FvH4_3g21970

TBC1 domain family member

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Reverse (-)
15024272 .. 15031301
7030 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g21970.t2

Sequence Viewer

Length: 1338 bp
ATGTGGGGGAGCTCTGGAACTCCTGGGGATTCTTTCTATGAGGTCCGCTCTGAGTGCACAGATGTACCCAAAAGCCGGTTCAAGATCAAGGCAGGTAAAACTCTAAGTTCAAGGAAATGGCATGCTGCATTTTCTCCAGAAGGTCGTCTGGATATAGGCAAGACTTTGAGTCGAATCCATCGTGGGGGTATCCATCCATCAATTAGAGGAGAAGTTTGGGAATTTCTACTTGGTTGTTATGACCCGAAAAGCACATTTGAAGAAAGAGAGCAGCTCCGGCTACGTCGAAGGATAGAATATGCTAGGTGGAAGGAAGATTGCCGCCAAATGTTTCCTGTTGTTGGAAGTGGTAGGTTCATTACTGCCCCTGTAATCACTGATGATGGCCAGCCCATTCAGGATCCAATAGTACTTATGCAAATAAATCCAGATAGGGGGCAGGCTTTATCTTCAGAGGAATACTTTAAAGCCAATGGTCATACCCTGAATCCTGCTAGTGCTTTGGAACCAGTCAAGGATAAGAAAATAATCCAGTGGCTGCTTACGTTACATCAAATAGGGCTTGACGTGGTTCGGACTGACAGGACGCTAGTGTTTTACGAGAAGCAAGAAAACTTATCAAAACTTTGGGATATTCTAGCTGTTTATGCTTGGATAGATACAGATGTTGGCTACTGTCAAGGAATGAGTGATCTTTGCTCCCCCATGATTATCCTTCTCGATGATGAAGCTGATGCATTTTGGTGTTTTGAACGTTTGATGCGCAGACTGCGAGGAAATTTCAGATGTACTGATAACTCTGTCGGGGTGGAGGCACAACTAAGTAATTTGGCGGCAATCACTCAAGTCATTGATCCAAAACTTCATCAGCACTTAGAGACACTAGGTGGAGGTGATTATTTATTCGCTTTTCGGATGCTTATGGTTTTGTTCCGTCGGGAATTCTCTTTTTGTGATTCATTATACCTTTGGGAGATGATGTGGGCTCTTGAGTATGACCCTGACTTGTACAGTGTATATGAAGATTCTGATACTGATGGTGAAAGGGCTGAGGGATCTGGATCTTCTAAAGGGAAATCAAAGTCGAAACGTCATTATGGGAAGTATGAGAGGGAAAATATGAAAGTGAAAGGTTCAGAAGCACCTCTCCCAATATCCATTTTCCTTGTTGCCAGTGTCTTAAAAGATAAGAGCTCAAAATTACTGACAGAAGCTCGGGGTCTCGATGATGTTGTTAAGATATTGAATGACATAACTGGAAATTTAGATGCCAAAAAAGCTTGCAGTGGGGCAATGAAACTTCACAAGAAATATCTTAAAAAGGCTCAGAAAACATAG

Protein Analysis

446

Amino Acids

50.73

Weight (kDa)

7.96

Isoelectric Point (pI)

40.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RabGAP-TBC PF00566 67 - 304 4.2e-37 Rab-GTPase-TBC domain
RabGap-TBC_2 PF23436 181 - 300 7.5e-10 RabGAP TBC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 764
Acc36I ACCTGC 1 cut(s) 83
AccBSI CCGCTC 1 cut(s) 48
AciI CCGC 3 cut(s) 46, 322, 833
AclI AACGTT 1 cut(s) 754
AclWI GGATC 5 cut(s) 395, 408, 848, 1063, 1069
AcoI YGGCCR 1 cut(s) 385
AcsI RAATTY 4 cut(s) 221, 778, 941, 1261
AcuI CTGAAG 1 cut(s) 435
AdeI CACNNNGTG 1 cut(s) 887
AfaI GTAC 4 cut(s) 66, 411, 790, 1010
AfiI CCNNNNNNNGG 4 cut(s) 75, 184, 341, 434
AgsI TTSAA 5 cut(s) 82, 111, 260, 752, 1246
AhdI GACNNNNNGTC 1 cut(s) 168
AjiI CACGTC 1 cut(s) 568
AjnI CCWGG 1 cut(s) 22
AjuI GAANNNNNNNTTGG 4 cut(s) 62, 94, 213, 245
AluBI AGCT 7 cut(s) 12, 274, 641, 731, 1194, 1214, 1280
AluI AGCT 7 cut(s) 12, 274, 641, 731, 1194, 1214, 1280
Alw21I GWGCWC 3 cut(s) 14, 59, 1196
Alw26I GTCTC 2 cut(s) 872, 1226
Alw44I GTGCAC 1 cut(s) 55
AlwI GGATC 5 cut(s) 395, 408, 848, 1063, 1069
AlwNI CAGNNNCTG 1 cut(s) 538
Ama87I CYCGRG 1 cut(s) 1215
AoxI GGCC 1 cut(s) 385
ApaLI GTGCAC 1 cut(s) 55
ApeKI GCWGC 3 cut(s) 125, 271, 538
ApoI RAATTY 4 cut(s) 221, 778, 941, 1261
AspLEI GCGC 1 cut(s) 765
AspS9I GGNCC 1 cut(s) 43
AsuHPI GGTGA 2 cut(s) 905, 1052
AvaI CYCGRG 1 cut(s) 1215
AvaII GGWCC 1 cut(s) 43
BaeGI GKGCMC 1 cut(s) 59
BaeI ACNNNNGTAYC 4 cut(s) 48, 81, 651, 684
BalI TGGCCA 1 cut(s) 387
BamHI GGATCC 1 cut(s) 400
BanII GRGCYC 3 cut(s) 14, 988, 1196
Bbv12I GWGCWC 3 cut(s) 14, 59, 1196
BbvCI CCTCAGC 1 cut(s) 1050
BbvI GCAGC 3 cut(s) 112, 283, 525
BccI CCATC 5 cut(s) 186, 201, 205, 377, 1031
BciT130I CCWGG 1 cut(s) 24
BciVI GTATCC 1 cut(s) 200
BcoDI GTCTC 2 cut(s) 872, 1226
BfaI CTAG 5 cut(s) 303, 495, 590, 638, 884
BfuAI ACCTGC 1 cut(s) 83
BfuI GTATCC 1 cut(s) 200
BisI GCNGC 5 cut(s) 126, 272, 322, 539, 834
BlsI GCNGC 5 cut(s) 127, 273, 323, 540, 835
BmcAI AGTACT 1 cut(s) 411
Bme1390I CCNGG 1 cut(s) 24
Bme18I GGWCC 1 cut(s) 43
BmeRI GACNNNNNGTC 1 cut(s) 168
BmeT110I CYCGRG 1 cut(s) 1215
BmgBI CACGTC 1 cut(s) 568
BmgT120I GGNCC 1 cut(s) 43
BmiI GGNNCC 2 cut(s) 402, 507
BmrFI CCNGG 1 cut(s) 24
BmsI GCATC 4 cut(s) 724, 750, 906, 1258
BplI GAGNNNNNCTC 4 cut(s) 32, 64, 258, 290
BpmI CTGGAG 1 cut(s) 120
Bpu10I CCTNAGC 1 cut(s) 1050
BpuEI CTTGAG 2 cut(s) 828, 1010
BsaBI GATNNNNATC 1 cut(s) 1060
BsaI GGTCTC 1 cut(s) 1226
BsaJI CCNNGG 1 cut(s) 23
BsaXI ACNNNNNCTCC 2 cut(s) 965, 995
Bsc4I CCNNNNNNNGG 4 cut(s) 75, 184, 341, 434
Bse118I RCCGGY 1 cut(s) 75
Bse1I ACTGG 4 cut(s) 509, 532, 1173, 1261
Bse3DI GCAATG 1 cut(s) 1299
Bse8I GATNNNNATC 1 cut(s) 1060
BseBI CCWGG 1 cut(s) 24
BseDI CCNNGG 1 cut(s) 23
BseGI GGATG 2 cut(s) 193, 921
BseJI GATNNNNATC 1 cut(s) 1060
BseLI CCNNNNNNNGG 4 cut(s) 75, 184, 341, 434
BseMI GCAATG 1 cut(s) 1299
BseMII CTCAG 2 cut(s) 42, 1041
BseNI ACTGG 4 cut(s) 509, 532, 1173, 1261
BseRI GAGGAG 1 cut(s) 222
BseSI GKGCMC 1 cut(s) 59
BseXI GCAGC 3 cut(s) 112, 283, 525
BshFI GGCC 1 cut(s) 387
BsiHKAI GWGCWC 3 cut(s) 14, 59, 1196
BsiHKCI CYCGRG 1 cut(s) 1215
BsiSI CCGG 2 cut(s) 76, 277
BslI CCNNNNNNNGG 4 cut(s) 75, 184, 341, 434
BsmAI GTCTC 2 cut(s) 872, 1226
BsnI GGCC 1 cut(s) 387
Bso31I GGTCTC 1 cut(s) 1226
BsoBI CYCGRG 1 cut(s) 1215
Bsp1286I GDGCHC 4 cut(s) 14, 59, 988, 1196
Bsp1407I TGTACA 1 cut(s) 1008
Bsp143I GATC 6 cut(s) 84, 400, 691, 853, 1055, 1061
BspACI CCGC 3 cut(s) 46, 322, 833
BspANI GGCC 1 cut(s) 387
BspCNI CTCAG 2 cut(s) 43, 1042
BspLI GGNNCC 2 cut(s) 402, 507
BspMI ACCTGC 1 cut(s) 83
BspPI GGATC 5 cut(s) 395, 408, 848, 1063, 1069
BspTNI GGTCTC 1 cut(s) 1226
BsrBI CCGCTC 1 cut(s) 48
BsrDI GCAATG 1 cut(s) 1299
BsrFI RCCGGY 1 cut(s) 75
BsrGI TGTACA 1 cut(s) 1008
BsrI ACTGG 4 cut(s) 509, 532, 1173, 1261
BssAI RCCGGY 1 cut(s) 75
BssECI CCNNGG 1 cut(s) 23
BssMI GATC 6 cut(s) 84, 400, 691, 853, 1055, 1061
Bst2UI CCWGG 1 cut(s) 24
Bst4CI ACNGT 2 cut(s) 677, 1013
BstAUI TGTACA 1 cut(s) 1008
BstC8I GCNNGC 4 cut(s) 123, 389, 441, 1282
BstDEI CTNAG 6 cut(s) 51, 104, 821, 874, 1050, 1326
BstF5I GGATG 2 cut(s) 193, 921
BstHHI GCGC 1 cut(s) 765
BstKTI GATC 6 cut(s) 87, 403, 694, 856, 1058, 1064
BstMAI GTCTC 2 cut(s) 872, 1226
BstMBI GATC 6 cut(s) 84, 400, 691, 853, 1055, 1061
BstMWI GCNNNNNNNGC 5 cut(s) 54, 277, 647, 769, 1277
BstNI CCWGG 1 cut(s) 24
BstNSI RCATGY 1 cut(s) 125
BstSCI CCNGG 1 cut(s) 22
BstSLI GKGCMC 1 cut(s) 59
BstV1I GCAGC 3 cut(s) 112, 283, 525
BstX2I RGATCY 3 cut(s) 400, 1055, 1061
BstYI RGATCY 3 cut(s) 400, 1055, 1061
BsuI GTATCC 1 cut(s) 200
BsuRI GGCC 1 cut(s) 387
BtrI CACGTC 1 cut(s) 568
BtsCI GGATG 2 cut(s) 193, 921
BtsI GCAGTG 1 cut(s) 1291
BtsIMutI CAGTG 5 cut(s) 375, 539, 1018, 1180, 1291
BveI ACCTGC 1 cut(s) 83
Cac8I GCNNGC 4 cut(s) 123, 389, 441, 1282
CaiI CAGNNNCTG 1 cut(s) 538
CfoI GCGC 1 cut(s) 765
Cfr10I RCCGGY 1 cut(s) 75
Cfr13I GGNCC 1 cut(s) 43
CseI GACGC 1 cut(s) 595
Csp6I GTAC 4 cut(s) 65, 410, 789, 1009
CviAII CATG 2 cut(s) 122, 706
CviQI GTAC 4 cut(s) 65, 410, 789, 1009
DdeI CTNAG 6 cut(s) 51, 104, 821, 874, 1050, 1326
DpnI GATC 6 cut(s) 86, 402, 693, 855, 1057, 1063
DpnII GATC 6 cut(s) 84, 400, 691, 853, 1055, 1061
DraI TTTAAA 1 cut(s) 466
DraIII CACNNNGTG 1 cut(s) 887
DriI GACNNNNNGTC 1 cut(s) 168
EaeI YGGCCR 1 cut(s) 385
Eam1105I GACNNNNNGTC 1 cut(s) 168
Ecl136II GAGCTC 2 cut(s) 12, 1194
Eco24I GRGCYC 3 cut(s) 14, 988, 1196
Eco31I GGTCTC 1 cut(s) 1226
Eco47I GGWCC 1 cut(s) 43
Eco53kI GAGCTC 2 cut(s) 12, 1194
Eco57I CTGAAG 1 cut(s) 435
Eco88I CYCGRG 1 cut(s) 1215
EcoICRI GAGCTC 2 cut(s) 12, 1194
EcoRI GAATTC 1 cut(s) 941
EcoRII CCWGG 1 cut(s) 22
EcoT22I ATGCAT 1 cut(s) 739
EcoT38I GRGCYC 3 cut(s) 14, 988, 1196
FaeI CATG 2 cut(s) 125, 709
FatI CATG 2 cut(s) 121, 705
Fnu4HI GCNGC 5 cut(s) 126, 272, 322, 539, 834
FokI GGATG 2 cut(s) 180, 928
FriOI GRGCYC 3 cut(s) 14, 988, 1196
Fsp4HI GCNGC 5 cut(s) 126, 272, 322, 539, 834
FspBI CTAG 5 cut(s) 303, 495, 590, 638, 884
FspI TGCGCA 1 cut(s) 764
GlaI GCGC 1 cut(s) 764
GluI GCNGC 5 cut(s) 126, 272, 322, 539, 834
GsuI CTGGAG 1 cut(s) 120
HaeIII GGCC 1 cut(s) 387
HapII CCGG 2 cut(s) 76, 277
HgaI GACGC 1 cut(s) 595
HhaI GCGC 1 cut(s) 765
Hin1II CATG 2 cut(s) 125, 709
Hin6I GCGC 1 cut(s) 763
HinP1I GCGC 1 cut(s) 763
HindIII AAGCTT 1 cut(s) 1278
HinfI GANTC 6 cut(s) 29, 169, 174, 487, 956, 1025
HpaII CCGG 2 cut(s) 76, 277
HphI GGTGA 2 cut(s) 905, 1052
Hpy166II GTNNAC 1 cut(s) 57
Hpy188I TCNGA 8 cut(s) 52, 454, 576, 785, 915, 1030, 1138, 1329
Hpy8I GTNNAC 1 cut(s) 57
Hpy99I CGWCG 2 cut(s) 288, 939
HpyAV CCTTC 4 cut(s) 134, 282, 304, 725
HpyCH4III ACNGT 2 cut(s) 677, 1013
HpyCH4IV ACGT 5 cut(s) 283, 545, 567, 754, 1090
HpyCH4V TGCA 5 cut(s) 57, 128, 418, 737, 1284
HpyF10VI GCNNNNNNNGC 5 cut(s) 54, 277, 647, 769, 1277
HpyF3I CTNAG 6 cut(s) 51, 104, 821, 874, 1050, 1326
HpySE526I ACGT 5 cut(s) 283, 545, 567, 754, 1090
Hsp92II CATG 2 cut(s) 125, 709
HspAI GCGC 1 cut(s) 763
Kzo9I GATC 6 cut(s) 84, 400, 691, 853, 1055, 1061
LmnI GCTCC 3 cut(s) 9, 279, 704
Lsp1109I GCAGC 3 cut(s) 112, 283, 525
LweI GCATC 4 cut(s) 724, 750, 906, 1258
MaeI CTAG 5 cut(s) 303, 495, 590, 638, 884
MaeII ACGT 5 cut(s) 283, 545, 567, 754, 1090
MaeIII GTNAC 1 cut(s) 546
MalI GATC 6 cut(s) 86, 402, 693, 855, 1057, 1063
MbiI CCGCTC 1 cut(s) 48
MboI GATC 6 cut(s) 84, 400, 691, 853, 1055, 1061
MboII GAAGA 5 cut(s) 272, 326, 441, 1034, 1056
MflI RGATCY 3 cut(s) 400, 1055, 1061
MhlI GDGCHC 4 cut(s) 14, 59, 988, 1196
MlsI TGGCCA 1 cut(s) 387
MluCI AATT 7 cut(s) 201, 221, 778, 826, 941, 1199, 1261
MluNI TGGCCA 1 cut(s) 387
MlyI GAGTC 1 cut(s) 178
MmeI TCCRAC 1 cut(s) 322
MnlI CCTC 9 cut(s) 34, 200, 448, 767, 805, 884, 1045, 1104, 1155
Mox20I TGGCCA 1 cut(s) 387
Mph1103I ATGCAT 1 cut(s) 739
MscI TGGCCA 1 cut(s) 387
MseI TTAA 4 cut(s) 465, 1181, 1236, 1317
MslI CAYNNNNRTG 1 cut(s) 742
Msp20I TGGCCA 1 cut(s) 387
MspI CCGG 2 cut(s) 76, 277
MspR9I CCNGG 1 cut(s) 24
MvaI CCWGG 1 cut(s) 24
MwoI GCNNNNNNNGC 5 cut(s) 54, 277, 647, 769, 1277
NdeII GATC 6 cut(s) 84, 400, 691, 853, 1055, 1061
NlaIII CATG 2 cut(s) 125, 709
NlaIV GGNNCC 2 cut(s) 402, 507
NsbI TGCGCA 1 cut(s) 764
NsiI ATGCAT 1 cut(s) 739
NspI RCATGY 1 cut(s) 125
PaeI GCATGC 1 cut(s) 125
PcsI WCGNNNNNNNCGW 1 cut(s) 178
PfeI GAWTC 5 cut(s) 29, 174, 487, 956, 1025
PkrI GCNGC 5 cut(s) 127, 273, 323, 540, 835
PleI GAGTC 1 cut(s) 177
PpsI GAGTC 1 cut(s) 177
Psp124BI GAGCTC 2 cut(s) 14, 1196
Psp1406I AACGTT 1 cut(s) 754
Psp6I CCWGG 1 cut(s) 22
PspGI CCWGG 1 cut(s) 22
PspN4I GGNNCC 2 cut(s) 402, 507
PspPI GGNCC 1 cut(s) 43
PstNI CAGNNNCTG 1 cut(s) 538
PsuI RGATCY 3 cut(s) 400, 1055, 1061
RsaI GTAC 4 cut(s) 66, 411, 790, 1010
RsaNI GTAC 4 cut(s) 65, 410, 789, 1009
RseI CAYNNNNRTG 1 cut(s) 742
SacI GAGCTC 2 cut(s) 14, 1196
SaqAI TTAA 4 cut(s) 465, 1181, 1236, 1317
SatI GCNGC 5 cut(s) 126, 272, 322, 539, 834
Sau3AI GATC 6 cut(s) 84, 400, 691, 853, 1055, 1061
Sau96I GGNCC 1 cut(s) 43
ScaI AGTACT 1 cut(s) 411
SchI GAGTC 1 cut(s) 178
ScrFI CCNGG 1 cut(s) 24
SduI GDGCHC 4 cut(s) 14, 59, 988, 1196
SfaNI GCATC 4 cut(s) 724, 750, 906, 1258
SinI GGWCC 1 cut(s) 43
SmiMI CAYNNNNRTG 1 cut(s) 742
SmlI CTYRAG 2 cut(s) 843, 989
SmoI CTYRAG 2 cut(s) 843, 989
SphI GCATGC 1 cut(s) 125
Sse9I AATT 7 cut(s) 201, 221, 778, 826, 941, 1199, 1261
SsiI CCGC 3 cut(s) 46, 322, 833
SspMI CTAG 5 cut(s) 303, 495, 590, 638, 884
SstI GAGCTC 2 cut(s) 14, 1196
StyD4I CCNGG 1 cut(s) 22
TaaI ACNGT 2 cut(s) 677, 1013
TaiI ACGT 5 cut(s) 286, 548, 570, 757, 1093
TaqI TCGA 5 cut(s) 172, 286, 720, 1085, 1224
TasI AATT 7 cut(s) 201, 221, 778, 826, 941, 1199, 1261
TatI WGTACW 3 cut(s) 409, 788, 1008
TauI GCSGC 2 cut(s) 324, 836
TfiI GAWTC 5 cut(s) 29, 174, 487, 956, 1025
Tru1I TTAA 4 cut(s) 465, 1181, 1236, 1317
Tru9I TTAA 4 cut(s) 465, 1181, 1236, 1317
TscAI CASTG 5 cut(s) 382, 539, 1018, 1180, 1291
TseI GCWGC 3 cut(s) 125, 271, 538
TspDTI ATGAA 7 cut(s) 346, 741, 854, 948, 1035, 1136, 1310
TspGWI ACGGA 1 cut(s) 923
TspRI CASTG 5 cut(s) 382, 539, 1018, 1180, 1291
VneI GTGCAC 1 cut(s) 55
VpaK11BI GGWCC 1 cut(s) 43
XapI RAATTY 4 cut(s) 221, 778, 941, 1261
XceI RCATGY 1 cut(s) 125
XspI CTAG 5 cut(s) 303, 495, 590, 638, 884
ZrmI AGTACT 1 cut(s) 411
Zsp2I ATGCAT 1 cut(s) 739
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.