Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0007352

Physical Location & Seq

Genomic Coordinates Reverse (-)

16768081 .. 16770052

Gene Structure 1972 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g15520.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGAGGAGGAGACCTGGAATCGGCGGCTTGCAGAACGCCGCCGCCTCTAGGGACCAATATCGTCTGCTGGGCGAGAATGTTGCCAAGATCAGAACCGATCTCATGAAGGAGCAGCTCACCACTTTCCGAACGCAGTTGGAAGATTTTGCTCGGAAGCACAAGAATGACATTCGAAAGAACCCAGCTTTCAGATCACAATTTCACAACATGTGCACGAAGGTCGGAGTAGATCCCTTGGCATCCAATAAGGGTTTCTGGGCAGAGCTTTTGGGGATTGGTGATTTCTACTATGAACTTGGGGTGCAAATTGTTGACATTTGCTTGGCAACAAGACCCCACAATGGGGGTTTGATCAACCTGCAGGAACTCTGCAGTCTGCTTCGTCAGAGGCGGAAGAGCGACCGTGAAGCTGTTTCTGAGGATGATTGCCTGCGTGCTATAAGCAAGCTCAAGGTATTAGGTAATGGTTATGAGGTTATTTCTGTTGGAAAGAGAAAGCTTGTTCGTTCTGTTCCAACTGAGTTGAACAAAGACCATAACGAAATTTTAGAGCTAGCCCAGGCTCAAGGCTTTGTGACTGTCCCTGAGGTGGAGAGACGGCTATCTTGGACTACTGGTCGTGCAATCGATGCCTTTGACACTTTATTAGATGAGGGTCTTGCAATGATTGATGATGGTCACAAAGATGGTGTACGCCGATATTGGTTCCCCTGTGTATCTTCCATCTCCGCTCCACTAGGAGCCGACAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

EAP30

Protein Analysis

251

Amino Acids

28.13

Weight (kDa)

8.79

Isoelectric Point (pI)

43.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007352)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27040 AT4G27040 AT4G27040 AT4G27040 AT4G27040 AT4G27040
fragaria_vesca	FvH4_3g22390 FvH4_3g22390 FvH4_3g22390
malus_domestica	MD03G1205400.v1.1 MD11G1221300.v1.1
prunus_persica	Prupe.4G210400_v2.0.a1 Prupe.4G210400_v2.0.a1
pyrus_communis	pycom03g15520 pycom11g19520
rosa_chinensis	RchiOBHm_Chr5g0039061
rosa_laevigata	RLG00000033887
rosa_multiflora	Rmu_sc0007753.1_g000005
rosa_roxburghii	Rroxscaffold_1G00042080
rosa_rugosa	Rorug05G0176200
rosa_samantha	Rh5AG262600 Rh5BG267300 Rh5CG300100 Rh5DG273800
rosa_wichuraiana	Rw5G024550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	366
AccBSI	CCGCTC	1 cut(s)	731
AciI	CCGC	5 cut(s)	24, 39, 42, 391, 729
AclWI	GGATC	1 cut(s)	224
AcsI	RAATTY	1 cut(s)	543
AfaI	GTAC	1 cut(s)	693
AfiI	CCNNNNNNNGG	6 cut(s)	20, 48, 341, 342, 343, 589
AflIII	ACRYGT	1 cut(s)	207
AgsI	TTSAA	1 cut(s)	526
AhdI	GACNNNNNGTC	1 cut(s)	615
AjnI	CCWGG	2 cut(s)	13, 558
AjuI	GAANNNNNNNTTGG	2 cut(s)	236, 268
AluBI	AGCT	7 cut(s)	115, 185, 265, 410, 448, 499, 553
AluI	AGCT	7 cut(s)	115, 185, 265, 410, 448, 499, 553
Alw21I	GWGCWC	1 cut(s)	215
Alw26I	GTCTC	2 cut(s)	4, 589
Alw44I	GTGCAC	1 cut(s)	211
AlwI	GGATC	1 cut(s)	224
ApaLI	GTGCAC	1 cut(s)	211
ApeKI	GCWGC	1 cut(s)	112
ApoI	RAATTY	1 cut(s)	543
AspS9I	GGNCC	1 cut(s)	52
AsuHPI	GGTGA	2 cut(s)	109, 290
AsuII	TTCGAA	1 cut(s)	172
AsuNHI	GCTAGC	1 cut(s)	553
AvaII	GGWCC	1 cut(s)	52
AxyI	CCTNAGG	1 cut(s)	585
BaeGI	GKGCMC	1 cut(s)	215
Bbv12I	GWGCWC	1 cut(s)	215
BbvI	GCAGC	1 cut(s)	124
BccI	CCATC	3 cut(s)	668, 680, 731
BceAI	ACGGC	1 cut(s)	614
BcgI	CGANNNNNNTGC	4 cut(s)	62, 96, 202, 236
BciT130I	CCWGG	2 cut(s)	15, 560
BclI	TGATCA	1 cut(s)	351
BcoDI	GTCTC	2 cut(s)	4, 589
BfaI	CTAG	3 cut(s)	48, 554, 737
BfmI	CTRYAG	2 cut(s)	359, 370
BfuAI	ACCTGC	1 cut(s)	366
BisI	GCNGC	4 cut(s)	25, 39, 42, 113
BlsI	GCNGC	4 cut(s)	26, 40, 43, 114
Bme1390I	CCNGG	2 cut(s)	15, 560
Bme18I	GGWCC	1 cut(s)	52
BmeRI	GACNNNNNGTC	1 cut(s)	615
BmgT120I	GGNCC	1 cut(s)	52
BmiI	GGNNCC	3 cut(s)	53, 707, 742
BmrFI	CCNGG	2 cut(s)	15, 560
BmsI	GCATC	2 cut(s)	248, 619
BmtI	GCTAGC	1 cut(s)	557
Bpu14I	TTCGAA	1 cut(s)	172
BpuEI	CTTGAG	2 cut(s)	434, 549
Bsa29I	ATCGAT	1 cut(s)	627
BsaI	GGTCTC	1 cut(s)	4
BsaJI	CCNNGG	2 cut(s)	234, 558
Bsc4I	CCNNNNNNNGG	6 cut(s)	20, 48, 341, 342, 343, 589
Bse1I	ACTGG	1 cut(s)	619
Bse21I	CCTNAGG	1 cut(s)	585
Bse3DI	GCAATG	1 cut(s)	669
BseBI	CCWGG	2 cut(s)	15, 560
BseCI	ATCGAT	1 cut(s)	627
BseDI	CCNNGG	2 cut(s)	234, 558
BseGI	GGATG	2 cut(s)	239, 427
BseLI	CCNNNNNNNGG	6 cut(s)	20, 48, 341, 342, 343, 589
BseMI	GCAATG	1 cut(s)	669
BseMII	CTCAG	3 cut(s)	408, 510, 576
BseNI	ACTGG	1 cut(s)	619
BseRI	GAGGAG	2 cut(s)	19, 22
BseSI	GKGCMC	1 cut(s)	215
BseXI	GCAGC	1 cut(s)	124
BseYI	CCCAGC	2 cut(s)	67, 181
Bsh1285I	CGRYCG	1 cut(s)	403
BshVI	ATCGAT	1 cut(s)	627
BsiEI	CGRYCG	1 cut(s)	403
BsiHKAI	GWGCWC	1 cut(s)	215
BslFI	GGGAC	2 cut(s)	65, 566
BslI	CCNNNNNNNGG	6 cut(s)	20, 48, 341, 342, 343, 589
BsmAI	GTCTC	2 cut(s)	4, 589
BsmBI	CGTCTC	1 cut(s)	589
BsmFI	GGGAC	2 cut(s)	65, 566
Bso31I	GGTCTC	1 cut(s)	4
Bsp119I	TTCGAA	1 cut(s)	172
Bsp1286I	GDGCHC	1 cut(s)	215
Bsp143I	GATC	5 cut(s)	87, 97, 191, 229, 351
BspACI	CCGC	5 cut(s)	24, 39, 42, 391, 729
BspCNI	CTCAG	3 cut(s)	409, 511, 577
BspDI	ATCGAT	1 cut(s)	627
BspHI	TCATGA	1 cut(s)	102
BspLI	GGNNCC	3 cut(s)	53, 707, 742
BspMAI	CTGCAG	2 cut(s)	363, 374
BspMI	ACCTGC	1 cut(s)	366
BspOI	GCTAGC	1 cut(s)	557
BspPI	GGATC	1 cut(s)	224
BspQI	GCTCTTC	1 cut(s)	389
BspT104I	TTCGAA	1 cut(s)	172
BspTNI	GGTCTC	1 cut(s)	4
BsrBI	CCGCTC	1 cut(s)	731
BsrDI	GCAATG	1 cut(s)	669
BsrI	ACTGG	1 cut(s)	619
BssECI	CCNNGG	2 cut(s)	234, 558
BssMI	GATC	5 cut(s)	87, 97, 191, 229, 351
BssT1I	CCWWGG	1 cut(s)	234
Bst2UI	CCWGG	2 cut(s)	15, 560
Bst4CI	ACNGT	3 cut(s)	404, 580, 749
Bst6I	CTCTTC	1 cut(s)	389
BstAPI	GCANNNNNTGC	1 cut(s)	629
BstBI	TTCGAA	1 cut(s)	172
BstC8I	GCNNGC	5 cut(s)	29, 431, 435, 446, 555
BstDEI	CTNAG	3 cut(s)	417, 519, 585
BstF5I	GGATG	2 cut(s)	239, 427
BstKTI	GATC	5 cut(s)	90, 100, 194, 232, 354
BstMAI	GTCTC	2 cut(s)	4, 589
BstMBI	GATC	5 cut(s)	87, 97, 191, 229, 351
BstMCI	CGRYCG	1 cut(s)	403
BstMWI	GCNNNNNNNGC	1 cut(s)	629
BstNI	CCWGG	2 cut(s)	15, 560
BstNSI	RCATGY	1 cut(s)	211
BstSCI	CCNGG	2 cut(s)	13, 558
BstSFI	CTRYAG	2 cut(s)	359, 370
BstSLI	GKGCMC	1 cut(s)	215
BstV1I	GCAGC	1 cut(s)	124
BstX2I	RGATCY	1 cut(s)	229
BstYI	RGATCY	1 cut(s)	229
Bsu15I	ATCGAT	1 cut(s)	627
Bsu36I	CCTNAGG	1 cut(s)	585
BsuTUI	ATCGAT	1 cut(s)	627
BtsCI	GGATG	2 cut(s)	239, 427
BveI	ACCTGC	1 cut(s)	366
Cac8I	GCNNGC	5 cut(s)	29, 431, 435, 446, 555
CciI	TCATGA	1 cut(s)	102
Cfr13I	GGNCC	1 cut(s)	52
ClaI	ATCGAT	1 cut(s)	627
Csp6I	GTAC	1 cut(s)	692
CviAII	CATG	2 cut(s)	103, 208
CviQI	GTAC	1 cut(s)	692
DdeI	CTNAG	3 cut(s)	417, 519, 585
DpnI	GATC	5 cut(s)	89, 99, 193, 231, 353
DpnII	GATC	5 cut(s)	87, 97, 191, 229, 351
DriI	GACNNNNNGTC	1 cut(s)	615
Eam1104I	CTCTTC	1 cut(s)	389
Eam1105I	GACNNNNNGTC	1 cut(s)	615
EarI	CTCTTC	1 cut(s)	389
EciI	GGCGGA	1 cut(s)	406
Eco130I	CCWWGG	1 cut(s)	234
Eco31I	GGTCTC	1 cut(s)	4
Eco47I	GGWCC	1 cut(s)	52
Eco81I	CCTNAGG	1 cut(s)	585
EcoRII	CCWGG	2 cut(s)	13, 558
EcoT14I	CCWWGG	1 cut(s)	234
ErhI	CCWWGG	1 cut(s)	234
Esp3I	CGTCTC	1 cut(s)	589
FaeI	CATG	2 cut(s)	106, 211
FaiI	YATR	6 cut(s)	104, 209, 291, 440, 471, 537
FaqI	GGGAC	2 cut(s)	65, 566
FatI	CATG	2 cut(s)	102, 207
FbaI	TGATCA	1 cut(s)	351
Fnu4HI	GCNGC	4 cut(s)	25, 39, 42, 113
FokI	GGATG	2 cut(s)	226, 434
Fsp4HI	GCNGC	4 cut(s)	25, 39, 42, 113
FspBI	CTAG	3 cut(s)	48, 554, 737
GluI	GCNGC	4 cut(s)	25, 39, 42, 113
GsaI	CCCAGC	2 cut(s)	71, 185
Hin1II	CATG	2 cut(s)	106, 211
HincII	GTYRAC	1 cut(s)	313
HindII	GTYRAC	1 cut(s)	313
HindIII	AAGCTT	1 cut(s)	497
HinfI	GANTC	1 cut(s)	18
HphI	GGTGA	2 cut(s)	109, 290
Hpy166II	GTNNAC	3 cut(s)	213, 313, 692
Hpy188I	TCNGA	7 cut(s)	92, 128, 153, 191, 224, 387, 418
Hpy188III	TCNNGA	1 cut(s)	103
Hpy8I	GTNNAC	3 cut(s)	213, 313, 692
HpyAV	CCTTC	2 cut(s)	100, 211
HpyCH4III	ACNGT	3 cut(s)	404, 580, 749
HpyCH4V	TGCA	7 cut(s)	31, 213, 304, 361, 372, 623, 662
HpyF10VI	GCNNNNNNNGC	1 cut(s)	629
HpyF3I	CTNAG	3 cut(s)	417, 519, 585
Hsp92II	CATG	2 cut(s)	106, 211
Ksp22I	TGATCA	1 cut(s)	351
Kzo9I	GATC	5 cut(s)	87, 97, 191, 229, 351
LguI	GCTCTTC	1 cut(s)	389
LmnI	GCTCC	3 cut(s)	109, 736, 740
Lsp1109I	GCAGC	1 cut(s)	124
LweI	GCATC	2 cut(s)	248, 619
MaeI	CTAG	3 cut(s)	48, 554, 737
MaeIII	GTNAC	2 cut(s)	574, 677
MalI	GATC	5 cut(s)	89, 99, 193, 231, 353
MbiI	CCGCTC	1 cut(s)	731
MboI	GATC	5 cut(s)	87, 97, 191, 229, 351
MboII	GAAGA	3 cut(s)	152, 406, 711
MflI	RGATCY	1 cut(s)	229
MhlI	GDGCHC	1 cut(s)	215
MluCI	AATT	3 cut(s)	197, 306, 543
MmeI	TCCRAC	4 cut(s)	117, 202, 466, 539
MnlI	CCTC	6 cut(s)	55, 381, 412, 466, 580, 646
MseI	TTAA	1 cut(s)	751
MslI	CAYNNNNRTG	2 cut(s)	162, 684
MspR9I	CCNGG	2 cut(s)	15, 560
MvaI	CCWGG	2 cut(s)	15, 560
MwoI	GCNNNNNNNGC	1 cut(s)	629
NdeII	GATC	5 cut(s)	87, 97, 191, 229, 351
NheI	GCTAGC	1 cut(s)	553
NlaIII	CATG	2 cut(s)	106, 211
NlaIV	GGNNCC	3 cut(s)	53, 707, 742
NmuCI	GTSAC	2 cut(s)	574, 677
NspI	RCATGY	1 cut(s)	211
NspV	TTCGAA	1 cut(s)	172
PagI	TCATGA	1 cut(s)	102
PciI	ACATGT	1 cut(s)	207
PciSI	GCTCTTC	1 cut(s)	389
PfeI	GAWTC	1 cut(s)	18
PkrI	GCNGC	4 cut(s)	26, 40, 43, 114
PscI	ACATGT	1 cut(s)	207
Psp6I	CCWGG	2 cut(s)	13, 558
PspFI	CCCAGC	2 cut(s)	67, 181
PspGI	CCWGG	2 cut(s)	13, 558
PspN4I	GGNNCC	3 cut(s)	53, 707, 742
PspPI	GGNCC	1 cut(s)	52
PstI	CTGCAG	2 cut(s)	363, 374
PsuI	RGATCY	1 cut(s)	229
RsaI	GTAC	1 cut(s)	693
RsaNI	GTAC	1 cut(s)	692
RseI	CAYNNNNRTG	2 cut(s)	162, 684
SapI	GCTCTTC	1 cut(s)	389
SaqAI	TTAA	1 cut(s)	751
SatI	GCNGC	4 cut(s)	25, 39, 42, 113
Sau3AI	GATC	5 cut(s)	87, 97, 191, 229, 351
Sau96I	GGNCC	1 cut(s)	52
SbfI	CCTGCAGG	1 cut(s)	363
ScrFI	CCNGG	2 cut(s)	15, 560
SdaI	CCTGCAGG	1 cut(s)	363
SduI	GDGCHC	1 cut(s)	215
SfaNI	GCATC	2 cut(s)	248, 619
SfcI	CTRYAG	2 cut(s)	359, 370
SfuI	TTCGAA	1 cut(s)	172
SinI	GGWCC	1 cut(s)	52
SmiMI	CAYNNNNRTG	2 cut(s)	162, 684
SmlI	CTYRAG	2 cut(s)	449, 564
SmoI	CTYRAG	2 cut(s)	449, 564
Sse8387I	CCTGCAGG	1 cut(s)	363
Sse9I	AATT	3 cut(s)	197, 306, 543
SsiI	CCGC	5 cut(s)	24, 39, 42, 391, 729
SspMI	CTAG	3 cut(s)	48, 554, 737
StyD4I	CCNGG	2 cut(s)	13, 558
StyI	CCWWGG	1 cut(s)	234
TaaI	ACNGT	3 cut(s)	404, 580, 749
TaqI	TCGA	2 cut(s)	172, 627
TasI	AATT	3 cut(s)	197, 306, 543
TauI	GCSGC	3 cut(s)	27, 41, 44
TfiI	GAWTC	1 cut(s)	18
Tru1I	TTAA	1 cut(s)	751
Tru9I	TTAA	1 cut(s)	751
TseFI	GTSAC	2 cut(s)	574, 677
TseI	GCWGC	1 cut(s)	112
Tsp45I	GTSAC	2 cut(s)	574, 677
TspDTI	ATGAA	2 cut(s)	119, 306
VneI	GTGCAC	1 cut(s)	211
VpaK11BI	GGWCC	1 cut(s)	52
XapI	RAATTY	1 cut(s)	543
XceI	RCATGY	1 cut(s)	211
XspI	CTAG	3 cut(s)	48, 554, 737

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.