Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0007138

Physical Location & Seq

Genomic Coordinates Reverse (-)

12796764 .. 12803002

Gene Structure 6239 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G205400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1296 bp

ATGTGGAGGGACGCTGGAACTCCTGCTGATTCGTTCTATGAAATCCGTCCTGAGTGTACTGATGTACCCAAAACCCGCTTCAAAATCAAGGCAGGCAAAACTTTAAGTGTAAGGAAATGGCAGGCTGCATTTTCTCCAGAAGGCCATCTGGATTTAGGCAAAACTTTAAGTCGAATCTATCGTGGGGGGATCCATCCATTAATTAGAGGAGAAGTTTGGGAATTTCTACTTGGTTGTTTTGATCCTAAGAGCACATTTGATGAAAGAGAGCAGATGCGGCAACGTCGAAGAGTGGAATATGCTAGGTGGAAGGAAGATTGCCGTCAAATGTTTCCTGTTGTTGGAAGTGGTAGGTTTATCACTGCCCCTGTAATCAGTGAAGACGGTCAGCCCATTCAGGATCCCTTAGTGCTTTCACAAATGAATCCAGACAAGGGAGCTGATGGTAACCGTGCTAATGGTATAGAACCGGTGACGGACAAGAAAGTAATCCAGTGGATGCTTACTCTACATCAAATAGGTCTTGATGTGGTTCGCACTGACAGGACACTGGTGTTTTATGAGAAGCAAGAACACTTATCAAAACTTTGGGATATTCTAGCTGTTTATGCCTGGATGGATACAGATGTGGGCTATTGTCAAGGAATGAGTGATCTTTGCTCCCCCATGATTATCCTTCTTGAAGATGAAGCAGATGCATTTTGGTGCTTTGAACGCTTGATGCGCAGACTGCGAGGAAATTTCAGATGTACCGATAGTTCTGTTGGGGTGGAGGCACAACTAAATAATCTAGCTTCAATTACTCAAGTCATTGATCCAAAACTTCATCAGCACTTAGAGACACTAGGTGGAGGCGACTATTTATTTGCTTTCCGGATGCTTATGGTTTTGTTCCGTCGAGAATTCTCCTTTTGTGATTCTTTATACCTTTGGGAGATGATGTGGGCTCTTGAATACGACCCTGACTTGTTCAGTGTGTACGAAGAGTCTGATACCGATAGTGAAAAGGCCGAAGGATCTAAGGGAAAAGCAAAGTCAATACGTCAGTGTGGGAAGTATGAGAGGGAAAATATGAAAAGTGGAGCAAACAATTCAGAAGCACCGCTCCCAATATCTGTTTTCCTAGTTGCCAGTGTCTTGAAAGATAAGAGCTCAAAGCTACTTACAGAAGCTCGGGGTCTGGATGATGTTGTTAAGATATTGAATGACATGACTGGAAATTTAGATGCCAAAAAAGCTTGCACTGGAGCAATGAAACTTCACAAAAAATATCTAAAAAAGGCCAAGAAGCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006886 GO:0008047 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0017016 GO:0017137 GO:0019899 GO:0030234 GO:0030695 GO:0031267 GO:0031338 GO:0032879 GO:0033036 GO:0033043 GO:0034613 GO:0042886 GO:0043085 GO:0043087 GO:0043547 GO:0044093 GO:0044424 GO:0044464 GO:0045184 GO:0046907 GO:0050789 GO:0050790 GO:0050794 GO:0051020 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0060589 GO:0060627 GO:0065007 GO:0065009 GO:0070727 GO:0071702 GO:0071705 GO:0090630 GO:0098772

KEGG Pathways

Metabolic & Signaling

ko04137 map04137

Pfam Domains

Protein Families

RabGAP-TBC

Protein Analysis

432

Amino Acids

49.29

Weight (kDa)

7.04

Isoelectric Point (pI)

38.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27100 AT4G27100 AT5G54780
fragaria_vesca	FvH4_3g21970 FvH4_3g21970 FvH4_3g21970 FvH4_3g21970 FvH4_3g21970 FvH4_3g21970
malus_domestica	MD03G1209800.v1.1 MD11G1224500.v1.1
prunus_persica	Prupe.4G205400_v2.0.a1 Prupe.4G205400_v2.0.a1
pyrus_communis	pycom03g15870 pycom11g19820
rosa_chinensis	RchiOBHm_Chr5g0037821
rosa_laevigata	RLG00000033813
rosa_multiflora	Rmu_sc0005416.1_g000010
rosa_roxburghii	Rroxscaffold_1G00043100
rosa_rugosa	Rorug05G0167900
rosa_samantha	Rh5AG256700 Rh5BG259100 Rh5CG292100 Rh5DG269000
rosa_wichuraiana	Rw5G023800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	725
AccBSI	CCGCTC	1 cut(s)	1105
AccIII	TCCGGA	1 cut(s)	873
AciI	CCGC	3 cut(s)	76, 277, 1103
AclWI	GGATC	7 cut(s)	184, 197, 236, 395, 408, 809, 1024
AcsI	RAATTY	4 cut(s)	221, 739, 902, 1219
AdeI	CACNNNGTG	1 cut(s)	848
AfaI	GTAC	4 cut(s)	58, 66, 751, 980
AfiI	CCNNNNNNNGG	2 cut(s)	341, 434
AgeI	ACCGGT	1 cut(s)	469
AgsI	TTSAA	7 cut(s)	82, 683, 713, 798, 953, 1141, 1204
AjnI	CCWGG	1 cut(s)	611
AjuI	GAANNNNNNNTTGG	4 cut(s)	62, 94, 213, 245
AluBI	AGCT	7 cut(s)	440, 602, 794, 1152, 1159, 1172, 1238
AluI	AGCT	7 cut(s)	440, 602, 794, 1152, 1159, 1172, 1238
Alw21I	GWGCWC	2 cut(s)	254, 1154
Alw26I	GTCTC	1 cut(s)	833
AlwI	GGATC	7 cut(s)	184, 197, 236, 395, 408, 809, 1024
Ama87I	CYCGRG	1 cut(s)	1173
Aor13HI	TCCGGA	1 cut(s)	873
AoxI	GGCC	3 cut(s)	142, 1008, 1281
ApeKI	GCWGC	1 cut(s)	125
ApoI	RAATTY	4 cut(s)	221, 739, 902, 1219
ArsI	GACNNNNNNTTYG	2 cut(s)	848, 880
AseI	ATTAAT	1 cut(s)	200
AsiGI	ACCGGT	1 cut(s)	469
AspLEI	GCGC	1 cut(s)	726
AsuHPI	GGTGA	1 cut(s)	484
AvaI	CYCGRG	1 cut(s)	1173
BaeI	ACNNNNGTAYC	4 cut(s)	48, 81, 612, 645
BamHI	GGATCC	2 cut(s)	189, 400
BanII	GRGCYC	2 cut(s)	949, 1154
BbsI	GAAGAC	1 cut(s)	387
Bbv12I	GWGCWC	2 cut(s)	254, 1154
BbvI	GCAGC	1 cut(s)	112
BccI	CCATC	4 cut(s)	153, 201, 437, 610
BceAI	ACGGC	1 cut(s)	306
BciT130I	CCWGG	1 cut(s)	613
BciVI	GTATCC	1 cut(s)	613
BcoDI	GTCTC	1 cut(s)	833
BfaI	CTAG	5 cut(s)	303, 599, 791, 845, 1124
BfuI	GTATCC	1 cut(s)	613
BisI	GCNGC	2 cut(s)	126, 278
BlsI	GCNGC	2 cut(s)	127, 279
Bme1390I	CCNGG	1 cut(s)	613
BmeT110I	CYCGRG	1 cut(s)	1173
BmiI	GGNNCC	2 cut(s)	191, 402
BmrFI	CCNGG	1 cut(s)	613
BmsI	GCATC	6 cut(s)	264, 489, 685, 711, 867, 1216
BpiI	GAAGAC	1 cut(s)	387
BpmI	CTGGAG	2 cut(s)	120, 1266
BpuEI	CTTGAG	1 cut(s)	789
BsaWI	WCCGGW	2 cut(s)	469, 873
BsaXI	ACNNNNNCTCC	2 cut(s)	926, 956
Bsc4I	CCNNNNNNNGG	2 cut(s)	341, 434
Bse118I	RCCGGY	1 cut(s)	469
Bse1I	ACTGG	5 cut(s)	493, 555, 1131, 1219, 1249
Bse3DI	GCAATG	1 cut(s)	1257
BseAI	TCCGGA	1 cut(s)	873
BseBI	CCWGG	1 cut(s)	613
BseGI	GGATG	5 cut(s)	193, 504, 621, 882, 1189
BseLI	CCNNNNNNNGG	2 cut(s)	341, 434
BseMI	GCAATG	1 cut(s)	1257
BseMII	CTCAG	1 cut(s)	42
BseNI	ACTGG	5 cut(s)	493, 555, 1131, 1219, 1249
BseRI	GAGGAG	1 cut(s)	222
BseXI	GCAGC	1 cut(s)	112
BshFI	GGCC	3 cut(s)	144, 1010, 1283
BshTI	ACCGGT	1 cut(s)	469
BsiHKAI	GWGCWC	2 cut(s)	254, 1154
BsiHKCI	CYCGRG	1 cut(s)	1173
BsiSI	CCGG	2 cut(s)	470, 874
BslFI	GGGAC	1 cut(s)	23
BslI	CCNNNNNNNGG	2 cut(s)	341, 434
BsmAI	GTCTC	1 cut(s)	833
BsmFI	GGGAC	1 cut(s)	23
BsnI	GGCC	3 cut(s)	144, 1010, 1283
BsoBI	CYCGRG	1 cut(s)	1173
Bsp1286I	GDGCHC	3 cut(s)	254, 949, 1154
Bsp13I	TCCGGA	1 cut(s)	873
Bsp143I	GATC	6 cut(s)	189, 241, 400, 652, 814, 1016
BspACI	CCGC	3 cut(s)	76, 277, 1103
BspANI	GGCC	3 cut(s)	144, 1010, 1283
BspCNI	CTCAG	1 cut(s)	43
BspEI	TCCGGA	1 cut(s)	873
BspLI	GGNNCC	2 cut(s)	191, 402
BspPI	GGATC	7 cut(s)	184, 197, 236, 395, 408, 809, 1024
BsrBI	CCGCTC	1 cut(s)	1105
BsrDI	GCAATG	1 cut(s)	1257
BsrFI	RCCGGY	1 cut(s)	469
BsrI	ACTGG	5 cut(s)	493, 555, 1131, 1219, 1249
BssAI	RCCGGY	1 cut(s)	469
BssMI	GATC	6 cut(s)	189, 241, 400, 652, 814, 1016
Bst2UI	CCWGG	1 cut(s)	613
Bst4CI	ACNGT	2 cut(s)	386, 452
Bst6I	CTCTTC	2 cut(s)	283, 978
BstC8I	GCNNGC	3 cut(s)	94, 123, 1240
BstDEI	CTNAG	5 cut(s)	51, 246, 406, 835, 1020
BstEII	GGTNACC	1 cut(s)	446
BstF5I	GGATG	5 cut(s)	193, 504, 621, 882, 1189
BstHHI	GCGC	1 cut(s)	726
BstKTI	GATC	6 cut(s)	192, 244, 403, 655, 817, 1019
BstMAI	GTCTC	1 cut(s)	833
BstMBI	GATC	6 cut(s)	189, 241, 400, 652, 814, 1016
BstMWI	GCNNNNNNNGC	6 cut(s)	277, 608, 714, 723, 730, 1235
BstNI	CCWGG	1 cut(s)	613
BstPI	GGTNACC	1 cut(s)	446
BstSCI	CCNGG	1 cut(s)	611
BstV1I	GCAGC	1 cut(s)	112
BstV2I	GAAGAC	1 cut(s)	387
BstX2I	RGATCY	3 cut(s)	189, 400, 1016
BstYI	RGATCY	3 cut(s)	189, 400, 1016
BsuI	GTATCC	1 cut(s)	613
BsuRI	GGCC	3 cut(s)	144, 1010, 1283
BtsCI	GGATG	5 cut(s)	193, 504, 621, 882, 1189
BtsI	GCAGTG	1 cut(s)	360
BtsIMutI	CAGTG	9 cut(s)	360, 382, 500, 537, 548, 979, 1052, 1138, 1242
Cac8I	GCNNGC	3 cut(s)	94, 123, 1240
CfoI	GCGC	1 cut(s)	726
Cfr10I	RCCGGY	1 cut(s)	469
CseI	GACGC	1 cut(s)	20
Csp6I	GTAC	4 cut(s)	57, 65, 750, 979
CspAI	ACCGGT	1 cut(s)	469
CviAII	CATG	2 cut(s)	667, 1210
CviQI	GTAC	4 cut(s)	57, 65, 750, 979
DdeI	CTNAG	5 cut(s)	51, 246, 406, 835, 1020
DpnI	GATC	6 cut(s)	191, 243, 402, 654, 816, 1018
DpnII	GATC	6 cut(s)	189, 241, 400, 652, 814, 1016
DraIII	CACNNNGTG	1 cut(s)	848
Eam1104I	CTCTTC	2 cut(s)	283, 978
EarI	CTCTTC	2 cut(s)	283, 978
Ecl136II	GAGCTC	1 cut(s)	1152
Eco24I	GRGCYC	2 cut(s)	949, 1154
Eco53kI	GAGCTC	1 cut(s)	1152
Eco88I	CYCGRG	1 cut(s)	1173
Eco91I	GGTNACC	1 cut(s)	446
EcoICRI	GAGCTC	1 cut(s)	1152
EcoO65I	GGTNACC	1 cut(s)	446
EcoRI	GAATTC	1 cut(s)	902
EcoRII	CCWGG	1 cut(s)	611
EcoT22I	ATGCAT	1 cut(s)	700
EcoT38I	GRGCYC	2 cut(s)	949, 1154
FaeI	CATG	2 cut(s)	670, 1213
FaqI	GGGAC	1 cut(s)	23
FatI	CATG	2 cut(s)	666, 1209
FauI	CCCGC	1 cut(s)	83
Fnu4HI	GCNGC	2 cut(s)	126, 278
FokI	GGATG	5 cut(s)	180, 511, 628, 889, 1196
FriOI	GRGCYC	2 cut(s)	949, 1154
Fsp4HI	GCNGC	2 cut(s)	126, 278
FspBI	CTAG	5 cut(s)	303, 599, 791, 845, 1124
FspI	TGCGCA	1 cut(s)	725
GlaI	GCGC	1 cut(s)	725
GluI	GCNGC	2 cut(s)	126, 278
GsuI	CTGGAG	2 cut(s)	120, 1266
HaeIII	GGCC	3 cut(s)	144, 1010, 1283
HapII	CCGG	2 cut(s)	470, 874
HgaI	GACGC	1 cut(s)	20
HhaI	GCGC	1 cut(s)	726
Hin1II	CATG	2 cut(s)	670, 1213
Hin6I	GCGC	1 cut(s)	724
HinP1I	GCGC	1 cut(s)	724
HindIII	AAGCTT	1 cut(s)	1236
HinfI	GANTC	5 cut(s)	29, 174, 424, 917, 986
HpaII	CCGG	2 cut(s)	470, 874
HphI	GGTGA	1 cut(s)	484
Hpy166II	GTNNAC	2 cut(s)	57, 979
Hpy188I	TCNGA	3 cut(s)	746, 991, 1096
Hpy8I	GTNNAC	2 cut(s)	57, 979
Hpy99I	CGWCG	2 cut(s)	288, 900
HpyAV	CCTTC	4 cut(s)	134, 304, 686, 1007
HpyCH4III	ACNGT	2 cut(s)	386, 452
HpyCH4IV	ACGT	2 cut(s)	283, 1042
HpyCH4V	TGCA	3 cut(s)	128, 698, 1242
HpyF10VI	GCNNNNNNNGC	6 cut(s)	277, 608, 714, 723, 730, 1235
HpyF3I	CTNAG	5 cut(s)	51, 246, 406, 835, 1020
HpySE526I	ACGT	2 cut(s)	283, 1042
Hsp92II	CATG	2 cut(s)	670, 1213
HspAI	GCGC	1 cut(s)	724
Kpn2I	TCCGGA	1 cut(s)	873
Kzo9I	GATC	6 cut(s)	189, 241, 400, 652, 814, 1016
LmnI	GCTCC	5 cut(s)	437, 665, 1082, 1110, 1247
Lsp1109I	GCAGC	1 cut(s)	112
LweI	GCATC	6 cut(s)	264, 489, 685, 711, 867, 1216
MaeI	CTAG	5 cut(s)	303, 599, 791, 845, 1124
MaeII	ACGT	2 cut(s)	283, 1042
MaeIII	GTNAC	2 cut(s)	446, 472
MalI	GATC	6 cut(s)	191, 243, 402, 654, 816, 1018
MbiI	CCGCTC	1 cut(s)	1105
MboI	GATC	6 cut(s)	189, 241, 400, 652, 814, 1016
MboII	GAAGA	5 cut(s)	300, 326, 392, 695, 995
MflI	RGATCY	3 cut(s)	189, 400, 1016
MhlI	GDGCHC	3 cut(s)	254, 949, 1154
MluCI	AATT	7 cut(s)	201, 221, 739, 798, 902, 1090, 1219
MlyI	GAGTC	1 cut(s)	995
MmeI	TCCRAC	1 cut(s)	322
MnlI	CCTC	5 cut(s)	200, 728, 766, 845, 1056
Mph1103I	ATGCAT	1 cut(s)	700
MroI	TCCGGA	1 cut(s)	873
MseI	TTAA	4 cut(s)	104, 167, 200, 1194
MslI	CAYNNNNRTG	1 cut(s)	703
MspI	CCGG	2 cut(s)	470, 874
MspR9I	CCNGG	1 cut(s)	613
MvaI	CCWGG	1 cut(s)	613
MwoI	GCNNNNNNNGC	6 cut(s)	277, 608, 714, 723, 730, 1235
NdeII	GATC	6 cut(s)	189, 241, 400, 652, 814, 1016
NlaIII	CATG	2 cut(s)	670, 1213
NlaIV	GGNNCC	2 cut(s)	191, 402
NmuCI	GTSAC	1 cut(s)	472
NsbI	TGCGCA	1 cut(s)	725
NsiI	ATGCAT	1 cut(s)	700
PcsI	WCGNNNNNNNCGW	1 cut(s)	178
PfeI	GAWTC	4 cut(s)	29, 174, 424, 917
PinAI	ACCGGT	1 cut(s)	469
PkrI	GCNGC	2 cut(s)	127, 279
PleI	GAGTC	1 cut(s)	994
PpsI	GAGTC	1 cut(s)	994
PshBI	ATTAAT	1 cut(s)	200
Psp124BI	GAGCTC	1 cut(s)	1154
Psp6I	CCWGG	1 cut(s)	611
PspEI	GGTNACC	1 cut(s)	446
PspGI	CCWGG	1 cut(s)	611
PspN4I	GGNNCC	2 cut(s)	191, 402
PsrI	GAACNNNNNNTAC	2 cut(s)	742, 774
PsuI	RGATCY	3 cut(s)	189, 400, 1016
RsaI	GTAC	4 cut(s)	58, 66, 751, 980
RsaNI	GTAC	4 cut(s)	57, 65, 750, 979
RseI	CAYNNNNRTG	1 cut(s)	703
SacI	GAGCTC	1 cut(s)	1154
SaqAI	TTAA	4 cut(s)	104, 167, 200, 1194
SatI	GCNGC	2 cut(s)	126, 278
Sau3AI	GATC	6 cut(s)	189, 241, 400, 652, 814, 1016
SchI	GAGTC	1 cut(s)	995
ScrFI	CCNGG	1 cut(s)	613
SduI	GDGCHC	3 cut(s)	254, 949, 1154
SfaNI	GCATC	6 cut(s)	264, 489, 685, 711, 867, 1216
SmiMI	CAYNNNNRTG	1 cut(s)	703
SmlI	CTYRAG	1 cut(s)	804
SmoI	CTYRAG	1 cut(s)	804
Sse9I	AATT	7 cut(s)	201, 221, 739, 798, 902, 1090, 1219
SsiI	CCGC	3 cut(s)	76, 277, 1103
SspMI	CTAG	5 cut(s)	303, 599, 791, 845, 1124
SstI	GAGCTC	1 cut(s)	1154
StyD4I	CCNGG	1 cut(s)	611
TaaI	ACNGT	2 cut(s)	386, 452
TaiI	ACGT	2 cut(s)	286, 1045
TaqI	TCGA	3 cut(s)	172, 286, 898
TasI	AATT	7 cut(s)	201, 221, 739, 798, 902, 1090, 1219
TatI	WGTACW	1 cut(s)	56
TauI	GCSGC	1 cut(s)	280
TfiI	GAWTC	4 cut(s)	29, 174, 424, 917
Tru1I	TTAA	4 cut(s)	104, 167, 200, 1194
Tru9I	TTAA	4 cut(s)	104, 167, 200, 1194
TscAI	CASTG	9 cut(s)	367, 382, 500, 544, 555, 979, 1052, 1138, 1249
TseFI	GTSAC	1 cut(s)	472
TseI	GCWGC	1 cut(s)	125
Tsp45I	GTSAC	1 cut(s)	472
TspDTI	ATGAA	7 cut(s)	54, 276, 437, 702, 815, 1088, 1268
TspGWI	ACGGA	3 cut(s)	35, 491, 884
TspRI	CASTG	9 cut(s)	367, 382, 500, 544, 555, 979, 1052, 1138, 1249
VspI	ATTAAT	1 cut(s)	200
XapI	RAATTY	4 cut(s)	221, 739, 902, 1219
XspI	CTAG	5 cut(s)	303, 599, 791, 845, 1124
Zsp2I	ATGCAT	1 cut(s)	700

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.