AT4G27100

TBC1 domain family member

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Forward (+)
13595458 .. 13598963
3506 bp
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UTR
Exon/CDS
Intron
AT4G27100.2

Sequence Viewer

Length: 1311 bp
ATGTGGGGAGGCGCAGGTGAGCCAGCAGATTCTTACTACCAAGTTCGTCCTGAGTGCACCGATGTCCCCAAGACCAGATTCAAAATCAAGCCTGGTAAAACTCTAAGTGTAAGAAAATGGCAGGCTGTATTTGTACAAGAAGGGTCTCTCCATATTGGCAAGACTCTAAGACGCATCCGAAGAGGGGGAATCCATCCATCAATTAGAGGCGAAGTATGGGAATTCCTACTTGGTTGTTATGACCCAATGAGCACATTCGAAGAAAGAGAGCAAATTCGACAACGCAGAAGATTGCAGTATGCTTCTTGGAAGGAAGAGTGTAAGCAAATGTTTCCTGTCATTGGAAGTGGAAGATTTACTACCGCACCTGTAATTACTGAAAATGGTCAACCCAACTATGATCCTCTTGTACTTCAGGAAATAAATTTAGGTACAAACTCAAATGGTTCAGTTTTTTTTAAAGAGCTCACAAGTCGTGGACCTCTTGATAAAAAAATTATCCAATGGCTGCTAACACTTCACCAGATAGGTCTTGATGTGAACCGTACAGACAGGGCCTTGGTATTTTATGAGAAAAAGGAGAACTTATCGAAGCTCTGGGATATTCTGTCTGTTTACGCCTGGATAGACAACGATGTCGGGTATTGTCAAGGAATGAGTGATCTTTGTTCCCCAATGATTATTCTTCTTGAAGACGAAGCTGATGCATTTTGGTGTTTTGAACGGCTCATGCGTCGATTGCGAGGAAATTTCCGTAGTACCGGGAGATCTGTTGGAGTTGAAGCTCAACTTACTCATTTGTCTTCAATTACTCAGGTTGTTGACCCCAAACTTCACCAACATCTAGATAAACTTGGGGGAGGTGACTATCTCTTTGCCATCCGGATGCTAATGGTTCAATTCCGAAGAGAATTCTCATTTTGCGACTCTCTGTACCTTTGGGAGATGATGTGGGCCCTCGAGTATGACCCCGATCTTTTTTATGTATATGAGGCGCATCAATGCGGGAATGAGAAAACAGAAGGGTTAAAAGGTAAACCGAAGTCAATTAAGCAATGTGGAAAGTATGAGAGGCAAAACATGAGGAATGGAGGAAAAAGTGCAGAAGGTCCTTTACCTATATCGGTATTTCTAGTGGCCAGTGTCTTGAAAGACAAGAGTTATAAGCTAATGACTGAAGCTCGTGGACTCGACGATGTTGTTAAGATACTTAACGATACGACTGGGAACTTGGATGCCAAAAAAACATGTTCTGGAGCCATAAAAATTCACAAGAGATATCTAAGAAAGGTTATTTCTATGTTTCTTTGA

Protein Analysis

436

Amino Acids

50.16

Weight (kDa)

9.04

Isoelectric Point (pI)

38.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RabGAP-TBC PF00566 168 - 329 8.5e-37 Rab-GTPase-TBC domain
RabGap-TBC_2 PF23436 198 - 317 1.8e-08 RabGAP TBC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1164
AarI CACCTGC 1 cut(s) 5
AasI GACNNNNNNGTC 1 cut(s) 635
Acc36I ACCTGC 1 cut(s) 5
AccIII TCCGGA 1 cut(s) 882
AciI CCGC 2 cut(s) 363, 1005
AclWI GGATC 1 cut(s) 395
AcoI YGGCCR 1 cut(s) 1137
AcsI RAATTY 6 cut(s) 221, 273, 424, 748, 911, 1266
AcuI CTGAAG 2 cut(s) 398, 1197
AfaI GTAC 6 cut(s) 135, 411, 433, 547, 760, 935
AfiI CCNNNNNNNGG 2 cut(s) 184, 341
AflIII ACRYGT 1 cut(s) 1247
AgsI TTSAA 7 cut(s) 82, 692, 722, 782, 807, 899, 1150
AjnI CCWGG 2 cut(s) 91, 620
AjuI GAANNNNNNNTTGG 4 cut(s) 62, 94, 213, 245
AluBI AGCT 6 cut(s) 466, 595, 701, 785, 1168, 1181
AluI AGCT 6 cut(s) 466, 595, 701, 785, 1168, 1181
Alw21I GWGCWC 3 cut(s) 59, 254, 468
Alw26I GTCTC 1 cut(s) 150
Alw44I GTGCAC 1 cut(s) 55
AlwI GGATC 1 cut(s) 395
Ama87I CYCGRG 1 cut(s) 959
Aor13HI TCCGGA 1 cut(s) 882
AoxI GGCC 3 cut(s) 555, 954, 1137
ApaI GGGCCC 1 cut(s) 958
ApaLI GTGCAC 1 cut(s) 55
ApeKI GCWGC 1 cut(s) 508
ApoI RAATTY 6 cut(s) 221, 273, 424, 748, 911, 1266
ArsI GACNNNNNNTTYG 2 cut(s) 857, 889
AspLEI GCGC 2 cut(s) 14, 997
AspS9I GGNCC 5 cut(s) 479, 555, 954, 955, 1109
AsuC2I CCSGG 1 cut(s) 763
AsuHPI GGTGA 4 cut(s) 29, 512, 827, 875
AsuII TTCGAA 1 cut(s) 258
AvaI CYCGRG 1 cut(s) 959
AvaII GGWCC 2 cut(s) 479, 1109
BaeGI GKGCMC 2 cut(s) 59, 958
BalI TGGCCA 1 cut(s) 1139
BanII GRGCYC 2 cut(s) 468, 958
BarI GAAGNNNNNNTAC 4 cut(s) 343, 375, 1098, 1130
BauI CACGAG 1 cut(s) 1182
BbsI GAAGAC 2 cut(s) 699, 795
Bbv12I GWGCWC 3 cut(s) 59, 254, 468
BbvI GCAGC 1 cut(s) 495
BccI CCATC 3 cut(s) 201, 205, 887
BceAI ACGGC 1 cut(s) 740
BcgI CGANNNNNNTGC 2 cut(s) 686, 720
BciT130I CCWGG 2 cut(s) 93, 622
BcnI CCSGG 1 cut(s) 763
BcoDI GTCTC 1 cut(s) 150
BfaI CTAG 2 cut(s) 845, 1133
BfuAI ACCTGC 1 cut(s) 5
BglII AGATCT 1 cut(s) 767
BisI GCNGC 1 cut(s) 509
BlsI GCNGC 1 cut(s) 510
Bme1390I CCNGG 3 cut(s) 93, 622, 763
Bme18I GGWCC 2 cut(s) 479, 1109
BmeT110I CYCGRG 1 cut(s) 959
BmgT120I GGNCC 5 cut(s) 479, 555, 954, 955, 1109
BmiI GGNNCC 2 cut(s) 956, 1258
BmrFI CCNGG 3 cut(s) 93, 622, 763
BmrI ACTGGG 1 cut(s) 1233
BmsI GCATC 5 cut(s) 183, 694, 876, 1006, 1225
BmuI ACTGGG 1 cut(s) 1233
BpiI GAAGAC 2 cut(s) 699, 795
BpmI CTGGAG 1 cut(s) 1275
Bpu14I TTCGAA 1 cut(s) 258
BpuMI CCSGG 1 cut(s) 763
BsaI GGTCTC 1 cut(s) 150
BsaJI CCNNGG 1 cut(s) 558
BsaWI WCCGGW 1 cut(s) 882
BsaXI ACNNNNNCTCC 2 cut(s) 935, 965
Bsc4I CCNNNNNNNGG 2 cut(s) 184, 341
Bse1I ACTGG 2 cut(s) 1140, 1228
Bse3DI GCAATG 1 cut(s) 1061
BseAI TCCGGA 1 cut(s) 882
BseBI CCWGG 2 cut(s) 93, 622
BseDI CCNNGG 1 cut(s) 558
BseGI GGATG 5 cut(s) 174, 193, 879, 891, 1240
BseLI CCNNNNNNNGG 2 cut(s) 184, 341
BseMI GCAATG 1 cut(s) 1061
BseMII CTCAG 2 cut(s) 42, 827
BseNI ACTGG 2 cut(s) 1140, 1228
BseSI GKGCMC 2 cut(s) 59, 958
BseXI GCAGC 1 cut(s) 495
BsgI GTGCAG 1 cut(s) 1122
BshFI GGCC 3 cut(s) 557, 956, 1139
BsiHKAI GWGCWC 3 cut(s) 59, 254, 468
BsiHKCI CYCGRG 1 cut(s) 959
BsiSI CCGG 2 cut(s) 762, 883
BslFI GGGAC 1 cut(s) 50
BslI CCNNNNNNNGG 2 cut(s) 184, 341
BsmAI GTCTC 1 cut(s) 150
BsmFI GGGAC 1 cut(s) 50
BsnI GGCC 3 cut(s) 557, 956, 1139
Bso31I GGTCTC 1 cut(s) 150
BsoBI CYCGRG 1 cut(s) 959
Bsp119I TTCGAA 1 cut(s) 258
Bsp120I GGGCCC 1 cut(s) 954
Bsp1286I GDGCHC 4 cut(s) 59, 254, 468, 958
Bsp13I TCCGGA 1 cut(s) 882
Bsp1407I TGTACA 1 cut(s) 133
Bsp143I GATC 4 cut(s) 400, 661, 767, 973
BspACI CCGC 2 cut(s) 363, 1005
BspANI GGCC 3 cut(s) 557, 956, 1139
BspCNI CTCAG 2 cut(s) 43, 826
BspEI TCCGGA 1 cut(s) 882
BspLI GGNNCC 2 cut(s) 956, 1258
BspMI ACCTGC 1 cut(s) 5
BspPI GGATC 1 cut(s) 395
BspT104I TTCGAA 1 cut(s) 258
BspTNI GGTCTC 1 cut(s) 150
BsrDI GCAATG 1 cut(s) 1061
BsrGI TGTACA 1 cut(s) 133
BsrI ACTGG 2 cut(s) 1140, 1228
BssECI CCNNGG 1 cut(s) 558
BssMI GATC 4 cut(s) 400, 661, 767, 973
BssSI CACGAG 1 cut(s) 1182
BssT1I CCWWGG 1 cut(s) 558
Bst2BI CACGAG 1 cut(s) 1182
Bst2UI CCWGG 2 cut(s) 93, 622
Bst4CI ACNGT 1 cut(s) 545
Bst6I CTCTTC 3 cut(s) 175, 309, 901
BstAUI TGTACA 1 cut(s) 133
BstBI TTCGAA 1 cut(s) 258
BstC8I GCNNGC 2 cut(s) 24, 123
BstDEI CTNAG 5 cut(s) 51, 104, 167, 813, 1283
BstF5I GGATG 5 cut(s) 174, 193, 879, 891, 1240
BstHHI GCGC 2 cut(s) 14, 997
BstKTI GATC 4 cut(s) 403, 664, 770, 976
BstMAI GTCTC 1 cut(s) 150
BstMBI GATC 4 cut(s) 400, 661, 767, 973
BstMWI GCNNNNNNNGC 1 cut(s) 739
BstNI CCWGG 2 cut(s) 93, 622
BstNSI RCATGY 1 cut(s) 1251
BstSCI CCNGG 3 cut(s) 91, 620, 761
BstSLI GKGCMC 2 cut(s) 59, 958
BstV1I GCAGC 1 cut(s) 495
BstV2I GAAGAC 2 cut(s) 699, 795
BstX2I RGATCY 1 cut(s) 767
BstYI RGATCY 1 cut(s) 767
BsuRI GGCC 3 cut(s) 557, 956, 1139
BtsCI GGATG 5 cut(s) 174, 193, 879, 891, 1240
BtsIMutI CAGTG 1 cut(s) 1147
BveI ACCTGC 1 cut(s) 5
Cac8I GCNNGC 2 cut(s) 24, 123
CfoI GCGC 2 cut(s) 14, 997
Cfr13I GGNCC 5 cut(s) 479, 555, 954, 955, 1109
CseI GACGC 2 cut(s) 180, 722
Csp6I GTAC 6 cut(s) 134, 410, 432, 546, 759, 934
CviAII CATG 3 cut(s) 730, 1081, 1248
CviQI GTAC 6 cut(s) 134, 410, 432, 546, 759, 934
DdeI CTNAG 5 cut(s) 51, 104, 167, 813, 1283
DpnI GATC 4 cut(s) 402, 663, 769, 975
DpnII GATC 4 cut(s) 400, 661, 767, 973
DraI TTTAAA 1 cut(s) 460
DrdI GACNNNNNNGTC 1 cut(s) 635
DseDI GACNNNNNNGTC 1 cut(s) 635
EaeI YGGCCR 1 cut(s) 1137
Eam1104I CTCTTC 3 cut(s) 175, 309, 901
EarI CTCTTC 3 cut(s) 175, 309, 901
Ecl136II GAGCTC 1 cut(s) 466
Eco130I CCWWGG 1 cut(s) 558
Eco24I GRGCYC 2 cut(s) 468, 958
Eco31I GGTCTC 1 cut(s) 150
Eco32I GATATC 1 cut(s) 1280
Eco47I GGWCC 2 cut(s) 479, 1109
Eco53kI GAGCTC 1 cut(s) 466
Eco57I CTGAAG 2 cut(s) 398, 1197
Eco88I CYCGRG 1 cut(s) 959
EcoICRI GAGCTC 1 cut(s) 466
EcoO109I RGGNCCY 3 cut(s) 555, 955, 1109
EcoRI GAATTC 2 cut(s) 221, 911
EcoRII CCWGG 2 cut(s) 91, 620
EcoRV GATATC 1 cut(s) 1280
EcoT14I CCWWGG 1 cut(s) 558
EcoT22I ATGCAT 1 cut(s) 709
EcoT38I GRGCYC 2 cut(s) 468, 958
ErhI CCWWGG 1 cut(s) 558
FaeI CATG 3 cut(s) 733, 1084, 1251
FalI AAGNNNNNCTT 4 cut(s) 569, 601, 774, 806
FaqI GGGAC 1 cut(s) 50
FatI CATG 3 cut(s) 729, 1080, 1247
FauI CCCGC 1 cut(s) 998
Fnu4HI GCNGC 1 cut(s) 509
FokI GGATG 5 cut(s) 161, 180, 866, 898, 1247
FriOI GRGCYC 2 cut(s) 468, 958
Fsp4HI GCNGC 1 cut(s) 509
FspBI CTAG 2 cut(s) 845, 1133
GlaI GCGC 2 cut(s) 13, 996
GluI GCNGC 1 cut(s) 509
GsuI CTGGAG 1 cut(s) 1275
HaeIII GGCC 3 cut(s) 557, 956, 1139
HapII CCGG 2 cut(s) 762, 883
HgaI GACGC 2 cut(s) 180, 722
HhaI GCGC 2 cut(s) 14, 997
Hin1II CATG 3 cut(s) 733, 1084, 1251
Hin6I GCGC 2 cut(s) 12, 995
HinP1I GCGC 2 cut(s) 12, 995
HincII GTYRAC 2 cut(s) 389, 823
HindII GTYRAC 2 cut(s) 389, 823
HinfI GANTC 6 cut(s) 29, 78, 163, 189, 926, 1188
HpaII CCGG 2 cut(s) 762, 883
HphI GGTGA 4 cut(s) 29, 512, 827, 875
Hpy166II GTNNAC 8 cut(s) 57, 389, 479, 541, 616, 823, 1037, 1187
Hpy188I TCNGA 2 cut(s) 179, 905
Hpy188III TCNNGA 9 cut(s) 50, 416, 485, 533, 689, 845, 883, 1147, 1254
Hpy8I GTNNAC 8 cut(s) 57, 389, 479, 541, 616, 823, 1037, 1187
Hpy99I CGWCG 2 cut(s) 738, 1196
HpyAV CCTTC 4 cut(s) 134, 304, 1016, 1100
HpyCH4III ACNGT 1 cut(s) 545
HpyCH4V TGCA 4 cut(s) 57, 295, 707, 1103
HpyF10VI GCNNNNNNNGC 1 cut(s) 739
HpyF3I CTNAG 5 cut(s) 51, 104, 167, 813, 1283
Hsp92II CATG 3 cut(s) 733, 1084, 1251
HspAI GCGC 2 cut(s) 12, 995
Kpn2I TCCGGA 1 cut(s) 882
Kzo9I GATC 4 cut(s) 400, 661, 767, 973
LmnI GCTCC 1 cut(s) 1256
Lsp1109I GCAGC 1 cut(s) 495
LweI GCATC 5 cut(s) 183, 694, 876, 1006, 1225
MaeI CTAG 2 cut(s) 845, 1133
MaeIII GTNAC 1 cut(s) 863
MalI GATC 4 cut(s) 402, 663, 769, 975
MboI GATC 4 cut(s) 400, 661, 767, 973
MboII GAAGA 9 cut(s) 192, 272, 300, 326, 363, 677, 704, 795, 918
MflI RGATCY 1 cut(s) 767
MhlI GDGCHC 4 cut(s) 59, 254, 468, 958
MlsI TGGCCA 1 cut(s) 1139
MluNI TGGCCA 1 cut(s) 1139
MlyI GAGTC 3 cut(s) 157, 920, 1182
MmeI TCCRAC 1 cut(s) 754
Mox20I TGGCCA 1 cut(s) 1139
Mph1103I ATGCAT 1 cut(s) 709
MroI TCCGGA 1 cut(s) 882
MscI TGGCCA 1 cut(s) 1139
MseI TTAA 5 cut(s) 459, 1028, 1050, 1203, 1212
MslI CAYNNNNRTG 2 cut(s) 712, 884
Msp20I TGGCCA 1 cut(s) 1139
MspI CCGG 2 cut(s) 762, 883
MspR9I CCNGG 3 cut(s) 93, 622, 763
MvaI CCWGG 2 cut(s) 93, 622
MwoI GCNNNNNNNGC 1 cut(s) 739
NciI CCSGG 1 cut(s) 763
NdeII GATC 4 cut(s) 400, 661, 767, 973
NlaIII CATG 3 cut(s) 733, 1084, 1251
NlaIV GGNNCC 2 cut(s) 956, 1258
NmuCI GTSAC 1 cut(s) 863
NsiI ATGCAT 1 cut(s) 709
NspI RCATGY 1 cut(s) 1251
NspV TTCGAA 1 cut(s) 258
PaeR7I CTCGAG 1 cut(s) 959
PaqCI CACCTGC 1 cut(s) 5
PciI ACATGT 1 cut(s) 1247
PcsI WCGNNNNNNNCGW 1 cut(s) 730
PfeI GAWTC 3 cut(s) 29, 78, 189
PkrI GCNGC 1 cut(s) 510
PleI GAGTC 3 cut(s) 157, 920, 1182
PpsI GAGTC 3 cut(s) 157, 920, 1182
PpuMI RGGWCCY 1 cut(s) 1109
PscI ACATGT 1 cut(s) 1247
PsiI TTATAA 1 cut(s) 1164
Psp124BI GAGCTC 1 cut(s) 468
Psp5II RGGWCCY 1 cut(s) 1109
Psp6I CCWGG 2 cut(s) 91, 620
PspGI CCWGG 2 cut(s) 91, 620
PspN4I GGNNCC 2 cut(s) 956, 1258
PspOMI GGGCCC 1 cut(s) 954
PspPI GGNCC 5 cut(s) 479, 555, 954, 955, 1109
PspPPI RGGWCCY 1 cut(s) 1109
PspXI VCTCGAGB 1 cut(s) 959
PsuI RGATCY 1 cut(s) 767
RsaI GTAC 6 cut(s) 135, 411, 433, 547, 760, 935
RsaNI GTAC 6 cut(s) 134, 410, 432, 546, 759, 934
RseI CAYNNNNRTG 2 cut(s) 712, 884
SacI GAGCTC 1 cut(s) 468
SaqAI TTAA 5 cut(s) 459, 1028, 1050, 1203, 1212
SatI GCNGC 1 cut(s) 509
Sau3AI GATC 4 cut(s) 400, 661, 767, 973
Sau96I GGNCC 5 cut(s) 479, 555, 954, 955, 1109
SchI GAGTC 3 cut(s) 157, 920, 1182
ScrFI CCNGG 3 cut(s) 93, 622, 763
SduI GDGCHC 4 cut(s) 59, 254, 468, 958
SfaNI GCATC 5 cut(s) 183, 694, 876, 1006, 1225
Sfr274I CTCGAG 1 cut(s) 959
SfuI TTCGAA 1 cut(s) 258
SinI GGWCC 2 cut(s) 479, 1109
SlaI CTCGAG 1 cut(s) 959
SmiMI CAYNNNNRTG 2 cut(s) 712, 884
SmlI CTYRAG 1 cut(s) 959
SmoI CTYRAG 1 cut(s) 959
SsiI CCGC 2 cut(s) 363, 1005
SspMI CTAG 2 cut(s) 845, 1133
SstI GAGCTC 1 cut(s) 468
StyD4I CCNGG 3 cut(s) 91, 620, 761
StyI CCWWGG 1 cut(s) 558
TaaI ACNGT 1 cut(s) 545
TaqI TCGA 6 cut(s) 258, 277, 590, 736, 960, 1191
TatI WGTACW 2 cut(s) 133, 409
TfiI GAWTC 3 cut(s) 29, 78, 189
Tru1I TTAA 5 cut(s) 459, 1028, 1050, 1203, 1212
Tru9I TTAA 5 cut(s) 459, 1028, 1050, 1203, 1212
TscAI CASTG 1 cut(s) 1147
TseFI GTSAC 1 cut(s) 863
TseI GCWGC 1 cut(s) 508
Tsp45I GTSAC 1 cut(s) 863
TspGWI ACGGA 1 cut(s) 743
TspRI CASTG 1 cut(s) 1147
VneI GTGCAC 1 cut(s) 55
VpaK11BI GGWCC 2 cut(s) 479, 1109
XapI RAATTY 6 cut(s) 221, 273, 424, 748, 911, 1266
XbaI TCTAGA 1 cut(s) 844
XceI RCATGY 1 cut(s) 1251
XhoI CTCGAG 1 cut(s) 959
XspI CTAG 2 cut(s) 845, 1133
Zsp2I ATGCAT 1 cut(s) 709
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.