Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0007352

Physical Location & Seq

Genomic Coordinates Reverse (-)

22048910 .. 22049743

Gene Structure 834 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g19520.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGAGGAGGAGACCTGGAATCGGCGGCTTGCAGACCGCTGCCGCCGCTAGGGACCAATATCGTCAGCTGGGCGATAATGTTGCCAAGATCAGGACCGATCTCATGAAGGAGCAGCTCACCACTTTCCGAACCCAGTTGGAAGATTTCGCTCGAAAGCACAAGAATGACATTCGAAAGAACCCAGCTTTCAGATCACAATTTCATAACATGTGCACCAAGGTAGGAATCGATCCATTGGCATCCAATAAGGGCTTTTGGGCAGAGCTTTTGGGGATTGGTGATTTCTACTATGAACTTGGGGTGCAAATTGTTGACATTTGCTTGGCAACAAGACCCCACAATGGGGGTTTGATCGAACCTGCAGGAACTATGCAGTCTGCTTCGTCAGAGGCGGAAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

EAP30

Protein Analysis

134

Amino Acids

14.88

Weight (kDa)

8.64

Isoelectric Point (pI)

51.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007352)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27040 AT4G27040 AT4G27040 AT4G27040 AT4G27040 AT4G27040
fragaria_vesca	FvH4_3g22390 FvH4_3g22390 FvH4_3g22390
malus_domestica	MD03G1205400.v1.1 MD11G1221300.v1.1
prunus_persica	Prupe.4G210400_v2.0.a1 Prupe.4G210400_v2.0.a1
pyrus_communis	pycom03g15520 pycom11g19520
rosa_chinensis	RchiOBHm_Chr5g0039061
rosa_laevigata	RLG00000033887
rosa_multiflora	Rmu_sc0007753.1_g000005
rosa_roxburghii	Rroxscaffold_1G00042080
rosa_rugosa	Rorug05G0176200
rosa_samantha	Rh5AG262600 Rh5BG267300 Rh5CG300100 Rh5DG273800
rosa_wichuraiana	Rw5G024550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	367
AciI	CCGC	5 cut(s)	24, 36, 42, 45, 392
AclWI	GGATC	1 cut(s)	224
AfiI	CCNNNNNNNGG	6 cut(s)	20, 48, 90, 341, 342, 343
AflIII	ACRYGT	1 cut(s)	207
AjnI	CCWGG	1 cut(s)	13
AluBI	AGCT	4 cut(s)	67, 115, 185, 265
AluI	AGCT	4 cut(s)	67, 115, 185, 265
Alw21I	GWGCWC	1 cut(s)	215
Alw26I	GTCTC	1 cut(s)	4
Alw44I	GTGCAC	1 cut(s)	211
AlwI	GGATC	1 cut(s)	224
ApaLI	GTGCAC	1 cut(s)	211
ApeKI	GCWGC	2 cut(s)	38, 112
AspS9I	GGNCC	2 cut(s)	52, 93
AsuHPI	GGTGA	2 cut(s)	109, 290
AsuII	TTCGAA	1 cut(s)	172
AvaII	GGWCC	2 cut(s)	52, 93
BaeGI	GKGCMC	1 cut(s)	215
Bbv12I	GWGCWC	1 cut(s)	215
BbvI	GCAGC	2 cut(s)	25, 124
BcgI	CGANNNNNNTGC	2 cut(s)	62, 96
BciT130I	CCWGG	1 cut(s)	15
BcoDI	GTCTC	1 cut(s)	4
BfaI	CTAG	1 cut(s)	48
BfmI	CTRYAG	1 cut(s)	360
BfuAI	ACCTGC	1 cut(s)	367
BisI	GCNGC	5 cut(s)	25, 39, 42, 45, 113
BlsI	GCNGC	5 cut(s)	26, 40, 43, 46, 114
Bme1390I	CCNGG	1 cut(s)	15
Bme18I	GGWCC	2 cut(s)	52, 93
BmgT120I	GGNCC	2 cut(s)	52, 93
BmiI	GGNNCC	1 cut(s)	53
BmrFI	CCNGG	1 cut(s)	15
BmrI	ACTGGG	1 cut(s)	127
BmsI	GCATC	1 cut(s)	248
BmuI	ACTGGG	1 cut(s)	127
Bpu14I	TTCGAA	1 cut(s)	172
Bsa29I	ATCGAT	1 cut(s)	228
BsaI	GGTCTC	1 cut(s)	4
BsaJI	CCNNGG	1 cut(s)	216
Bsc4I	CCNNNNNNNGG	6 cut(s)	20, 48, 90, 341, 342, 343
Bse1I	ACTGG	1 cut(s)	133
BseBI	CCWGG	1 cut(s)	15
BseCI	ATCGAT	1 cut(s)	228
BseDI	CCNNGG	1 cut(s)	216
BseGI	GGATG	1 cut(s)	239
BseLI	CCNNNNNNNGG	6 cut(s)	20, 48, 90, 341, 342, 343
BseNI	ACTGG	1 cut(s)	133
BseRI	GAGGAG	2 cut(s)	19, 22
BseSI	GKGCMC	1 cut(s)	215
BseXI	GCAGC	2 cut(s)	25, 124
BseYI	CCCAGC	2 cut(s)	67, 181
BshVI	ATCGAT	1 cut(s)	228
BsiHKAI	GWGCWC	1 cut(s)	215
BslFI	GGGAC	1 cut(s)	65
BslI	CCNNNNNNNGG	6 cut(s)	20, 48, 90, 341, 342, 343
BsmAI	GTCTC	1 cut(s)	4
BsmFI	GGGAC	1 cut(s)	65
Bso31I	GGTCTC	1 cut(s)	4
Bsp119I	TTCGAA	1 cut(s)	172
Bsp1286I	GDGCHC	1 cut(s)	215
Bsp143I	GATC	5 cut(s)	87, 97, 191, 229, 351
BspACI	CCGC	5 cut(s)	24, 36, 42, 45, 392
BspDI	ATCGAT	1 cut(s)	228
BspHI	TCATGA	1 cut(s)	102
BspLI	GGNNCC	1 cut(s)	53
BspMAI	CTGCAG	1 cut(s)	364
BspMI	ACCTGC	1 cut(s)	367
BspPI	GGATC	1 cut(s)	224
BspT104I	TTCGAA	1 cut(s)	172
BspTNI	GGTCTC	1 cut(s)	4
BsrI	ACTGG	1 cut(s)	133
BssECI	CCNNGG	1 cut(s)	216
BssMI	GATC	5 cut(s)	87, 97, 191, 229, 351
BssT1I	CCWWGG	1 cut(s)	216
Bst2UI	CCWGG	1 cut(s)	15
Bst6I	CTCTTC	1 cut(s)	390
BstBI	TTCGAA	1 cut(s)	172
BstC8I	GCNNGC	1 cut(s)	29
BstF5I	GGATG	1 cut(s)	239
BstKTI	GATC	5 cut(s)	90, 100, 194, 232, 354
BstMAI	GTCTC	1 cut(s)	4
BstMBI	GATC	5 cut(s)	87, 97, 191, 229, 351
BstMWI	GCNNNNNNNGC	1 cut(s)	44
BstNI	CCWGG	1 cut(s)	15
BstNSI	RCATGY	1 cut(s)	211
BstSCI	CCNGG	1 cut(s)	13
BstSFI	CTRYAG	1 cut(s)	360
BstSLI	GKGCMC	1 cut(s)	215
BstV1I	GCAGC	2 cut(s)	25, 124
Bsu15I	ATCGAT	1 cut(s)	228
BsuTUI	ATCGAT	1 cut(s)	228
BtsCI	GGATG	1 cut(s)	239
BveI	ACCTGC	1 cut(s)	367
Cac8I	GCNNGC	1 cut(s)	29
CciI	TCATGA	1 cut(s)	102
Cfr13I	GGNCC	2 cut(s)	52, 93
ClaI	ATCGAT	1 cut(s)	228
CviAII	CATG	2 cut(s)	103, 208
CviJI	RGCY	6 cut(s)	27, 67, 115, 185, 252, 265
CviKI_1	RGCY	6 cut(s)	27, 67, 115, 185, 252, 265
DpnI	GATC	5 cut(s)	89, 99, 193, 231, 353
DpnII	GATC	5 cut(s)	87, 97, 191, 229, 351
Eam1104I	CTCTTC	1 cut(s)	390
EarI	CTCTTC	1 cut(s)	390
Eco130I	CCWWGG	1 cut(s)	216
Eco31I	GGTCTC	1 cut(s)	4
Eco47I	GGWCC	2 cut(s)	52, 93
EcoRII	CCWGG	1 cut(s)	13
EcoT14I	CCWWGG	1 cut(s)	216
ErhI	CCWWGG	1 cut(s)	216
FaeI	CATG	2 cut(s)	106, 211
FaiI	YATR	5 cut(s)	104, 204, 209, 291, 371
FaqI	GGGAC	1 cut(s)	65
FatI	CATG	2 cut(s)	102, 207
Fnu4HI	GCNGC	5 cut(s)	25, 39, 42, 45, 113
FokI	GGATG	1 cut(s)	226
Fsp4HI	GCNGC	5 cut(s)	25, 39, 42, 45, 113
FspBI	CTAG	1 cut(s)	48
GluI	GCNGC	5 cut(s)	25, 39, 42, 45, 113
GsaI	CCCAGC	2 cut(s)	71, 185
Hin1II	CATG	2 cut(s)	106, 211
HincII	GTYRAC	1 cut(s)	313
HindII	GTYRAC	1 cut(s)	313
HinfI	GANTC	2 cut(s)	18, 225
HphI	GGTGA	2 cut(s)	109, 290
Hpy166II	GTNNAC	2 cut(s)	213, 313
Hpy188I	TCNGA	3 cut(s)	128, 191, 388
Hpy188III	TCNNGA	2 cut(s)	91, 103
Hpy8I	GTNNAC	2 cut(s)	213, 313
HpyAV	CCTTC	1 cut(s)	100
HpyCH4V	TGCA	5 cut(s)	31, 213, 304, 362, 373
HpyF10VI	GCNNNNNNNGC	1 cut(s)	44
Hsp92II	CATG	2 cut(s)	106, 211
Kzo9I	GATC	5 cut(s)	87, 97, 191, 229, 351
LmnI	GCTCC	1 cut(s)	109
LpnPI	CCDG	7 cut(s)	27, 53, 76, 146, 195, 348, 372
Lsp1109I	GCAGC	2 cut(s)	25, 124
LweI	GCATC	1 cut(s)	248
MaeI	CTAG	1 cut(s)	48
MalI	GATC	5 cut(s)	89, 99, 193, 231, 353
MboI	GATC	5 cut(s)	87, 97, 191, 229, 351
MboII	GAAGA	1 cut(s)	152
MhlI	GDGCHC	1 cut(s)	215
MluCI	AATT	2 cut(s)	197, 306
MmeI	TCCRAC	1 cut(s)	117
MnlI	CCTC	1 cut(s)	382
MslI	CAYNNNNRTG	1 cut(s)	162
MspA1I	CMGCKG	2 cut(s)	38, 67
MspR9I	CCNGG	1 cut(s)	15
MvaI	CCWGG	1 cut(s)	15
MwoI	GCNNNNNNNGC	1 cut(s)	44
NdeII	GATC	5 cut(s)	87, 97, 191, 229, 351
NlaIII	CATG	2 cut(s)	106, 211
NlaIV	GGNNCC	1 cut(s)	53
NspI	RCATGY	1 cut(s)	211
NspV	TTCGAA	1 cut(s)	172
PagI	TCATGA	1 cut(s)	102
PciI	ACATGT	1 cut(s)	207
PfeI	GAWTC	2 cut(s)	18, 225
PkrI	GCNGC	5 cut(s)	26, 40, 43, 46, 114
PscI	ACATGT	1 cut(s)	207
Psp6I	CCWGG	1 cut(s)	13
PspFI	CCCAGC	2 cut(s)	67, 181
PspGI	CCWGG	1 cut(s)	13
PspN4I	GGNNCC	1 cut(s)	53
PspPI	GGNCC	2 cut(s)	52, 93
PstI	CTGCAG	1 cut(s)	364
PvuII	CAGCTG	1 cut(s)	67
RseI	CAYNNNNRTG	1 cut(s)	162
SatI	GCNGC	5 cut(s)	25, 39, 42, 45, 113
Sau3AI	GATC	5 cut(s)	87, 97, 191, 229, 351
Sau96I	GGNCC	2 cut(s)	52, 93
SbfI	CCTGCAGG	1 cut(s)	364
ScrFI	CCNGG	1 cut(s)	15
SdaI	CCTGCAGG	1 cut(s)	364
SduI	GDGCHC	1 cut(s)	215
SetI	ASST	7 cut(s)	16, 69, 117, 187, 222, 267, 361
SfaNI	GCATC	1 cut(s)	248
SfcI	CTRYAG	1 cut(s)	360
SfuI	TTCGAA	1 cut(s)	172
SinI	GGWCC	2 cut(s)	52, 93
SmiMI	CAYNNNNRTG	1 cut(s)	162
Sse8387I	CCTGCAGG	1 cut(s)	364
Sse9I	AATT	2 cut(s)	197, 306
SsiI	CCGC	5 cut(s)	24, 36, 42, 45, 392
SspMI	CTAG	1 cut(s)	48
StyD4I	CCNGG	1 cut(s)	13
StyI	CCWWGG	1 cut(s)	216
TaqI	TCGA	4 cut(s)	151, 172, 228, 354
TaqII	GACCGA	1 cut(s)	110
TasI	AATT	2 cut(s)	197, 306
TauI	GCSGC	3 cut(s)	27, 44, 47
TfiI	GAWTC	2 cut(s)	18, 225
TseI	GCWGC	2 cut(s)	38, 112
TspDTI	ATGAA	3 cut(s)	119, 191, 306
VneI	GTGCAC	1 cut(s)	211
VpaK11BI	GGWCC	2 cut(s)	52, 93
XceI	RCATGY	1 cut(s)	211
XspI	CTAG	1 cut(s)	48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.