040
TatI WGTACW 1 cut(s) 396
TauI GCSGC 1 cut(s) 642
TfiI GAWTC 2 cut(s) 217, 789
Tru1I TTAA 4 cut(s) 9, 294, 479, 1023
Tru9I TTAA 4 cut(s) 9, 294, 479, 1023
TseI GCWGC 1 cut(s) 869
TspDTI ATGAA 3 cut(s) 220, 459, 583
XapI RAATTY 3 cut(s) 51, 565, 589
XceI RCATGY 1 cut(s) 916
XspI CTAG 7 cut(s) 57, 434, 506, 635, 729, 782, 1034
ZrmI AGTACT 1 cut(s) 398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.