Rh5CG300100

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0007352
Physical Location & Seq
Forward (+)
33051144 .. 33084882
33739 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG300100.1

Sequence Viewer

Length: 1197 bp
ATGCAACGATTCGAGGATGTAATTGATGATTGTGGCCTTCAGGATGTTGGGGTTTCGGGGCCATTTTTTACTTGGAGAAGAGGTGAGCTGTTGGAACGATTGGATAGATGCCTAATTAATCAGGGGGCTGCAGATCTATATCTGCGTATTCATGAACTTCATGTGGATGCGGGGGCCTCAGATCATATACCTATTGTTATCTTTCCTGATGGATTACTGAGGCAAAATAGCGAAAGGAGAAAAAGCCGTCGGAGGTTCCATTTTGAAGCATTCTGGACGAAGGAAGCGGAGTGTGGCAGAATTGTTTCTGAGATATGGGATACGGGAGGTGATGTGCAAACTGTTGGGGCTAAATTACAGTTGGTGGCTCAAGGTTTGGAGCAGTGGAATCGTAATACTTTTGGGAACATCCCAAGACAGATCAATAGACTAAATGGTGAGTTACAAGCCTACCCTTTTGACACTGCAGATAATAGGATGCTGGAGAAAAGAACTTTGGTGACTGAAGAATTAAGAAAGTTGATGGAAGGGCGCAGGAATCGGGTTGGGAGAATCGCGAATAGTTTGGGGGAGTGGCAGGAGTCAAAGGAAGGCATTCAGCAAGCCTTTATTAGTTACTTCCAACTCCTCTTCACATCGGAGGGGTGTAACCACATAGATATGGTGCTTAACGCTATTCCAAGAAAGTCATCGCATTTGAGACCCAACTTTAGCTTCCCCTTCTTCAACTCTATCAAAAATGCTGCTGCTGCTAGGGACCAATATCGGGCGCTGGGCCAGAATGTGGCCCAGATTAGAACTGATCTCATGAAGGAACAGCTTGCCACTTTTAAAAGCCAATTAGAAGATTTTGCTCGCAAACACAAGGTCCAGTTTTTTTTCCAGCACTTTCAGAAGAAATTTGGTGAATCTTTTTCTTATTGGAATAAATTTGTATTGACTGTTAATATGGATGCACAGAATGACATTCGCAAGAATCCTGCTTTTAGATCACAATTTCATGATATGTGCACTAAGGTTGGAGTAGACCCCTTGGCCTCCAATAAGGGTTTCTGGGCAGAGCTTTTGGGGATCGGTGACTTCTACTATGAACTTGGTTGGTACCATCTTCCTAGTGTCTTTGCATATCTGCAAGATTGGCTATTCTTATTGTTACTGCTAAATAGTTTAGATACTCATGCTCCAGGCTCCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

398

Amino Acids

46.17

Weight (kDa)

8.2

Isoelectric Point (pI)

38.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EAP30 PF04157 320 - 366 2.6e-08 EAP30/Vps36 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1101
AccB1I GGYRCC 1 cut(s) 1101
AccB7I CCANNNNNTGG 1 cut(s) 784
AccI GTMKAC 1 cut(s) 1026
AccII CGCG 1 cut(s) 557
AciI CCGC 2 cut(s) 170, 287
AclWI GGATC 1 cut(s) 1079
AcsI RAATTY 2 cut(s) 899, 929
AcuI CTGAAG 2 cut(s) 23, 525
AfaI GTAC 1 cut(s) 1103
AfiI CCNNNNNNNGG 2 cut(s) 766, 784
AgsI TTSAA 2 cut(s) 266, 727
AjnI CCWGG 1 cut(s) 1183
AjuI GAANNNNNNNTTGG 6 cut(s) 479, 511, 698, 730, 1034, 1066
AluBI AGCT 4 cut(s) 88, 714, 820, 1063
AluI AGCT 4 cut(s) 88, 714, 820, 1063
Alw21I GWGCWC 1 cut(s) 1013
Alw26I GTCTC 1 cut(s) 694
Alw44I GTGCAC 1 cut(s) 1009
AlwI GGATC 1 cut(s) 1079
AoxI GGCC 6 cut(s) 34, 59, 174, 775, 786, 1035
ApaLI GTGCAC 1 cut(s) 1009
ApeKI GCWGC 4 cut(s) 128, 743, 746, 749
ApoI RAATTY 2 cut(s) 899, 929
ArsI GACNNNNNNTTYG 2 cut(s) 852, 884
AseI ATTAAT 1 cut(s) 117
Asp700I GAANNNNTTC 2 cut(s) 304, 594
Asp718I GGTACC 1 cut(s) 1101
AspLEI GCGC 2 cut(s) 534, 772
AspS9I GGNCC 6 cut(s) 59, 174, 757, 775, 787, 868
AsuHPI GGTGA 6 cut(s) 95, 341, 449, 511, 917, 1088
AvaII GGWCC 2 cut(s) 757, 868
BaeGI GKGCMC 1 cut(s) 1013
BanI GGYRCC 1 cut(s) 1101
Bbv12I GWGCWC 1 cut(s) 1013
BbvI GCAGC 4 cut(s) 115, 730, 733, 736
BccI CCATC 3 cut(s) 203, 517, 1113
BceAI ACGGC 1 cut(s) 231
BcgI CGANNNNNNTGC 2 cut(s) 371, 405
BciT130I CCWGG 1 cut(s) 1185
BciVI GTATCC 1 cut(s) 313
BcoDI GTCTC 1 cut(s) 694
BfaI CTAG 2 cut(s) 753, 1113
BfmI CTRYAG 2 cut(s) 129, 465
BfoI RGCGCY 1 cut(s) 773
BfuI GTATCC 1 cut(s) 313
BglII AGATCT 1 cut(s) 133
BisI GCNGC 4 cut(s) 129, 744, 747, 750
BlsI GCNGC 4 cut(s) 130, 745, 748, 751
Bme1390I CCNGG 1 cut(s) 1185
Bme18I GGWCC 2 cut(s) 757, 868
BmgT120I GGNCC 6 cut(s) 59, 174, 757, 775, 787, 868
BmiI GGNNCC 6 cut(s) 60, 175, 257, 758, 1103, 1189
BmrFI CCNGG 1 cut(s) 1185
BmsI GCATC 4 cut(s) 98, 157, 468, 943
BpmI CTGGAG 2 cut(s) 503, 1167
BpuEI CTTGAG 1 cut(s) 354
BsaBI GATNNNNATC 1 cut(s) 138
BsaI GGTCTC 1 cut(s) 694
BsaJI CCNNGG 1 cut(s) 1032
BsaXI ACNNNNNCTCC 6 cut(s) 67, 97, 318, 348, 1165, 1195
Bsc4I CCNNNNNNNGG 2 cut(s) 766, 784
Bse1I ACTGG 1 cut(s) 871
Bse8I GATNNNNATC 1 cut(s) 138
BseBI CCWGG 1 cut(s) 1185
BseDI CCNNGG 1 cut(s) 1032
BseGI GGATG 6 cut(s) 22, 49, 172, 408, 483, 958
BseJI GATNNNNATC 1 cut(s) 138
BseLI CCNNNNNNNGG 2 cut(s) 766, 784
BseMII CTCAG 3 cut(s) 192, 209, 300
BseNI ACTGG 1 cut(s) 871
BseRI GAGGAG 1 cut(s) 617
BseSI GKGCMC 1 cut(s) 1013
BseXI GCAGC 4 cut(s) 115, 730, 733, 736
BseYI CCCAGC 1 cut(s) 772
Bsh1236I CGCG 1 cut(s) 557
BshFI GGCC 6 cut(s) 36, 61, 176, 777, 788, 1037
BshNI GGYRCC 1 cut(s) 1101
BsiHKAI GWGCWC 1 cut(s) 1013
BslFI GGGAC 1 cut(s) 770
BslI CCNNNNNNNGG 2 cut(s) 766, 784
BsmAI GTCTC 1 cut(s) 694
BsmFI GGGAC 1 cut(s) 770
BsmI GAATGC 2 cut(s) 269, 594
BsnI GGCC 6 cut(s) 36, 61, 176, 777, 788, 1037
Bso31I GGTCTC 1 cut(s) 694
Bsp1286I GDGCHC 1 cut(s) 1013
Bsp143I GATC 6 cut(s) 133, 181, 420, 802, 989, 1071
Bsp68I TCGCGA 1 cut(s) 557
BspACI CCGC 2 cut(s) 170, 287
BspANI GGCC 6 cut(s) 36, 61, 176, 777, 788, 1037
BspCNI CTCAG 3 cut(s) 191, 210, 301
BspFNI CGCG 1 cut(s) 557
BspHI TCATGA 3 cut(s) 151, 807, 1000
BspLI GGNNCC 6 cut(s) 60, 175, 257, 758, 1103, 1189
BspMAI CTGCAG 2 cut(s) 133, 469
BspPI GGATC 1 cut(s) 1079
BspT107I GGYRCC 1 cut(s) 1101
BspTNI GGTCTC 1 cut(s) 694
BsrI ACTGG 1 cut(s) 871
BssECI CCNNGG 1 cut(s) 1032
BssMI GATC 6 cut(s) 133, 181, 420, 802, 989, 1071
BssT1I CCWWGG 1 cut(s) 1032
Bst2UI CCWGG 1 cut(s) 1185
Bst4CI ACNGT 3 cut(s) 343, 360, 943
Bst6I CTCTTC 2 cut(s) 73, 635
BstC8I GCNNGC 3 cut(s) 603, 822, 856
BstDEI CTNAG 4 cut(s) 178, 218, 309, 1014
BstF5I GGATG 6 cut(s) 22, 49, 172, 408, 483, 958
BstFNI CGCG 1 cut(s) 557
BstH2I RGCGCY 1 cut(s) 773
BstHHI GCGC 2 cut(s) 534, 772
BstKTI GATC 6 cut(s) 136, 184, 423, 805, 992, 1074
BstMAI GTCTC 1 cut(s) 694
BstMBI GATC 6 cut(s) 133, 181, 420, 802, 989, 1071
BstMWI GCNNNNNNNGC 2 cut(s) 749, 1138
BstNI CCWGG 1 cut(s) 1185
BstSCI CCNGG 1 cut(s) 1183
BstSFI CTRYAG 2 cut(s) 129, 465
BstSLI GKGCMC 1 cut(s) 1013
BstUI CGCG 1 cut(s) 557
BstV1I GCAGC 4 cut(s) 115, 730, 733, 736
BstX2I RGATCY 1 cut(s) 133
BstYI RGATCY 1 cut(s) 133
BsuI GTATCC 1 cut(s) 313
BsuRI GGCC 6 cut(s) 36, 61, 176, 777, 788, 1037
BtgZI GCGATG 1 cut(s) 675
BtsCI GGATG 6 cut(s) 22, 49, 172, 408, 483, 958
BtsI GCAGTG 2 cut(s) 389, 462
BtsIMutI CAGTG 2 cut(s) 389, 462
BtuMI TCGCGA 1 cut(s) 557
Cac8I GCNNGC 3 cut(s) 603, 822, 856
CciI TCATGA 3 cut(s) 151, 807, 1000
CfoI GCGC 2 cut(s) 534, 772
Cfr13I GGNCC 6 cut(s) 59, 174, 757, 775, 787, 868
Csp6I GTAC 1 cut(s) 1102
CviAII CATG 5 cut(s) 152, 161, 808, 1001, 1178
CviQI GTAC 1 cut(s) 1102
DdeI CTNAG 4 cut(s) 178, 218, 309, 1014
DpnI GATC 6 cut(s) 135, 183, 422, 804, 991, 1073
DpnII GATC 6 cut(s) 133, 181, 420, 802, 989, 1071
DraI TTTAAA 1 cut(s) 832
Eam1104I CTCTTC 2 cut(s) 73, 635
EarI CTCTTC 2 cut(s) 73, 635
Eco130I CCWWGG 1 cut(s) 1032
Eco31I GGTCTC 1 cut(s) 694
Eco47I GGWCC 2 cut(s) 757, 868
Eco57I CTGAAG 2 cut(s) 23, 525
EcoO109I RGGNCCY 1 cut(s) 174
EcoRII CCWGG 1 cut(s) 1183
EcoT14I CCWWGG 1 cut(s) 1032
ErhI CCWWGG 1 cut(s) 1032
FaeI CATG 5 cut(s) 155, 164, 811, 1004, 1181
FaqI GGGAC 1 cut(s) 770
FatI CATG 5 cut(s) 151, 160, 807, 1000, 1177
FauI CCCGC 1 cut(s) 163
FblI GTMKAC 1 cut(s) 1026
Fnu4HI GCNGC 4 cut(s) 129, 744, 747, 750
FokI GGATG 6 cut(s) 29, 56, 179, 395, 490, 965
Fsp4HI GCNGC 4 cut(s) 129, 744, 747, 750
FspBI CTAG 2 cut(s) 753, 1113
GlaI GCGC 2 cut(s) 533, 771
GluI GCNGC 4 cut(s) 129, 744, 747, 750
GsaI CCCAGC 1 cut(s) 776
GsuI CTGGAG 2 cut(s) 503, 1167
HaeII RGCGCY 1 cut(s) 773
HaeIII GGCC 6 cut(s) 36, 61, 176, 777, 788, 1037
HhaI GCGC 2 cut(s) 534, 772
Hin1II CATG 5 cut(s) 155, 164, 811, 1004, 1181
Hin6I GCGC 2 cut(s) 532, 770
HinP1I GCGC 2 cut(s) 532, 770
HinfI GANTC 7 cut(s) 9, 388, 538, 552, 581, 908, 976
HphI GGTGA 6 cut(s) 95, 341, 449, 511, 917, 1088
Hpy166II GTNNAC 2 cut(s) 1011, 1027
Hpy188I TCNGA 5 cut(s) 181, 252, 310, 640, 894
Hpy188III TCNNGA 7 cut(s) 41, 152, 206, 274, 556, 808, 1001
Hpy8I GTNNAC 2 cut(s) 1011, 1027
Hpy99I CGWCG 1 cut(s) 252
HpyAV CCTTC 6 cut(s) 47, 274, 521, 584, 730, 805
HpyCH4III ACNGT 3 cut(s) 343, 360, 943
HpyCH4V TGCA 8 cut(s) 4, 131, 337, 467, 956, 1011, 1124, 1132
HpyF10VI GCNNNNNNNGC 2 cut(s) 749, 1138
HpyF3I CTNAG 4 cut(s) 178, 218, 309, 1014
Hsp92II CATG 5 cut(s) 155, 164, 811, 1004, 1181
HspAI GCGC 2 cut(s) 532, 770
KpnI GGTACC 1 cut(s) 1105
Kzo9I GATC 6 cut(s) 133, 181, 420, 802, 989, 1071
LmnI GCTCC 3 cut(s) 379, 1186, 1193
Lsp1109I GCAGC 4 cut(s) 115, 730, 733, 736
LweI GCATC 4 cut(s) 98, 157, 468, 943
MaeI CTAG 2 cut(s) 753, 1113
MaeIII GTNAC 6 cut(s) 441, 499, 614, 647, 1076, 1152
MalI GATC 6 cut(s) 135, 183, 422, 804, 991, 1073
MboI GATC 6 cut(s) 133, 181, 420, 802, 989, 1071
MboII GAAGA 7 cut(s) 90, 518, 622, 715, 857, 907, 1100
MflI RGATCY 1 cut(s) 133
MhlI GDGCHC 1 cut(s) 1013
MluCI AATT 9 cut(s) 21, 114, 300, 353, 509, 839, 899, 929, 995
MlyI GAGTC 1 cut(s) 590
MmeI TCCRAC 4 cut(s) 72, 230, 646, 1000
MnlI CCTC 9 cut(s) 7, 74, 187, 213, 246, 320, 634, 638, 1048
MroXI GAANNNNTTC 2 cut(s) 304, 594
MseI TTAA 5 cut(s) 117, 512, 669, 831, 945
MslI CAYNNNNRTG 2 cut(s) 165, 659
MspR9I CCNGG 1 cut(s) 1185
Mva1269I GAATGC 2 cut(s) 269, 594
MvaI CCWGG 1 cut(s) 1185
MvnI CGCG 1 cut(s) 557
MwoI GCNNNNNNNGC 2 cut(s) 749, 1138
NdeII GATC 6 cut(s) 133, 181, 420, 802, 989, 1071
NlaIII CATG 5 cut(s) 155, 164, 811, 1004, 1181
NlaIV GGNNCC 6 cut(s) 60, 175, 257, 758, 1103, 1189
NmuCI GTSAC 2 cut(s) 499, 1076
NruI TCGCGA 1 cut(s) 557
PagI TCATGA 3 cut(s) 151, 807, 1000
PctI GAATGC 2 cut(s) 269, 594
PdmI GAANNNNTTC 2 cut(s) 304, 594
PfeI GAWTC 6 cut(s) 9, 388, 538, 552, 908, 976
PflMI CCANNNNNTGG 1 cut(s) 784
PkrI GCNGC 4 cut(s) 130, 745, 748, 751
PleI GAGTC 1 cut(s) 589
PpsI GAGTC 1 cut(s) 589
PshBI ATTAAT 1 cut(s) 117
Psp6I CCWGG 1 cut(s) 1183
PspFI CCCAGC 1 cut(s) 772
PspGI CCWGG 1 cut(s) 1183
PspN4I GGNNCC 6 cut(s) 60, 175, 257, 758, 1103, 1189
PspPI GGNCC 6 cut(s) 59, 174, 757, 775, 787, 868
PstI CTGCAG 2 cut(s) 133, 469
PsuI RGATCY 1 cut(s) 133
RruI TCGCGA 1 cut(s) 557
RsaI GTAC 1 cut(s) 1103
RsaNI GTAC 1 cut(s) 1102
RseI CAYNNNNRTG 2 cut(s) 165, 659
SaqAI TTAA 5 cut(s) 117, 512, 669, 831, 945
SatI GCNGC 4 cut(s) 129, 744, 747, 750
Sau3AI GATC 6 cut(s) 133, 181, 420, 802, 989, 1071
Sau96I GGNCC 6 cut(s) 59, 174, 757, 775, 787, 868
SchI GAGTC 1 cut(s) 590
ScrFI CCNGG 1 cut(s) 1185
SduI GDGCHC 1 cut(s) 1013
SfaNI GCATC 4 cut(s) 98, 157, 468, 943
SfcI CTRYAG 2 cut(s) 129, 465
SinI GGWCC 2 cut(s) 757, 868
SmiMI CAYNNNNRTG 2 cut(s) 165, 659
SmlI CTYRAG 1 cut(s) 369
SmoI CTYRAG 1 cut(s) 369
Sse9I AATT 9 cut(s) 21, 114, 300, 353, 509, 839, 899, 929, 995
SsiI CCGC 2 cut(s) 170, 287
SspMI CTAG 2 cut(s) 753, 1113
StyD4I CCNGG 1 cut(s) 1183
StyI CCWWGG 1 cut(s) 1032
TaaI ACNGT 3 cut(s) 343, 360, 943
TaqI TCGA 1 cut(s) 12
TasI AATT 9 cut(s) 21, 114, 300, 353, 509, 839, 899, 929, 995
TfiI GAWTC 6 cut(s) 9, 388, 538, 552, 908, 976
Tru1I TTAA 5 cut(s) 117, 512, 669, 831, 945
Tru9I TTAA 5 cut(s) 117, 512, 669, 831, 945
TscAI CASTG 2 cut(s) 389, 469
TseFI GTSAC 2 cut(s) 499, 1076
TseI GCWGC 4 cut(s) 128, 743, 746, 749
Tsp45I GTSAC 2 cut(s) 499, 1076
TspDTI ATGAA 6 cut(s) 140, 149, 168, 824, 989, 1104
TspRI CASTG 2 cut(s) 389, 469
Van91I CCANNNNNTGG 1 cut(s) 784
VneI GTGCAC 1 cut(s) 1009
VpaK11BI GGWCC 2 cut(s) 757, 868
VspI ATTAAT 1 cut(s) 117
XapI RAATTY 2 cut(s) 899, 929
XcmI CCANNNNNNNNNTGG 1 cut(s) 69
XmiI GTMKAC 1 cut(s) 1026
XmnI GAANNNNTTC 2 cut(s) 304, 594
XspI CTAG 2 cut(s) 753, 1113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.