RLG00000033813

TBC1 domain family member

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Reverse (-)
32508464 .. 32516363
7900 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033813

Sequence Viewer

Length: 1557 bp
ATGTTGCTCGATGAGGCCAAAGAGATGGCGGAGGCGTCCAGGAGGCTATCGGCGACGCGTCAGCTCGATGGCGGTTGGACTGATGAGACTGAACTTGTACTAGCTCACTGGCGAGCTGCAAAGGAATCTGGGCAAGAACTCGATGTTGCGCCGGAGGGCCTCAAAGGGTTTTGGAAAACAAGAAAAAAGATAGTAACTTTGAGGCATTGGATTATTGGAATGTGGGGGAGCTCTGGAACTCCTGCTGATTCTTTCTATGAGGTCCGCCCTGAGTGTACTGATGTACCCAAAACCCGGTTCAAGATCAAGGCAGGTAAGACTCTAAGTTCAAGGAAATGGCAGGCCGCATTTTCTCCAGAAGGTTATCTGGATATAGGCAAGACTTTGAGTCGAATCCATCGCGGGGGTATCCATCCATCAATTAGAGGAGAAGTTTGGGAATTTCTACTTGGTTGTTATCACCCGAATAGCACATTTGAAGAAAGAGAGCAGCTCCGGCAACGTCGAAGGATAGACTATGCTAGGTGGAAGGAAGATTGCCGCCAAATGTTTCCTGTTGTTGGAAGTGGTAGGTTCATCACTGCCCCTGTAATCACTGATGATGGCCAGCCCATTCAGGATCCAATAGTACTTATGCAAATAAATCCAGATAAGGGCCAGGCTTTATCTTCACAGGAAAATGGTAAAGCCAATGGTAATACCACGAATCCTGCTGGTGCTTTGGAACCAGTGAAGGATAAGAAAACAATCCAGTGGCTGCGTACTTTGCATCAAATAGGGCTTGACGTAATTCGCACTGACAGGACGCTAGTGTTTTACGAGAAGCAAGAAAACTTATCAAAACTTTGGGATATTCTGGCTGTTTATGCCTGGATAGATACAGATGTCGGCTACTGTCAAGGAATGAGTGATCTTTGCTCCCCCATGATTATCCTTCTTGATGACGAAGCAGATGCATTTTGGTGTTTTGAACGTTTGATGCGCAGACTGCGAGGAAATTTCAGATGTACCGATAACTCTGTTGGGGTGGAGGCACAACTAAATAATTTGGCTGCAATCACTCAAGTCATTGATCCGAAACTTCATCAGCACTTAGAGACGCTAGGTGGAGGAGATTATTTATTCGCTTTTCGGATGCTTATGGTTTTGTTTCGTCGGGAATTTTCTTTTTGTGATTCTTTATACCTTTGGGAGATGATGTGGGCTCTTGAGTATGACCCTGACTTGTACGGTGTGTATGAAGATTCTGATACTGATAATGAAAGGGCCGAGGGATCTGGATCTTCTAAAGGGAAAGCAAAGTCAAAACGTCATTGTGGGAAGTATGAGAGGGAAAATATGAAAGTAAAAGGTTCAGAAGCACCGCTCCCAATATCCGTTTTCCTTGTTGCCAGTGTCTTAAAAGATAAGAGCTCAAAACTACTGACAGAAGCTCGGGGTCTCGATGATGTTGTTAAGATATTGAATGACATAACTGGAAATTTAGATGCCAAAAAAGCTTGCAGTGGGGCAATGAAACTTCACAAGAAATATCTGAGAAAGGCTAAGAAAACATAG

Protein Analysis

519

Amino Acids

58.89

Weight (kDa)

8.36

Isoelectric Point (pI)

37.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RabGAP-TBC PF00566 245 - 402 3.6e-36 Rab-GTPase-TBC domain
RabGap-TBC_2 PF23436 281 - 400 9.8e-10 RabGAP TBC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 983
Acc36I ACCTGC 1 cut(s) 302
AccBSI CCGCTC 1 cut(s) 1366
AccII CGCG 2 cut(s) 58, 402
AciI CCGC 7 cut(s) 29, 72, 265, 345, 402, 541, 1364
AclI AACGTT 1 cut(s) 973
AclWI GGATC 5 cut(s) 614, 627, 1067, 1282, 1288
AcoI YGGCCR 1 cut(s) 604
AcsI RAATTY 4 cut(s) 440, 997, 1160, 1480
AcyI GRCGYC 1 cut(s) 35
AfaI GTAC 7 cut(s) 99, 277, 285, 630, 763, 1009, 1229
AfiI CCNNNNNNNGG 4 cut(s) 294, 403, 560, 653
AflIII ACRYGT 1 cut(s) 56
AgsI TTSAA 5 cut(s) 301, 330, 479, 971, 1465
AhdI GACNNNNNGTC 1 cut(s) 387
AjnI CCWGG 3 cut(s) 38, 657, 869
AjuI GAANNNNNNNTTGG 4 cut(s) 281, 313, 432, 464
AluBI AGCT 8 cut(s) 64, 104, 116, 231, 493, 1413, 1433, 1499
AluI AGCT 8 cut(s) 64, 104, 116, 231, 493, 1413, 1433, 1499
Alw21I GWGCWC 2 cut(s) 233, 1415
Alw26I GTCTC 3 cut(s) 80, 1091, 1445
AlwI GGATC 5 cut(s) 614, 627, 1067, 1282, 1288
AlwNI CAGNNNCTG 1 cut(s) 757
Ama87I CYCGRG 1 cut(s) 1434
AoxI GGCC 6 cut(s) 15, 157, 342, 604, 655, 1266
ApeKI GCWGC 4 cut(s) 116, 490, 757, 1052
ApoI RAATTY 4 cut(s) 440, 997, 1160, 1480
AspLEI GCGC 2 cut(s) 151, 984
AspS9I GGNCC 4 cut(s) 157, 262, 655, 1266
AsuC2I CCSGG 1 cut(s) 295
AsuHPI GGTGA 1 cut(s) 452
AvaI CYCGRG 1 cut(s) 1434
AvaII GGWCC 1 cut(s) 262
BaeI ACNNNNGTAYC 4 cut(s) 267, 300, 870, 903
BalI TGGCCA 1 cut(s) 606
BamHI GGATCC 1 cut(s) 619
BanII GRGCYC 3 cut(s) 233, 1207, 1415
Bbv12I GWGCWC 2 cut(s) 233, 1415
BbvI GCAGC 4 cut(s) 103, 502, 744, 1039
BccI CCATC 6 cut(s) 19, 62, 405, 420, 424, 596
BcgI CGANNNNNNTGC 2 cut(s) 935, 969
BciT130I CCWGG 3 cut(s) 40, 659, 871
BciVI GTATCC 1 cut(s) 419
BcnI CCSGG 1 cut(s) 295
BcoDI GTCTC 3 cut(s) 80, 1091, 1445
BfaI CTAG 4 cut(s) 101, 522, 809, 1103
BfuAI ACCTGC 1 cut(s) 302
BfuI GTATCC 1 cut(s) 419
BisI GCNGC 6 cut(s) 117, 345, 491, 541, 758, 1053
BlsI GCNGC 6 cut(s) 118, 346, 492, 542, 759, 1054
BmcAI AGTACT 1 cut(s) 630
Bme1390I CCNGG 4 cut(s) 40, 295, 659, 871
Bme18I GGWCC 1 cut(s) 262
BmeRI GACNNNNNGTC 1 cut(s) 387
BmeT110I CYCGRG 1 cut(s) 1434
BmgT120I GGNCC 4 cut(s) 157, 262, 655, 1266
BmiI GGNNCC 2 cut(s) 621, 726
BmrFI CCNGG 4 cut(s) 40, 295, 659, 871
BmsI GCATC 5 cut(s) 778, 943, 969, 1125, 1477
BplI GAGNNNNNCTC 2 cut(s) 477, 509
BpmI CTGGAG 1 cut(s) 339
BpuEI CTTGAG 2 cut(s) 1047, 1229
BpuMI CCSGG 1 cut(s) 295
BsaBI GATNNNNATC 1 cut(s) 1279
BsaHI GRCGYC 1 cut(s) 35
BsaI GGTCTC 1 cut(s) 1445
BsaJI CCNNGG 1 cut(s) 1269
BsaXI ACNNNNNCTCC 2 cut(s) 1184, 1214
Bsc4I CCNNNNNNNGG 4 cut(s) 294, 403, 560, 653
Bse1I ACTGG 5 cut(s) 113, 728, 751, 1392, 1480
Bse3DI GCAATG 1 cut(s) 1518
Bse8I GATNNNNATC 1 cut(s) 1279
BseBI CCWGG 3 cut(s) 40, 659, 871
BseDI CCNNGG 1 cut(s) 1269
BseGI GGATG 2 cut(s) 412, 1140
BseJI GATNNNNATC 1 cut(s) 1279
BseLI CCNNNNNNNGG 4 cut(s) 294, 403, 560, 653
BseMI GCAATG 1 cut(s) 1518
BseMII CTCAG 2 cut(s) 261, 1526
BseNI ACTGG 5 cut(s) 113, 728, 751, 1392, 1480
BseRI GAGGAG 2 cut(s) 441, 1125
BseXI GCAGC 4 cut(s) 103, 502, 744, 1039
Bsh1236I CGCG 2 cut(s) 58, 402
BshFI GGCC 6 cut(s) 17, 159, 344, 606, 657, 1268
BsiHKAI GWGCWC 2 cut(s) 233, 1415
BsiHKCI CYCGRG 1 cut(s) 1434
BsiSI CCGG 3 cut(s) 152, 295, 496
BslI CCNNNNNNNGG 4 cut(s) 294, 403, 560, 653
BsmAI GTCTC 3 cut(s) 80, 1091, 1445
BsmBI CGTCTC 1 cut(s) 1091
BsnI GGCC 6 cut(s) 17, 159, 344, 606, 657, 1268
Bso31I GGTCTC 1 cut(s) 1445
BsoBI CYCGRG 1 cut(s) 1434
Bsp1286I GDGCHC 3 cut(s) 233, 1207, 1415
Bsp143I GATC 6 cut(s) 303, 619, 910, 1072, 1274, 1280
BspACI CCGC 7 cut(s) 29, 72, 265, 345, 402, 541, 1364
BspANI GGCC 6 cut(s) 17, 159, 344, 606, 657, 1268
BspCNI CTCAG 2 cut(s) 262, 1527
BspFNI CGCG 2 cut(s) 58, 402
BspLI GGNNCC 2 cut(s) 621, 726
BspMI ACCTGC 1 cut(s) 302
BspPI GGATC 5 cut(s) 614, 627, 1067, 1282, 1288
BspTNI GGTCTC 1 cut(s) 1445
BsrBI CCGCTC 1 cut(s) 1366
BsrDI GCAATG 1 cut(s) 1518
BsrI ACTGG 5 cut(s) 113, 728, 751, 1392, 1480
BssECI CCNNGG 1 cut(s) 1269
BssMI GATC 6 cut(s) 303, 619, 910, 1072, 1274, 1280
BssNI GRCGYC 1 cut(s) 35
Bst2UI CCWGG 3 cut(s) 40, 659, 871
Bst4CI ACNGT 2 cut(s) 896, 1232
BstACI GRCGYC 1 cut(s) 35
BstC8I GCNNGC 4 cut(s) 114, 342, 608, 1501
BstDEI CTNAG 5 cut(s) 270, 323, 1093, 1535, 1545
BstF5I GGATG 2 cut(s) 412, 1140
BstFNI CGCG 2 cut(s) 58, 402
BstHHI GCGC 2 cut(s) 151, 984
BstKTI GATC 6 cut(s) 306, 622, 913, 1075, 1277, 1283
BstMAI GTCTC 3 cut(s) 80, 1091, 1445
BstMBI GATC 6 cut(s) 303, 619, 910, 1072, 1274, 1280
BstMWI GCNNNNNNNGC 5 cut(s) 496, 766, 866, 988, 1496
BstNI CCWGG 3 cut(s) 40, 659, 871
BstSCI CCNGG 4 cut(s) 38, 293, 657, 869
BstUI CGCG 2 cut(s) 58, 402
BstV1I GCAGC 4 cut(s) 103, 502, 744, 1039
BstX2I RGATCY 3 cut(s) 619, 1274, 1280
BstXI CCANNNNNNTGG 1 cut(s) 25
BstYI RGATCY 3 cut(s) 619, 1274, 1280
BsuI GTATCC 1 cut(s) 419
BsuRI GGCC 6 cut(s) 17, 159, 344, 606, 657, 1268
BtgZI GCGATG 1 cut(s) 383
BtsCI GGATG 2 cut(s) 412, 1140
BtsI GCAGTG 2 cut(s) 579, 1510
BtsIMutI CAGTG 8 cut(s) 106, 579, 594, 735, 758, 795, 1399, 1510
BveI ACCTGC 1 cut(s) 302
Cac8I GCNNGC 4 cut(s) 114, 342, 608, 1501
CaiI CAGNNNCTG 1 cut(s) 757
CfoI GCGC 2 cut(s) 151, 984
Cfr13I GGNCC 4 cut(s) 157, 262, 655, 1266
CseI GACGC 5 cut(s) 24, 47, 64, 814, 1108
Csp6I GTAC 7 cut(s) 98, 276, 284, 629, 762, 1008, 1228
CviAII CATG 1 cut(s) 925
CviQI GTAC 7 cut(s) 98, 276, 284, 629, 762, 1008, 1228
DdeI CTNAG 5 cut(s) 270, 323, 1093, 1535, 1545
DpnI GATC 6 cut(s) 305, 621, 912, 1074, 1276, 1282
DpnII GATC 6 cut(s) 303, 619, 910, 1072, 1274, 1280
DriI GACNNNNNGTC 1 cut(s) 387
EaeI YGGCCR 1 cut(s) 604
Eam1105I GACNNNNNGTC 1 cut(s) 387
EciI GGCGGA 2 cut(s) 44, 254
Ecl136II GAGCTC 2 cut(s) 231, 1413
Eco24I GRGCYC 3 cut(s) 233, 1207, 1415
Eco31I GGTCTC 1 cut(s) 1445
Eco47I GGWCC 1 cut(s) 262
Eco53kI GAGCTC 2 cut(s) 231, 1413
Eco88I CYCGRG 1 cut(s) 1434
EcoICRI GAGCTC 2 cut(s) 231, 1413
EcoO109I RGGNCCY 1 cut(s) 157
EcoRII CCWGG 3 cut(s) 38, 657, 869
EcoT22I ATGCAT 1 cut(s) 958
EcoT38I GRGCYC 3 cut(s) 233, 1207, 1415
Esp3I CGTCTC 1 cut(s) 1091
FaeI CATG 1 cut(s) 928
FatI CATG 1 cut(s) 924
FauI CCCGC 1 cut(s) 395
Fnu4HI GCNGC 6 cut(s) 117, 345, 491, 541, 758, 1053
FokI GGATG 2 cut(s) 399, 1147
FriOI GRGCYC 3 cut(s) 233, 1207, 1415
Fsp4HI GCNGC 6 cut(s) 117, 345, 491, 541, 758, 1053
FspBI CTAG 4 cut(s) 101, 522, 809, 1103
FspI TGCGCA 1 cut(s) 983
GlaI GCGC 2 cut(s) 150, 983
GluI GCNGC 6 cut(s) 117, 345, 491, 541, 758, 1053
GsuI CTGGAG 1 cut(s) 339
HaeIII GGCC 6 cut(s) 17, 159, 344, 606, 657, 1268
HapII CCGG 3 cut(s) 152, 295, 496
HgaI GACGC 5 cut(s) 24, 47, 64, 814, 1108
HhaI GCGC 2 cut(s) 151, 984
Hin1I GRCGYC 1 cut(s) 35
Hin1II CATG 1 cut(s) 928
Hin6I GCGC 2 cut(s) 149, 982
HinP1I GCGC 2 cut(s) 149, 982
HindIII AAGCTT 1 cut(s) 1497
HinfI GANTC 8 cut(s) 125, 248, 319, 388, 393, 706, 1175, 1244
HpaII CCGG 3 cut(s) 152, 295, 496
HphI GGTGA 1 cut(s) 452
Hpy166II GTNNAC 1 cut(s) 276
Hpy188I TCNGA 6 cut(s) 1004, 1077, 1134, 1249, 1357, 1536
Hpy8I GTNNAC 1 cut(s) 276
Hpy99I CGWCG 3 cut(s) 58, 507, 1158
HpyAV CCTTC 5 cut(s) 353, 501, 523, 727, 944
HpyCH4III ACNGT 2 cut(s) 896, 1232
HpyCH4IV ACGT 4 cut(s) 502, 786, 973, 1309
HpyCH4V TGCA 6 cut(s) 119, 637, 769, 956, 1055, 1503
HpyF10VI GCNNNNNNNGC 5 cut(s) 496, 766, 866, 988, 1496
HpyF3I CTNAG 5 cut(s) 270, 323, 1093, 1535, 1545
HpySE526I ACGT 4 cut(s) 502, 786, 973, 1309
Hsp92I GRCGYC 1 cut(s) 35
Hsp92II CATG 1 cut(s) 928
HspAI GCGC 2 cut(s) 149, 982
Kzo9I GATC 6 cut(s) 303, 619, 910, 1072, 1274, 1280
LmnI GCTCC 4 cut(s) 228, 498, 923, 1371
Lsp1109I GCAGC 4 cut(s) 103, 502, 744, 1039
LweI GCATC 5 cut(s) 778, 943, 969, 1125, 1477
MaeI CTAG 4 cut(s) 101, 522, 809, 1103
MaeII ACGT 4 cut(s) 502, 786, 973, 1309
MaeIII GTNAC 1 cut(s) 193
MalI GATC 6 cut(s) 305, 621, 912, 1074, 1276, 1282
MbiI CCGCTC 1 cut(s) 1366
MboI GATC 6 cut(s) 303, 619, 910, 1072, 1274, 1280
MboII GAAGA 5 cut(s) 491, 545, 660, 1253, 1275
MflI RGATCY 3 cut(s) 619, 1274, 1280
MhlI GDGCHC 3 cut(s) 233, 1207, 1415
MlsI TGGCCA 1 cut(s) 606
MluCI AATT 7 cut(s) 420, 440, 789, 997, 1045, 1160, 1480
MluI ACGCGT 1 cut(s) 56
MluNI TGGCCA 1 cut(s) 606
MlyI GAGTC 2 cut(s) 313, 397
MmeI TCCRAC 2 cut(s) 56, 541
Mox20I TGGCCA 1 cut(s) 606
Mph1103I ATGCAT 1 cut(s) 958
MscI TGGCCA 1 cut(s) 606
MseI TTAA 2 cut(s) 1400, 1455
MslI CAYNNNNRTG 1 cut(s) 961
Msp20I TGGCCA 1 cut(s) 606
MspI CCGG 3 cut(s) 152, 295, 496
MspR9I CCNGG 4 cut(s) 40, 295, 659, 871
MvaI CCWGG 3 cut(s) 40, 659, 871
MvnI CGCG 2 cut(s) 58, 402
MwoI GCNNNNNNNGC 5 cut(s) 496, 766, 866, 988, 1496
NciI CCSGG 1 cut(s) 295
NdeII GATC 6 cut(s) 303, 619, 910, 1072, 1274, 1280
NlaIII CATG 1 cut(s) 928
NlaIV GGNNCC 2 cut(s) 621, 726
NmeAIII GCCGAG 1 cut(s) 1294
NsbI TGCGCA 1 cut(s) 983
NsiI ATGCAT 1 cut(s) 958
PfeI GAWTC 6 cut(s) 125, 248, 393, 706, 1175, 1244
PfoI TCCNGGA 1 cut(s) 38
PkrI GCNGC 6 cut(s) 118, 346, 492, 542, 759, 1054
PleI GAGTC 2 cut(s) 313, 396
PpsI GAGTC 2 cut(s) 313, 396
Psp124BI GAGCTC 2 cut(s) 233, 1415
Psp1406I AACGTT 1 cut(s) 973
Psp6I CCWGG 3 cut(s) 38, 657, 869
PspGI CCWGG 3 cut(s) 38, 657, 869
PspN4I GGNNCC 2 cut(s) 621, 726
PspPI GGNCC 4 cut(s) 157, 262, 655, 1266
PstNI CAGNNNCTG 1 cut(s) 757
PsuI RGATCY 3 cut(s) 619, 1274, 1280
RsaI GTAC 7 cut(s) 99, 277, 285, 630, 763, 1009, 1229
RsaNI GTAC 7 cut(s) 98, 276, 284, 629, 762, 1008, 1228
RseI CAYNNNNRTG 1 cut(s) 961
SacI GAGCTC 2 cut(s) 233, 1415
SaqAI TTAA 2 cut(s) 1400, 1455
SatI GCNGC 6 cut(s) 117, 345, 491, 541, 758, 1053
Sau3AI GATC 6 cut(s) 303, 619, 910, 1072, 1274, 1280
Sau96I GGNCC 4 cut(s) 157, 262, 655, 1266
ScaI AGTACT 1 cut(s) 630
SchI GAGTC 2 cut(s) 313, 397
ScrFI CCNGG 4 cut(s) 40, 295, 659, 871
SduI GDGCHC 3 cut(s) 233, 1207, 1415
SfaNI GCATC 5 cut(s) 778, 943, 969, 1125, 1477
SinI GGWCC 1 cut(s) 262
SmiMI CAYNNNNRTG 1 cut(s) 961
SmlI CTYRAG 2 cut(s) 1062, 1208
SmoI CTYRAG 2 cut(s) 1062, 1208
Sse9I AATT 7 cut(s) 420, 440, 789, 997, 1045, 1160, 1480
SsiI CCGC 7 cut(s) 29, 72, 265, 345, 402, 541, 1364
SspMI CTAG 4 cut(s) 101, 522, 809, 1103
SstI GAGCTC 2 cut(s) 233, 1415
StyD4I CCNGG 4 cut(s) 38, 293, 657, 869
TaaI ACNGT 2 cut(s) 896, 1232
TaiI ACGT 4 cut(s) 505, 789, 976, 1312
TaqI TCGA 6 cut(s) 9, 66, 141, 391, 505, 1443
TasI AATT 7 cut(s) 420, 440, 789, 997, 1045, 1160, 1480
TatI WGTACW 3 cut(s) 97, 275, 628
TauI GCSGC 2 cut(s) 347, 543
TfiI GAWTC 6 cut(s) 125, 248, 393, 706, 1175, 1244
Tru1I TTAA 2 cut(s) 1400, 1455
Tru9I TTAA 2 cut(s) 1400, 1455
TscAI CASTG 8 cut(s) 113, 586, 601, 735, 758, 802, 1399, 1510
TseI GCWGC 4 cut(s) 116, 490, 757, 1052
TspDTI ATGAA 6 cut(s) 565, 1073, 1254, 1275, 1355, 1529
TspGWI ACGGA 1 cut(s) 1366
TspRI CASTG 8 cut(s) 113, 586, 601, 735, 758, 802, 1399, 1510
VpaK11BI GGWCC 1 cut(s) 262
XapI RAATTY 4 cut(s) 440, 997, 1160, 1480
XspI CTAG 4 cut(s) 101, 522, 809, 1103
ZrmI AGTACT 1 cut(s) 630
Zsp2I ATGCAT 1 cut(s) 958
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.