Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007352

Physical Location & Seq

Genomic Coordinates Reverse (-)

13572885 .. 13575639

Gene Structure 2755 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G27040.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGCGACGACGACCAGGAATTGGAGGATTACAAAAGGCCGCAGCTGCTAGGGATCAGTACCGGTTACTAGGAGAAAATGTAGCCAAGTTACGGACTGATATGATGAAAGAACAGCTCTCCACGTTCCGTTCCCAGCTTGAAGAGTTCGCTCGTAAACACAAGAATGACATTCGTAAGAATCCTGCCTTCAGGGCTCAGTTCCATGAAATGTGTGCTAACATTGGTGTGGATCCTCTTGCTTCTAACAAGGGTTTCTGGGCTGAGCTCCTTGGTATTGGTGACTTCTACTATGAACTTGGAGTTCAGATTATTGAAGTTTGCATGCTTACAAGATCACATAATGGAGGTTTGATCAGCTTGCAAGAGCTCTGCAACCATCTTCGTCAGAGAAGGAAGAAAGACCGTGAAGCTGTGACTGAAGATGATTGTCTTCGAGCTATTAGCAAGCTAAAGGTATTGGGTAGCGGATTTGAGGTTATCACTATTGGCAAGAAAAAGCTTGTCCGTTCAGTACCCACAGAGCTGAACAAAGACCATAACCAGATTTTGGAGTTGGCTCAGGGCCAAGGCTTTGTGATTGTGGAAGAGGTACAAAGACGCCTCTCATGGACATCTGGTCGCGTTATAGATGCTCTCGAAACTTTGTTAGAGGAGGGCCTTGCCATGATCGACAATGGCCATAAAGACGGAAAGTGTCGGTACTGGTTTCCCTGTGTTTCTTCGGTTTACTCATCCATCGGATCTGATACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000814 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0006508 GO:0006511 GO:0006807 GO:0006810 GO:0006886 GO:0007034 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010008 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0016197 GO:0019538 GO:0019941 GO:0030163 GO:0031090 GO:0031410 GO:0031982 GO:0032509 GO:0032511 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0036452 GO:0042886 GO:0043162 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043328 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0045324 GO:0046907 GO:0051179 GO:0051234 GO:0051603 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071985 GO:0072594 GO:0072665 GO:0072666 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

EAP30

Protein Analysis

250

Amino Acids

28.31

Weight (kDa)

9.0

Isoelectric Point (pI)

45.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EAP30	PF04157	6 - 225	1e-56	EAP30/Vps36 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007352)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27040 AT4G27040 AT4G27040 AT4G27040 AT4G27040 AT4G27040
fragaria_vesca	FvH4_3g22390 FvH4_3g22390 FvH4_3g22390
malus_domestica	MD03G1205400.v1.1 MD11G1221300.v1.1
prunus_persica	Prupe.4G210400_v2.0.a1 Prupe.4G210400_v2.0.a1
pyrus_communis	pycom03g15520 pycom11g19520
rosa_chinensis	RchiOBHm_Chr5g0039061
rosa_laevigata	RLG00000033887
rosa_multiflora	Rmu_sc0007753.1_g000005
rosa_roxburghii	Rroxscaffold_1G00042080
rosa_rugosa	Rorug05G0176200
rosa_samantha	Rh5AG262600 Rh5BG267300 Rh5CG300100 Rh5DG273800
rosa_wichuraiana	Rw5G024550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	20, 547
AccII	CGCG	1 cut(s)	621
AciI	CCGC	2 cut(s)	39, 465
AclWI	GGATC	4 cut(s)	60, 224, 237, 748
AcoI	YGGCCR	1 cut(s)	676
AcuI	CTGAAG	2 cut(s)	172, 438
AcyI	GRCGYC	1 cut(s)	598
AfaI	GTAC	4 cut(s)	59, 513, 591, 701
AfiI	CCNNNNNNNGG	3 cut(s)	20, 90, 547
AgeI	ACCGGT	1 cut(s)	60
AgsI	TTSAA	2 cut(s)	140, 314
AhdI	GACNNNNNGTC	1 cut(s)	615
AjnI	CCWGG	1 cut(s)	13
Alw21I	GWGCWC	2 cut(s)	267, 369
AlwI	GGATC	4 cut(s)	60, 224, 237, 748
AoxI	GGCC	4 cut(s)	36, 562, 655, 676
ApeKI	GCWGC	2 cut(s)	41, 44
AsiGI	ACCGGT	1 cut(s)	60
AspS9I	GGNCC	2 cut(s)	562, 655
AsuHPI	GGTGA	1 cut(s)	290
BalI	TGGCCA	1 cut(s)	678
BamHI	GGATCC	1 cut(s)	229
BanII	GRGCYC	3 cut(s)	196, 267, 369
BbsI	GAAGAC	1 cut(s)	422
Bbv12I	GWGCWC	2 cut(s)	267, 369
BbvI	GCAGC	2 cut(s)	31, 53
BccI	CCATC	2 cut(s)	384, 743
BciT130I	CCWGG	1 cut(s)	15
BclI	TGATCA	1 cut(s)	351
BfaI	CTAG	2 cut(s)	48, 68
BglI	GCCNNNNNGGC	1 cut(s)	191
BisI	GCNGC	3 cut(s)	39, 42, 45
BlpI	GCTNAGC	1 cut(s)	261
BlsI	GCNGC	3 cut(s)	40, 43, 46
Bme1390I	CCNGG	1 cut(s)	15
BmeRI	GACNNNNNGTC	1 cut(s)	615
BmgT120I	GGNCC	2 cut(s)	562, 655
BmiI	GGNNCC	1 cut(s)	231
BmrFI	CCNGG	1 cut(s)	15
BmsI	GCATC	1 cut(s)	619
BpiI	GAAGAC	1 cut(s)	422
Bpu10I	CCTNAGC	1 cut(s)	558
Bpu1102I	GCTNAGC	1 cut(s)	261
BsaHI	GRCGYC	1 cut(s)	598
BsaJI	CCNNGG	2 cut(s)	268, 565
BsaWI	WCCGGW	1 cut(s)	60
BsaXI	ACNNNNNCTCC	2 cut(s)	63, 93
Bsc4I	CCNNNNNNNGG	3 cut(s)	20, 90, 547
Bse118I	RCCGGY	1 cut(s)	60
Bse1I	ACTGG	1 cut(s)	707
BseBI	CCWGG	1 cut(s)	15
BseDI	CCNNGG	2 cut(s)	268, 565
BseGI	GGATG	1 cut(s)	731
BseLI	CCNNNNNNNGG	3 cut(s)	20, 90, 547
BseMII	CTCAG	3 cut(s)	209, 252, 572
BseNI	ACTGG	1 cut(s)	707
BseRI	GAGGAG	1 cut(s)	665
BseXI	GCAGC	2 cut(s)	31, 53
BseYI	CCCAGC	1 cut(s)	132
Bsh1236I	CGCG	1 cut(s)	621
BshFI	GGCC	4 cut(s)	38, 564, 657, 678
BshTI	ACCGGT	1 cut(s)	60
BsiHKAI	GWGCWC	2 cut(s)	267, 369
BsiSI	CCGG	1 cut(s)	61
BslI	CCNNNNNNNGG	3 cut(s)	20, 90, 547
BsnI	GGCC	4 cut(s)	38, 564, 657, 678
Bsp1286I	GDGCHC	3 cut(s)	196, 267, 369
Bsp143I	GATC	6 cut(s)	52, 229, 332, 351, 666, 740
Bsp1720I	GCTNAGC	1 cut(s)	261
BspACI	CCGC	2 cut(s)	39, 465
BspANI	GGCC	4 cut(s)	38, 564, 657, 678
BspCNI	CTCAG	3 cut(s)	208, 253, 571
BspFNI	CGCG	1 cut(s)	621
BspLI	GGNNCC	1 cut(s)	231
BspPI	GGATC	4 cut(s)	60, 224, 237, 748
BsrFI	RCCGGY	1 cut(s)	60
BsrI	ACTGG	1 cut(s)	707
BssAI	RCCGGY	1 cut(s)	60
BssECI	CCNNGG	2 cut(s)	268, 565
BssMI	GATC	6 cut(s)	52, 229, 332, 351, 666, 740
BssNI	GRCGYC	1 cut(s)	598
BssT1I	CCWWGG	2 cut(s)	268, 565
Bst2UI	CCWGG	1 cut(s)	15
Bst4CI	ACNGT	1 cut(s)	404
Bst6I	CTCTTC	2 cut(s)	135, 579
BstACI	GRCGYC	1 cut(s)	598
BstC8I	GCNNGC	3 cut(s)	323, 359, 446
BstDEI	CTNAG	3 cut(s)	195, 261, 558
BstF5I	GGATG	1 cut(s)	731
BstFNI	CGCG	1 cut(s)	621
BstKTI	GATC	6 cut(s)	55, 232, 335, 354, 669, 743
BstMBI	GATC	6 cut(s)	52, 229, 332, 351, 666, 740
BstMWI	GCNNNNNNNGC	2 cut(s)	44, 191
BstNI	CCWGG	1 cut(s)	15
BstNSI	RCATGY	1 cut(s)	325
BstSCI	CCNGG	1 cut(s)	13
BstUI	CGCG	1 cut(s)	621
BstV1I	GCAGC	2 cut(s)	31, 53
BstV2I	GAAGAC	1 cut(s)	422
BstX2I	RGATCY	2 cut(s)	229, 740
BstYI	RGATCY	2 cut(s)	229, 740
BsuRI	GGCC	4 cut(s)	38, 564, 657, 678
BtsCI	GGATG	1 cut(s)	731
Cac8I	GCNNGC	3 cut(s)	323, 359, 446
Cfr10I	RCCGGY	1 cut(s)	60
Cfr13I	GGNCC	2 cut(s)	562, 655
CseI	GACGC	1 cut(s)	606
Csp6I	GTAC	4 cut(s)	58, 512, 590, 700
CspAI	ACCGGT	1 cut(s)	60
CviAII	CATG	4 cut(s)	203, 322, 606, 664
CviQI	GTAC	4 cut(s)	58, 512, 590, 700
DdeI	CTNAG	3 cut(s)	195, 261, 558
DpnI	GATC	6 cut(s)	54, 231, 334, 353, 668, 742
DpnII	GATC	6 cut(s)	52, 229, 332, 351, 666, 740
DriI	GACNNNNNGTC	1 cut(s)	615
EaeI	YGGCCR	1 cut(s)	676
Eam1104I	CTCTTC	2 cut(s)	135, 579
Eam1105I	GACNNNNNGTC	1 cut(s)	615
EarI	CTCTTC	2 cut(s)	135, 579
Ecl136II	GAGCTC	2 cut(s)	265, 367
Eco130I	CCWWGG	2 cut(s)	268, 565
Eco24I	GRGCYC	3 cut(s)	196, 267, 369
Eco53kI	GAGCTC	2 cut(s)	265, 367
Eco57I	CTGAAG	2 cut(s)	172, 438
EcoICRI	GAGCTC	2 cut(s)	265, 367
EcoO109I	RGGNCCY	1 cut(s)	655
EcoRII	CCWGG	1 cut(s)	13
EcoT14I	CCWWGG	2 cut(s)	268, 565
EcoT38I	GRGCYC	3 cut(s)	196, 267, 369
ErhI	CCWWGG	2 cut(s)	268, 565
FaeI	CATG	4 cut(s)	206, 325, 609, 667
FatI	CATG	4 cut(s)	202, 321, 605, 663
FbaI	TGATCA	1 cut(s)	351
Fnu4HI	GCNGC	3 cut(s)	39, 42, 45
FokI	GGATG	1 cut(s)	718
FriOI	GRGCYC	3 cut(s)	196, 267, 369
Fsp4HI	GCNGC	3 cut(s)	39, 42, 45
FspBI	CTAG	2 cut(s)	48, 68
GluI	GCNGC	3 cut(s)	39, 42, 45
GsaI	CCCAGC	1 cut(s)	136
HaeIII	GGCC	4 cut(s)	38, 564, 657, 678
HapII	CCGG	1 cut(s)	61
HgaI	GACGC	1 cut(s)	606
Hin1I	GRCGYC	1 cut(s)	598
Hin1II	CATG	4 cut(s)	206, 325, 609, 667
HindIII	AAGCTT	1 cut(s)	497
HinfI	GANTC	1 cut(s)	178
HpaII	CCGG	1 cut(s)	61
HphI	GGTGA	1 cut(s)	290
Hpy166II	GTNNAC	2 cut(s)	155, 727
Hpy188I	TCNGA	4 cut(s)	306, 387, 740, 745
Hpy188III	TCNNGA	1 cut(s)	635
Hpy8I	GTNNAC	2 cut(s)	155, 727
Hpy99I	CGWCG	2 cut(s)	9, 12
HpyAV	CCTTC	2 cut(s)	196, 384
HpyCH4III	ACNGT	1 cut(s)	404
HpyCH4IV	ACGT	1 cut(s)	122
HpyCH4V	TGCA	3 cut(s)	321, 361, 372
HpyF10VI	GCNNNNNNNGC	2 cut(s)	44, 191
HpyF3I	CTNAG	3 cut(s)	195, 261, 558
HpySE526I	ACGT	1 cut(s)	122
Hsp92I	GRCGYC	1 cut(s)	598
Hsp92II	CATG	4 cut(s)	206, 325, 609, 667
Ksp22I	TGATCA	1 cut(s)	351
Kzo9I	GATC	6 cut(s)	52, 229, 332, 351, 666, 740
LmnI	GCTCC	1 cut(s)	270
Lsp1109I	GCAGC	2 cut(s)	31, 53
LweI	GCATC	1 cut(s)	619
MaeI	CTAG	2 cut(s)	48, 68
MaeII	ACGT	1 cut(s)	122
MaeIII	GTNAC	4 cut(s)	63, 87, 278, 412
MalI	GATC	6 cut(s)	54, 231, 334, 353, 668, 742
MboI	GATC	6 cut(s)	52, 229, 332, 351, 666, 740
MboII	GAAGA	7 cut(s)	152, 371, 406, 422, 431, 596, 711
MflI	RGATCY	2 cut(s)	229, 740
MhlI	GDGCHC	3 cut(s)	196, 267, 369
MlsI	TGGCCA	1 cut(s)	678
MluCI	AATT	1 cut(s)	18
MluNI	TGGCCA	1 cut(s)	678
MnlI	CCTC	8 cut(s)	17, 243, 338, 466, 580, 611, 643, 646
Mox20I	TGGCCA	1 cut(s)	678
MscI	TGGCCA	1 cut(s)	678
MseI	TTAA	1 cut(s)	751
MslI	CAYNNNNRTG	2 cut(s)	162, 224
Msp20I	TGGCCA	1 cut(s)	678
MspA1I	CMGCKG	1 cut(s)	44
MspI	CCGG	1 cut(s)	61
MspR9I	CCNGG	1 cut(s)	15
MvaI	CCWGG	1 cut(s)	15
MvnI	CGCG	1 cut(s)	621
MwoI	GCNNNNNNNGC	2 cut(s)	44, 191
NdeII	GATC	6 cut(s)	52, 229, 332, 351, 666, 740
NlaIII	CATG	4 cut(s)	206, 325, 609, 667
NlaIV	GGNNCC	1 cut(s)	231
NmuCI	GTSAC	2 cut(s)	278, 412
NspI	RCATGY	1 cut(s)	325
PaeI	GCATGC	1 cut(s)	325
PfeI	GAWTC	1 cut(s)	178
PflMI	CCANNNNNTGG	2 cut(s)	20, 547
PinAI	ACCGGT	1 cut(s)	60
PkrI	GCNGC	3 cut(s)	40, 43, 46
Psp124BI	GAGCTC	2 cut(s)	267, 369
Psp6I	CCWGG	1 cut(s)	13
PspFI	CCCAGC	1 cut(s)	132
PspGI	CCWGG	1 cut(s)	13
PspN4I	GGNNCC	1 cut(s)	231
PspPI	GGNCC	2 cut(s)	562, 655
PsuI	RGATCY	2 cut(s)	229, 740
PvuII	CAGCTG	1 cut(s)	44
RsaI	GTAC	4 cut(s)	59, 513, 591, 701
RsaNI	GTAC	4 cut(s)	58, 512, 590, 700
RseI	CAYNNNNRTG	2 cut(s)	162, 224
SacI	GAGCTC	2 cut(s)	267, 369
SaqAI	TTAA	1 cut(s)	751
SatI	GCNGC	3 cut(s)	39, 42, 45
Sau3AI	GATC	6 cut(s)	52, 229, 332, 351, 666, 740
Sau96I	GGNCC	2 cut(s)	562, 655
ScrFI	CCNGG	1 cut(s)	15
SduI	GDGCHC	3 cut(s)	196, 267, 369
SfaNI	GCATC	1 cut(s)	619
SmiMI	CAYNNNNRTG	2 cut(s)	162, 224
SphI	GCATGC	1 cut(s)	325
Sse9I	AATT	1 cut(s)	18
SsiI	CCGC	2 cut(s)	39, 465
SspMI	CTAG	2 cut(s)	48, 68
SstI	GAGCTC	2 cut(s)	267, 369
StyD4I	CCNGG	1 cut(s)	13
StyI	CCWWGG	2 cut(s)	268, 565
TaaI	ACNGT	1 cut(s)	404
TaiI	ACGT	1 cut(s)	125
TaqI	TCGA	3 cut(s)	433, 636, 669
TasI	AATT	1 cut(s)	18
TauI	GCSGC	1 cut(s)	41
TfiI	GAWTC	1 cut(s)	178
Tru1I	TTAA	1 cut(s)	751
Tru9I	TTAA	1 cut(s)	751
TseFI	GTSAC	2 cut(s)	278, 412
TseI	GCWGC	2 cut(s)	41, 44
Tsp45I	GTSAC	2 cut(s)	278, 412
TspDTI	ATGAA	3 cut(s)	119, 219, 306
TspGWI	ACGGA	4 cut(s)	106, 116, 494, 702
Van91I	CCANNNNNTGG	2 cut(s)	20, 547
XceI	RCATGY	1 cut(s)	325
XspI	CTAG	2 cut(s)	48, 68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.