Rh5AG277700

GDSL esterase lipase At4g26790-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0011664
Physical Location & Seq
Reverse (-)
37340874 .. 37344413
3540 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG277700.1

Sequence Viewer

Length: 570 bp
ATGAGTATAGGAACTAATGATTTCCTAGAAAACTACTATATATTATCAAACAGATCATCGGAGTATTCCACAGAGGAGTACCAGAATTTTCTAGCAAAAATTGCTGGAAATTTTATCACAGAGCTCTTCCAGCTTGGAGCTCGAAAGATATCTCTAGGCGGCCTTCCTCCAATGGGTTGTCTGCCATTGGAGAGAACTAGAAATCTTCTTTTGGGGAGTGATTGTGTTGAGACGTACAATGATGTGGCTAGGAGTTTCAATAACAAGTTGGAGGAATTAGTTGACAGACTGAACGGGGAACTAGTTGGAATCCAGCTTGTGCTTGCAAACCCATACTATATTCTCTCGGATATCATACAAAACCCTGAATCCTTTGGATTTGAAGAAGCAGCAACAGCTTGTTGTGGTACAGGATTGTTTGAGATGGGTTACATGTGTACAAAGATAAACCCATTTACGTGTTCAGATGCAAATCAATATGTATTTTGGGATGCCTTCCACCCCACAGAGAGAACAAATGGTATTGTTGCAGATCATGTATTTAAAACTTGTCTAGCTCAATTTCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

189

Amino Acids

21.21

Weight (kDa)

4.52

Isoelectric Point (pI)

30.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 2 - 180 3.1e-20 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011664)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26790 AT4G26790
fragaria_vesca FvH4_3g23490 FvH4_3g23490 FvH4_3g23490
malus_domestica MD11G1210200.v1.1
prunus_persica Prupe.4G222900_v2.0.a1
pyrus_communis pycom11g18580
rosa_chinensis RchiOBHm_Chr5g0041341
rosa_laevigata RLG00000034054
rosa_multiflora Rmu_sc0000594.1_g000072
rosa_roxburghii Rroxscaffold_1G00039290
rosa_rugosa Rorug05G0191600 Rorug05G0191700
rosa_samantha Rh5AG277700 Rh5BG282400 Rh5CG314800 Rh5DG291200
rosa_wichuraiana Rw5G026140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 159
AcsI RAATTY 2 cut(s) 85, 109
AfaI GTAC 4 cut(s) 80, 236, 409, 439
AfiI CCNNNNNNNGG 1 cut(s) 173
AflIII ACRYGT 2 cut(s) 432, 458
AgsI TTSAA 2 cut(s) 259, 383
AhlI ACTAGT 1 cut(s) 301
AluBI AGCT 6 cut(s) 124, 133, 140, 316, 398, 557
AluI AGCT 6 cut(s) 124, 133, 140, 316, 398, 557
Alw21I GWGCWC 2 cut(s) 126, 142
Alw26I GTCTC 1 cut(s) 224
AoxI GGCC 1 cut(s) 160
ApeKI GCWGC 1 cut(s) 389
ApoI RAATTY 2 cut(s) 85, 109
BanII GRGCYC 2 cut(s) 126, 142
Bbv12I GWGCWC 2 cut(s) 126, 142
BbvI GCAGC 1 cut(s) 401
BccI CCATC 1 cut(s) 418
BcoDI GTCTC 1 cut(s) 224
BcuI ACTAGT 1 cut(s) 301
BfaI CTAG 7 cut(s) 26, 92, 155, 198, 249, 302, 554
BisI GCNGC 2 cut(s) 160, 390
BlsI GCNGC 2 cut(s) 161, 391
BmsI GCATC 2 cut(s) 457, 481
BsaAI YACGTR 1 cut(s) 459
BsaBI GATNNNNATC 1 cut(s) 471
BsaXI ACNNNNNCTCC 2 cut(s) 208, 238
Bsc4I CCNNNNNNNGG 1 cut(s) 173
Bse8I GATNNNNATC 1 cut(s) 471
BseGI GGATG 1 cut(s) 496
BseJI GATNNNNATC 1 cut(s) 471
BseLI CCNNNNNNNGG 1 cut(s) 173
BseRI GAGGAG 1 cut(s) 89
BseXI GCAGC 1 cut(s) 401
BshFI GGCC 1 cut(s) 162
BsiHKAI GWGCWC 2 cut(s) 126, 142
BslI CCNNNNNNNGG 1 cut(s) 173
BsmAI GTCTC 1 cut(s) 224
BsmBI CGTCTC 1 cut(s) 224
BsnI GGCC 1 cut(s) 162
Bsp1286I GDGCHC 2 cut(s) 126, 142
Bsp1407I TGTACA 1 cut(s) 437
Bsp143I GATC 2 cut(s) 53, 532
BspACI CCGC 1 cut(s) 159
BspANI GGCC 1 cut(s) 162
BspQI GCTCTTC 1 cut(s) 131
BsrGI TGTACA 1 cut(s) 437
BssMI GATC 2 cut(s) 53, 532
Bst6I CTCTTC 1 cut(s) 131
BstAPI GCANNNNNTGC 1 cut(s) 101
BstAUI TGTACA 1 cut(s) 437
BstBAI YACGTR 1 cut(s) 459
BstC8I GCNNGC 1 cut(s) 324
BstF5I GGATG 1 cut(s) 496
BstKTI GATC 2 cut(s) 56, 535
BstMAI GTCTC 1 cut(s) 224
BstMBI GATC 2 cut(s) 53, 532
BstMWI GCNNNNNNNGC 3 cut(s) 101, 130, 395
BstNSI RCATGY 1 cut(s) 436
BstV1I GCAGC 1 cut(s) 401
BsuRI GGCC 1 cut(s) 162
BtsCI GGATG 1 cut(s) 496
Cac8I GCNNGC 1 cut(s) 324
Csp6I GTAC 4 cut(s) 79, 235, 408, 438
CviAII CATG 2 cut(s) 433, 536
CviJI RGCY 8 cut(s) 124, 133, 140, 162, 248, 316, 398, 557
CviKI_1 RGCY 8 cut(s) 124, 133, 140, 162, 248, 316, 398, 557
CviQI GTAC 4 cut(s) 79, 235, 408, 438
DpnI GATC 2 cut(s) 55, 534
DpnII GATC 2 cut(s) 53, 532
DraI TTTAAA 1 cut(s) 544
Eam1104I CTCTTC 1 cut(s) 131
EarI CTCTTC 1 cut(s) 131
Ecl136II GAGCTC 2 cut(s) 124, 140
Eco24I GRGCYC 2 cut(s) 126, 142
Eco32I GATATC 2 cut(s) 150, 352
Eco53kI GAGCTC 2 cut(s) 124, 140
EcoICRI GAGCTC 2 cut(s) 124, 140
EcoRV GATATC 2 cut(s) 150, 352
EcoT38I GRGCYC 2 cut(s) 126, 142
Esp3I CGTCTC 1 cut(s) 224
FaeI CATG 2 cut(s) 436, 539
FatI CATG 2 cut(s) 432, 535
Fnu4HI GCNGC 2 cut(s) 160, 390
FokI GGATG 1 cut(s) 503
FriOI GRGCYC 2 cut(s) 126, 142
Fsp4HI GCNGC 2 cut(s) 160, 390
FspBI CTAG 7 cut(s) 26, 92, 155, 198, 249, 302, 554
GluI GCNGC 2 cut(s) 160, 390
HaeIII GGCC 1 cut(s) 162
Hin1II CATG 2 cut(s) 436, 539
HincII GTYRAC 1 cut(s) 283
HindII GTYRAC 1 cut(s) 283
HinfI GANTC 2 cut(s) 309, 368
Hpy166II GTNNAC 2 cut(s) 283, 438
Hpy188I TCNGA 3 cut(s) 61, 349, 466
Hpy8I GTNNAC 2 cut(s) 283, 438
HpyAV CCTTC 2 cut(s) 173, 505
HpyCH4IV ACGT 2 cut(s) 233, 458
HpyCH4V TGCA 3 cut(s) 326, 470, 530
HpyF10VI GCNNNNNNNGC 3 cut(s) 101, 130, 395
HpySE526I ACGT 2 cut(s) 233, 458
Hsp92II CATG 2 cut(s) 436, 539
Kzo9I GATC 2 cut(s) 53, 532
LguI GCTCTTC 1 cut(s) 131
LmnI GCTCC 1 cut(s) 137
LpnPI CCDG 6 cut(s) 90, 95, 143, 326, 378, 396
Lsp1109I GCAGC 1 cut(s) 401
LweI GCATC 2 cut(s) 457, 481
MaeI CTAG 7 cut(s) 26, 92, 155, 198, 249, 302, 554
MaeII ACGT 2 cut(s) 233, 458
MaeIII GTNAC 1 cut(s) 428
MalI GATC 2 cut(s) 55, 534
MboI GATC 2 cut(s) 53, 532
MboII GAAGA 3 cut(s) 118, 197, 395
MhlI GDGCHC 2 cut(s) 126, 142
MluCI AATT 5 cut(s) 85, 99, 109, 275, 560
MmeI TCCRAC 2 cut(s) 249, 286
MnlI CCTC 3 cut(s) 67, 177, 265
MseI TTAA 1 cut(s) 543
MslI CAYNNNNRTG 1 cut(s) 457
MwoI GCNNNNNNNGC 3 cut(s) 101, 130, 395
NdeII GATC 2 cut(s) 53, 532
NlaIII CATG 2 cut(s) 436, 539
NspI RCATGY 1 cut(s) 436
PciI ACATGT 1 cut(s) 432
PciSI GCTCTTC 1 cut(s) 131
PfeI GAWTC 2 cut(s) 309, 368
PkrI GCNGC 2 cut(s) 161, 391
Ppu21I YACGTR 1 cut(s) 459
PscI ACATGT 1 cut(s) 432
Psp124BI GAGCTC 2 cut(s) 126, 142
RsaI GTAC 4 cut(s) 80, 236, 409, 439
RsaNI GTAC 4 cut(s) 79, 235, 408, 438
RseI CAYNNNNRTG 1 cut(s) 457
SacI GAGCTC 2 cut(s) 126, 142
SapI GCTCTTC 1 cut(s) 131
SaqAI TTAA 1 cut(s) 543
SatI GCNGC 2 cut(s) 160, 390
Sau3AI GATC 2 cut(s) 53, 532
SduI GDGCHC 2 cut(s) 126, 142
SetI ASST 8 cut(s) 126, 135, 142, 236, 318, 400, 461, 559
SfaNI GCATC 2 cut(s) 457, 481
SmiMI CAYNNNNRTG 1 cut(s) 457
SpeI ACTAGT 1 cut(s) 301
Sse9I AATT 5 cut(s) 85, 99, 109, 275, 560
SsiI CCGC 1 cut(s) 159
SspMI CTAG 7 cut(s) 26, 92, 155, 198, 249, 302, 554
SstI GAGCTC 2 cut(s) 126, 142
TaiI ACGT 2 cut(s) 236, 461
TaqI TCGA 1 cut(s) 142
TasI AATT 5 cut(s) 85, 99, 109, 275, 560
TatI WGTACW 1 cut(s) 437
TauI GCSGC 1 cut(s) 162
TfiI GAWTC 2 cut(s) 309, 368
Tru1I TTAA 1 cut(s) 543
Tru9I TTAA 1 cut(s) 543
TseI GCWGC 1 cut(s) 389
XapI RAATTY 2 cut(s) 85, 109
XceI RCATGY 1 cut(s) 436
XspI CTAG 7 cut(s) 26, 92, 155, 198, 249, 302, 554
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.