Prupe.4G222900_v2.0.a1

GDSL esterase lipase At4g26790-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0011664
Physical Location & Seq
Reverse (-)
13997208 .. 13999176
1969 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G222900.1

Sequence Viewer

Length: 1050 bp
ATGACAATTAAGGCCATTCAACGGTTCCTCCTAACCTATCTCCTTCTGGAAATCTCTATGGTGTCTGCAAAAGTTCCGGCAGTTATTGTGTTTGGAGACTCTACTGTGGATGCAGGGAACAACAACCAGATATCAACAGTCCTGAAGAGCGACTTTCAACCCTATGGTCACGATTTCTTTGGAGGCCAGCCTACCGGGCGCTTTTCCAATGGTAGGGTTCCAACAGACTTCATTTCTGAAGCTTTTATGATCAAGCCAACGATACCTGCATACTTGGATCCAACTTATACCATTAAGGATTTTGCTACTGGAGTTTGCTTTGCCTCTGCGGGAACTGGTTATGATAATGCCACTTCTGATGTGCTATCTGTAATACCTCTTTGGAAGGAATTGGAGTACTACAAGAAATACCAGAAGGACCTGAGAAGCTATCTAGGCAATGCTAAAGCTAATGAGGTTCTGGGAGAAGCACTTTACCTGATCAGTATAGGAACTAATGATTTCGTAGAAAACTACTACGTAATTAAACGCAGATCATCACAGTTTTCCATAGAGGAGTACCAAAATTTTCTAGCCGGAATTGCTGGAAATTTCATCACAGAGCTTTACCAGCTTGGAGCTCGAAAGATATCTATAAGCGGCCTTCCCCCGATGGGTTGCCTGCCACTGGAGAGAACTACAAATATCTTGTCTGGGAGTGATTGTATTGAGGAGTACAATGATGTGGCTAGGATTTTCAATGTGAAGTTGCAGAGACTGATTGAAAAGCTCAGCAAGAAACTAGTTAGAATCCAACTTGTGCTTTCAAACCCATATGATATTCTCTTAGAAATCATTCAAAACCCAGCTACTTTTGGATTTGAAGATGCAGCAACAGCCTGTTGTGGCACAGGATTATTTGAGATGAGTTACATGTGCAATAAGATAACCCCATTCACATGTTCAGATGCAAATAAATATGTATTTTGGGACTCCTTCCATCCCACAGAAAAAACAAATGCTATTATTGCAGATCATGTATTCAGAAATTGCCTAGCTCAATTTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

350

Amino Acids

39.04

Weight (kDa)

5.39

Isoelectric Point (pI)

33.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011664)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26790 AT4G26790
fragaria_vesca FvH4_3g23490 FvH4_3g23490 FvH4_3g23490
malus_domestica MD11G1210200.v1.1
prunus_persica Prupe.4G222900_v2.0.a1
pyrus_communis pycom11g18580
rosa_chinensis RchiOBHm_Chr5g0041341
rosa_laevigata RLG00000034054
rosa_multiflora Rmu_sc0000594.1_g000072
rosa_roxburghii Rroxscaffold_1G00039290
rosa_rugosa Rorug05G0191600 Rorug05G0191700
rosa_samantha Rh5AG277700 Rh5BG282400 Rh5CG314800 Rh5DG291200
rosa_wichuraiana Rw5G026140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 274
AciI CCGC 2 cut(s) 329, 639
AclWI GGATC 2 cut(s) 272, 285
AcsI RAATTY 2 cut(s) 565, 589
AcuI CTGAAG 2 cut(s) 164, 258
AfaI GTAC 3 cut(s) 398, 560, 716
AfiI CCNNNNNNNGG 4 cut(s) 21, 213, 653, 667
AflIII ACRYGT 2 cut(s) 912, 938
AgsI TTSAA 7 cut(s) 20, 158, 739, 764, 807, 839, 863
AhlI ACTAGT 1 cut(s) 781
AluBI AGCT 9 cut(s) 242, 429, 449, 604, 613, 620, 769, 848, 1037
AluI AGCT 9 cut(s) 242, 429, 449, 604, 613, 620, 769, 848, 1037
Alw21I GWGCWC 1 cut(s) 622
Alw26I GTCTC 2 cut(s) 90, 748
AlwI GGATC 2 cut(s) 272, 285
AlwNI CAGNNNCTG 1 cut(s) 757
AoxI GGCC 3 cut(s) 12, 184, 640
ApeKI GCWGC 1 cut(s) 869
ApoI RAATTY 2 cut(s) 565, 589
ArsI GACNNNNNNTTYG 2 cut(s) 674, 706
Asp700I GAANNNNTTC 1 cut(s) 834
AspLEI GCGC 1 cut(s) 201
AspS9I GGNCC 1 cut(s) 418
AsuC2I CCSGG 1 cut(s) 196
AvaII GGWCC 1 cut(s) 418
BamHI GGATCC 1 cut(s) 277
BanII GRGCYC 1 cut(s) 622
Bbv12I GWGCWC 1 cut(s) 622
BbvI GCAGC 1 cut(s) 881
BccI CCATC 2 cut(s) 646, 987
BclI TGATCA 2 cut(s) 249, 480
BcnI CCSGG 1 cut(s) 196
BcoDI GTCTC 2 cut(s) 90, 748
BcuI ACTAGT 1 cut(s) 781
BfaI CTAG 5 cut(s) 434, 572, 729, 782, 1034
BfoI RGCGCY 1 cut(s) 202
BfuAI ACCTGC 1 cut(s) 274
BglI GCCNNNNNGGC 1 cut(s) 196
BisI GCNGC 2 cut(s) 640, 870
BlpI GCTNAGC 1 cut(s) 770
BlsI GCNGC 2 cut(s) 641, 871
BmcAI AGTACT 1 cut(s) 398
Bme1390I CCNGG 1 cut(s) 196
Bme18I GGWCC 1 cut(s) 418
BmgT120I GGNCC 1 cut(s) 418
BmiI GGNNCC 3 cut(s) 26, 219, 279
BmrFI CCNGG 1 cut(s) 196
BmsI GCATC 3 cut(s) 100, 856, 937
BpmI CTGGAG 2 cut(s) 330, 689
Bpu1102I GCTNAGC 1 cut(s) 770
BpuMI CCSGG 1 cut(s) 196
BsaAI YACGTR 1 cut(s) 520
BsaXI ACNNNNNCTCC 4 cut(s) 12, 42, 688, 718
Bsc4I CCNNNNNNNGG 4 cut(s) 21, 213, 653, 667
Bse1I ACTGG 3 cut(s) 313, 340, 672
Bse3DI GCAATG 1 cut(s) 445
BseGI GGATG 2 cut(s) 115, 979
BseLI CCNNNNNNNGG 4 cut(s) 21, 213, 653, 667
BseMI GCAATG 1 cut(s) 445
BseMII CTCAG 2 cut(s) 413, 784
BseNI ACTGG 3 cut(s) 313, 340, 672
BseRI GAGGAG 2 cut(s) 569, 725
BseXI GCAGC 1 cut(s) 881
BseYI CCCAGC 1 cut(s) 844
BshFI GGCC 3 cut(s) 14, 186, 642
BsiHKAI GWGCWC 1 cut(s) 622
BsiSI CCGG 3 cut(s) 77, 195, 576
BslFI GGGAC 1 cut(s) 983
BslI CCNNNNNNNGG 4 cut(s) 21, 213, 653, 667
BsmAI GTCTC 2 cut(s) 90, 748
BsmFI GGGAC 1 cut(s) 983
BsnI GGCC 3 cut(s) 14, 186, 642
Bsp1286I GDGCHC 1 cut(s) 622
Bsp143I GATC 5 cut(s) 249, 277, 480, 533, 1012
Bsp1720I GCTNAGC 1 cut(s) 770
BspACI CCGC 2 cut(s) 329, 639
BspANI GGCC 3 cut(s) 14, 186, 642
BspCNI CTCAG 2 cut(s) 414, 783
BspHI TCATGA 1 cut(s) 1046
BspLI GGNNCC 3 cut(s) 26, 219, 279
BspMI ACCTGC 1 cut(s) 274
BspPI GGATC 2 cut(s) 272, 285
BspQI GCTCTTC 1 cut(s) 140
BsrDI GCAATG 1 cut(s) 445
BsrI ACTGG 3 cut(s) 313, 340, 672
BssMI GATC 5 cut(s) 249, 277, 480, 533, 1012
Bst4CI ACNGT 4 cut(s) 24, 106, 139, 543
Bst6I CTCTTC 1 cut(s) 140
BstBAI YACGTR 1 cut(s) 520
BstC8I GCNNGC 2 cut(s) 188, 662
BstDEI CTNAG 3 cut(s) 422, 770, 826
BstF5I GGATG 2 cut(s) 115, 979
BstH2I RGCGCY 1 cut(s) 202
BstHHI GCGC 1 cut(s) 201
BstKTI GATC 5 cut(s) 252, 280, 483, 536, 1015
BstMAI GTCTC 2 cut(s) 90, 748
BstMBI GATC 5 cut(s) 249, 277, 480, 533, 1012
BstMWI GCNNNNNNNGC 6 cut(s) 196, 435, 581, 610, 875, 1007
BstNSI RCATGY 2 cut(s) 916, 942
BstSCI CCNGG 1 cut(s) 194
BstSNI TACGTA 1 cut(s) 520
BstV1I GCAGC 1 cut(s) 881
BstX2I RGATCY 1 cut(s) 277
BstYI RGATCY 1 cut(s) 277
BsuRI GGCC 3 cut(s) 14, 186, 642
BtsCI GGATG 2 cut(s) 115, 979
BtsIMutI CAGTG 1 cut(s) 665
BveI ACCTGC 1 cut(s) 274
Cac8I GCNNGC 2 cut(s) 188, 662
CaiI CAGNNNCTG 1 cut(s) 757
CciI TCATGA 1 cut(s) 1046
CfoI GCGC 1 cut(s) 201
Cfr13I GGNCC 1 cut(s) 418
Csp6I GTAC 3 cut(s) 397, 559, 715
CviAII CATG 4 cut(s) 913, 939, 1016, 1047
CviQI GTAC 3 cut(s) 397, 559, 715
DdeI CTNAG 3 cut(s) 422, 770, 826
DpnI GATC 5 cut(s) 251, 279, 482, 535, 1014
DpnII GATC 5 cut(s) 249, 277, 480, 533, 1012
Eam1104I CTCTTC 1 cut(s) 140
EarI CTCTTC 1 cut(s) 140
Ecl136II GAGCTC 1 cut(s) 620
Eco105I TACGTA 1 cut(s) 520
Eco24I GRGCYC 1 cut(s) 622
Eco32I GATATC 2 cut(s) 132, 630
Eco47I GGWCC 1 cut(s) 418
Eco53kI GAGCTC 1 cut(s) 620
Eco57I CTGAAG 2 cut(s) 164, 258
EcoICRI GAGCTC 1 cut(s) 620
EcoO109I RGGNCCY 1 cut(s) 418
EcoRV GATATC 2 cut(s) 132, 630
EcoT38I GRGCYC 1 cut(s) 622
FaeI CATG 4 cut(s) 916, 942, 1019, 1050
FalI AAGNNNNNCTT 2 cut(s) 137, 169
FaqI GGGAC 1 cut(s) 983
FatI CATG 4 cut(s) 912, 938, 1015, 1046
FauI CCCGC 1 cut(s) 322
FauNDI CATATG 1 cut(s) 814
FbaI TGATCA 2 cut(s) 249, 480
Fnu4HI GCNGC 2 cut(s) 640, 870
FokI GGATG 2 cut(s) 122, 966
FriOI GRGCYC 1 cut(s) 622
Fsp4HI GCNGC 2 cut(s) 640, 870
FspBI CTAG 5 cut(s) 434, 572, 729, 782, 1034
GlaI GCGC 1 cut(s) 200
GluI GCNGC 2 cut(s) 640, 870
GsaI CCCAGC 1 cut(s) 848
GsuI CTGGAG 2 cut(s) 330, 689
HaeII RGCGCY 1 cut(s) 202
HaeIII GGCC 3 cut(s) 14, 186, 642
HapII CCGG 3 cut(s) 77, 195, 576
HhaI GCGC 1 cut(s) 201
Hin1II CATG 4 cut(s) 916, 942, 1019, 1050
Hin6I GCGC 1 cut(s) 199
HinP1I GCGC 1 cut(s) 199
HindIII AAGCTT 1 cut(s) 240
HinfI GANTC 3 cut(s) 98, 789, 971
HpaII CCGG 3 cut(s) 77, 195, 576
Hpy188I TCNGA 4 cut(s) 238, 358, 946, 1025
Hpy188III TCNNGA 4 cut(s) 47, 142, 170, 1047
HpyAV CCTTC 5 cut(s) 53, 379, 409, 653, 985
HpyCH4III ACNGT 4 cut(s) 24, 106, 139, 543
HpyCH4IV ACGT 1 cut(s) 519
HpyCH4V TGCA 8 cut(s) 68, 113, 269, 751, 869, 918, 950, 1010
HpyF10VI GCNNNNNNNGC 6 cut(s) 196, 435, 581, 610, 875, 1007
HpyF3I CTNAG 3 cut(s) 422, 770, 826
HpySE526I ACGT 1 cut(s) 519
Hsp92II CATG 4 cut(s) 916, 942, 1019, 1050
HspAI GCGC 1 cut(s) 199
Ksp22I TGATCA 2 cut(s) 249, 480
Kzo9I GATC 5 cut(s) 249, 277, 480, 533, 1012
LguI GCTCTTC 1 cut(s) 140
LmnI GCTCC 1 cut(s) 617
Lsp1109I GCAGC 1 cut(s) 881
LweI GCATC 3 cut(s) 100, 856, 937
MaeI CTAG 5 cut(s) 434, 572, 729, 782, 1034
MaeII ACGT 1 cut(s) 519
MaeIII GTNAC 2 cut(s) 167, 908
MalI GATC 5 cut(s) 251, 279, 482, 535, 1014
MboI GATC 5 cut(s) 249, 277, 480, 533, 1012
MboII GAAGA 2 cut(s) 157, 875
MflI RGATCY 1 cut(s) 277
MhlI GDGCHC 1 cut(s) 622
MluCI AATT 8 cut(s) 6, 389, 522, 565, 579, 589, 1027, 1040
MlyI GAGTC 2 cut(s) 92, 965
MmeI TCCRAC 3 cut(s) 245, 305, 817
MnlI CCTC 7 cut(s) 38, 176, 334, 387, 448, 547, 703
MroXI GAANNNNTTC 1 cut(s) 834
MseI TTAA 3 cut(s) 9, 294, 525
MslI CAYNNNNRTG 1 cut(s) 937
MspI CCGG 3 cut(s) 77, 195, 576
MspR9I CCNGG 1 cut(s) 196
MwoI GCNNNNNNNGC 6 cut(s) 196, 435, 581, 610, 875, 1007
NciI CCSGG 1 cut(s) 196
NdeI CATATG 1 cut(s) 814
NdeII GATC 5 cut(s) 249, 277, 480, 533, 1012
NlaIII CATG 4 cut(s) 916, 942, 1019, 1050
NlaIV GGNNCC 3 cut(s) 26, 219, 279
NmuCI GTSAC 1 cut(s) 167
NspI RCATGY 2 cut(s) 916, 942
PagI TCATGA 1 cut(s) 1046
PciI ACATGT 2 cut(s) 912, 938
PciSI GCTCTTC 1 cut(s) 140
PdmI GAANNNNTTC 1 cut(s) 834
PfeI GAWTC 1 cut(s) 789
PkrI GCNGC 2 cut(s) 641, 871
PleI GAGTC 2 cut(s) 92, 965
PpsI GAGTC 2 cut(s) 92, 965
Ppu21I YACGTR 1 cut(s) 520
PpuMI RGGWCCY 1 cut(s) 418
PscI ACATGT 2 cut(s) 912, 938
Psp124BI GAGCTC 1 cut(s) 622
Psp5II RGGWCCY 1 cut(s) 418
PspFI CCCAGC 1 cut(s) 844
PspN4I GGNNCC 3 cut(s) 26, 219, 279
PspPI GGNCC 1 cut(s) 418
PspPPI RGGWCCY 1 cut(s) 418
PstNI CAGNNNCTG 1 cut(s) 757
PsuI RGATCY 1 cut(s) 277
RsaI GTAC 3 cut(s) 398, 560, 716
RsaNI GTAC 3 cut(s) 397, 559, 715
RseI CAYNNNNRTG 1 cut(s) 937
SacI GAGCTC 1 cut(s) 622
SapI GCTCTTC 1 cut(s) 140
SaqAI TTAA 3 cut(s) 9, 294, 525
SatI GCNGC 2 cut(s) 640, 870
Sau3AI GATC 5 cut(s) 249, 277, 480, 533, 1012
Sau96I GGNCC 1 cut(s) 418
ScaI AGTACT 1 cut(s) 398
SchI GAGTC 2 cut(s) 92, 965
ScrFI CCNGG 1 cut(s) 196
SduI GDGCHC 1 cut(s) 622
SfaNI GCATC 3 cut(s) 100, 856, 937
SinI GGWCC 1 cut(s) 418
SmiMI CAYNNNNRTG 1 cut(s) 937
SnaBI TACGTA 1 cut(s) 520
SpeI ACTAGT 1 cut(s) 781
Sse9I AATT 8 cut(s) 6, 389, 522, 565, 579, 589, 1027, 1040
SsiI CCGC 2 cut(s) 329, 639
SspMI CTAG 5 cut(s) 434, 572, 729, 782, 1034
SstI GAGCTC 1 cut(s) 622
StyD4I CCNGG 1 cut(s) 194
TaaI ACNGT 4 cut(s) 24, 106, 139, 543
TaiI ACGT 1 cut(s) 522
TaqI TCGA 1 cut(s) 622
TasI AATT 8 cut(s) 6, 389, 522, 565, 579, 589, 1027, 1040
TatI WGTACW 2 cut(s) 396, 714
TauI GCSGC 1 cut(s) 642
TfiI GAWTC 1 cut(s) 789
Tru1I TTAA 3 cut(s) 9, 294, 525
Tru9I TTAA 3 cut(s) 9, 294, 525
TscAI CASTG 1 cut(s) 672
TseFI GTSAC 1 cut(s) 167
TseI GCWGC 1 cut(s) 869
Tsp45I GTSAC 1 cut(s) 167
TspDTI ATGAA 3 cut(s) 220, 583, 1035
TspRI CASTG 1 cut(s) 672
VpaK11BI GGWCC 1 cut(s) 418
XapI RAATTY 2 cut(s) 565, 589
XceI RCATGY 2 cut(s) 916, 942
XmnI GAANNNNTTC 1 cut(s) 834
XspI CTAG 5 cut(s) 434, 572, 729, 782, 1034
ZrmI AGTACT 1 cut(s) 398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.