Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0007138

Physical Location & Seq

Genomic Coordinates Reverse (-)

32596582 .. 32604005

Gene Structure 7424 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG269000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGTTTCCTGTTGTTGGAAGTGGTAGGTTCATCACTGCCCCTGTAATCACTGATGATGGCCAGCCCATTCAGGATCCAATAGTACTTATGCAAATAAATCCAGATAAGGGACAGGCTTTATCTTCACAGGAAAATGGTAAAGCCAGTGGTAATACCATGAATCCTGCTAGTGCTATGGAACCAGTGAAGGATAAGAAAATAATCCAGTGGCTGCGTACTTTGCATCAAATAGGGCTTGACGTAATTCGCACTGACAGGACGCTAGTGTTTTACGAGAAGCAAGAAAACTTATCAAAACTTTGGGATATTCTAGCTGTTTATGCCTGGATAGATACAGATGTCGGCTACTGTCAAGGAATGAGTGATCTTTGCTCCCCCATGATTATCCTTCTTGATGATGAAGCAGATGCATTTTGGTGTTTTGAACGTTTGATGCGCAGACTGCGAGGAAATTTCAGATGTACCGATAACTCTGTTGGGGTGGAGGCACAACTAAATAATTTGGCTGCAATCACTCAAGTCATTGATCCGAAACTTCATCAGCACTTAGAGACGCTAGGTGGAGGAGATTATTTATTCGCTTTTCGGATGCTTATGGTTTTGTTTCGTCGGGAATTCTCTTTTTGTGATTCTTTATACCTTTGGGAGATGATGTGGGCTCTTGAGTATGACCCTGACTTGTACGGTGTGTATGAAGATTCTGATACTGATAATGAAAGGGCTGAGGGATCTGGATCTTCTAAAGGGAAAGCAAAGTCAAAACGTCATTGTGGGAAGTATGAGAGGGAAAATATGAAAGTAAAAGGTTCAGAAGAACCGCTCCCAATATCCGTTTTCCTTGTTGCCAGTGTCTTAAAAGATAAGAGCTCAAAACTACTGACTGAAGCTCGGGGTCTCGATGATGTTGTTAAGGTTAGATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006886 GO:0008047 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0017016 GO:0017137 GO:0019899 GO:0030234 GO:0030695 GO:0031267 GO:0031338 GO:0032879 GO:0033036 GO:0033043 GO:0034613 GO:0042886 GO:0043085 GO:0043087 GO:0043547 GO:0044093 GO:0044424 GO:0044464 GO:0045184 GO:0046907 GO:0050789 GO:0050790 GO:0050794 GO:0051020 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0060589 GO:0060627 GO:0065007 GO:0065009 GO:0070727 GO:0071702 GO:0071705 GO:0090630 GO:0098772

KEGG Pathways

Metabolic & Signaling

ko04137 map04137

Pfam Domains

Protein Families

RabGAP-TBC

Protein Analysis

307

Amino Acids

34.75

Weight (kDa)

5.11

Isoelectric Point (pI)

29.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RabGAP-TBC	PF00566	57 - 220	5e-37	Rab-GTPase-TBC domain
RabGap-TBC_2	PF23436	99 - 218	3.5e-10	RabGAP TBC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27100 AT4G27100 AT5G54780
fragaria_vesca	FvH4_3g21970 FvH4_3g21970 FvH4_3g21970 FvH4_3g21970 FvH4_3g21970 FvH4_3g21970
malus_domestica	MD03G1209800.v1.1 MD11G1224500.v1.1
prunus_persica	Prupe.4G205400_v2.0.a1 Prupe.4G205400_v2.0.a1
pyrus_communis	pycom03g15870 pycom11g19820
rosa_chinensis	RchiOBHm_Chr5g0037821
rosa_laevigata	RLG00000033813
rosa_multiflora	Rmu_sc0005416.1_g000010
rosa_roxburghii	Rroxscaffold_1G00043100
rosa_rugosa	Rorug05G0167900
rosa_samantha	Rh5AG256700 Rh5BG259100 Rh5CG292100 Rh5DG269000
rosa_wichuraiana	Rw5G023800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	437
AccBSI	CCGCTC	1 cut(s)	820
AciI	CCGC	1 cut(s)	818
AclI	AACGTT	1 cut(s)	427
AclWI	GGATC	5 cut(s)	68, 81, 521, 736, 742
AcoI	YGGCCR	1 cut(s)	58
AcsI	RAATTY	2 cut(s)	451, 614
AcuI	CTGAAG	1 cut(s)	903
AfaI	GTAC	4 cut(s)	84, 217, 463, 683
AfiI	CCNNNNNNNGG	2 cut(s)	14, 107
AgsI	TTSAA	1 cut(s)	425
AjnI	CCWGG	1 cut(s)	323
AluBI	AGCT	3 cut(s)	314, 867, 887
AluI	AGCT	3 cut(s)	314, 867, 887
Alw21I	GWGCWC	1 cut(s)	869
Alw26I	GTCTC	2 cut(s)	545, 899
AlwI	GGATC	5 cut(s)	68, 81, 521, 736, 742
AlwNI	CAGNNNCTG	1 cut(s)	211
Ama87I	CYCGRG	1 cut(s)	888
AoxI	GGCC	1 cut(s)	58
ApeKI	GCWGC	2 cut(s)	211, 506
ApoI	RAATTY	2 cut(s)	451, 614
AspLEI	GCGC	1 cut(s)	438
AvaI	CYCGRG	1 cut(s)	888
BaeI	ACNNNNGTAYC	2 cut(s)	324, 357
BalI	TGGCCA	1 cut(s)	60
BamHI	GGATCC	1 cut(s)	73
BanII	GRGCYC	2 cut(s)	661, 869
Bbv12I	GWGCWC	1 cut(s)	869
BbvCI	CCTCAGC	1 cut(s)	723
BbvI	GCAGC	2 cut(s)	198, 493
BccI	CCATC	1 cut(s)	50
BciT130I	CCWGG	1 cut(s)	325
BcoDI	GTCTC	2 cut(s)	545, 899
BfaI	CTAG	4 cut(s)	168, 263, 311, 557
BisI	GCNGC	2 cut(s)	212, 507
BlsI	GCNGC	2 cut(s)	213, 508
BmcAI	AGTACT	1 cut(s)	84
Bme1390I	CCNGG	1 cut(s)	325
BmeT110I	CYCGRG	1 cut(s)	888
BmiI	GGNNCC	2 cut(s)	75, 180
BmrFI	CCNGG	1 cut(s)	325
BmsI	GCATC	4 cut(s)	232, 397, 423, 579
Bpu10I	CCTNAGC	1 cut(s)	723
BpuEI	CTTGAG	2 cut(s)	501, 683
BsaBI	GATNNNNATC	1 cut(s)	733
BsaI	GGTCTC	1 cut(s)	899
BsaXI	ACNNNNNCTCC	2 cut(s)	638, 668
Bsc4I	CCNNNNNNNGG	2 cut(s)	14, 107
Bse1I	ACTGG	4 cut(s)	144, 182, 205, 846
Bse8I	GATNNNNATC	1 cut(s)	733
BseBI	CCWGG	1 cut(s)	325
BseGI	GGATG	1 cut(s)	594
BseJI	GATNNNNATC	1 cut(s)	733
BseLI	CCNNNNNNNGG	2 cut(s)	14, 107
BseMII	CTCAG	1 cut(s)	714
BseNI	ACTGG	4 cut(s)	144, 182, 205, 846
BseRI	GAGGAG	1 cut(s)	579
BseXI	GCAGC	2 cut(s)	198, 493
BshFI	GGCC	1 cut(s)	60
BsiHKAI	GWGCWC	1 cut(s)	869
BsiHKCI	CYCGRG	1 cut(s)	888
BslFI	GGGAC	1 cut(s)	123
BslI	CCNNNNNNNGG	2 cut(s)	14, 107
BsmAI	GTCTC	2 cut(s)	545, 899
BsmBI	CGTCTC	1 cut(s)	545
BsmFI	GGGAC	1 cut(s)	123
BsnI	GGCC	1 cut(s)	60
Bso31I	GGTCTC	1 cut(s)	899
BsoBI	CYCGRG	1 cut(s)	888
Bsp1286I	GDGCHC	2 cut(s)	661, 869
Bsp143I	GATC	5 cut(s)	73, 364, 526, 728, 734
BspACI	CCGC	1 cut(s)	818
BspANI	GGCC	1 cut(s)	60
BspCNI	CTCAG	1 cut(s)	715
BspLI	GGNNCC	2 cut(s)	75, 180
BspPI	GGATC	5 cut(s)	68, 81, 521, 736, 742
BspTNI	GGTCTC	1 cut(s)	899
BsrBI	CCGCTC	1 cut(s)	820
BsrI	ACTGG	4 cut(s)	144, 182, 205, 846
BssMI	GATC	5 cut(s)	73, 364, 526, 728, 734
Bst2UI	CCWGG	1 cut(s)	325
Bst4CI	ACNGT	2 cut(s)	350, 686
BstC8I	GCNNGC	1 cut(s)	62
BstDEI	CTNAG	2 cut(s)	547, 723
BstF5I	GGATG	1 cut(s)	594
BstHHI	GCGC	1 cut(s)	438
BstKTI	GATC	5 cut(s)	76, 367, 529, 731, 737
BstMAI	GTCTC	2 cut(s)	545, 899
BstMBI	GATC	5 cut(s)	73, 364, 526, 728, 734
BstMWI	GCNNNNNNNGC	3 cut(s)	220, 320, 442
BstNI	CCWGG	1 cut(s)	325
BstSCI	CCNGG	1 cut(s)	323
BstV1I	GCAGC	2 cut(s)	198, 493
BstX2I	RGATCY	3 cut(s)	73, 728, 734
BstYI	RGATCY	3 cut(s)	73, 728, 734
BsuRI	GGCC	1 cut(s)	60
BtsCI	GGATG	1 cut(s)	594
BtsI	GCAGTG	1 cut(s)	33
BtsIMutI	CAGTG	7 cut(s)	33, 48, 151, 189, 212, 249, 853
Cac8I	GCNNGC	1 cut(s)	62
CaiI	CAGNNNCTG	1 cut(s)	211
CfoI	GCGC	1 cut(s)	438
CseI	GACGC	2 cut(s)	268, 562
Csp6I	GTAC	4 cut(s)	83, 216, 462, 682
CviAII	CATG	2 cut(s)	157, 379
CviQI	GTAC	4 cut(s)	83, 216, 462, 682
DdeI	CTNAG	2 cut(s)	547, 723
DpnI	GATC	5 cut(s)	75, 366, 528, 730, 736
DpnII	GATC	5 cut(s)	73, 364, 526, 728, 734
EaeI	YGGCCR	1 cut(s)	58
Ecl136II	GAGCTC	1 cut(s)	867
Eco24I	GRGCYC	2 cut(s)	661, 869
Eco31I	GGTCTC	1 cut(s)	899
Eco53kI	GAGCTC	1 cut(s)	867
Eco57I	CTGAAG	1 cut(s)	903
Eco88I	CYCGRG	1 cut(s)	888
EcoICRI	GAGCTC	1 cut(s)	867
EcoRI	GAATTC	1 cut(s)	614
EcoRII	CCWGG	1 cut(s)	323
EcoT22I	ATGCAT	1 cut(s)	412
EcoT38I	GRGCYC	2 cut(s)	661, 869
Esp3I	CGTCTC	1 cut(s)	545
FaeI	CATG	2 cut(s)	160, 382
FaqI	GGGAC	1 cut(s)	123
FatI	CATG	2 cut(s)	156, 378
Fnu4HI	GCNGC	2 cut(s)	212, 507
FokI	GGATG	1 cut(s)	601
FriOI	GRGCYC	2 cut(s)	661, 869
Fsp4HI	GCNGC	2 cut(s)	212, 507
FspBI	CTAG	4 cut(s)	168, 263, 311, 557
FspI	TGCGCA	1 cut(s)	437
GlaI	GCGC	1 cut(s)	437
GluI	GCNGC	2 cut(s)	212, 507
HaeIII	GGCC	1 cut(s)	60
HgaI	GACGC	2 cut(s)	268, 562
HhaI	GCGC	1 cut(s)	438
Hin1II	CATG	2 cut(s)	160, 382
Hin6I	GCGC	1 cut(s)	436
HinP1I	GCGC	1 cut(s)	436
HinfI	GANTC	3 cut(s)	160, 629, 698
Hpy188I	TCNGA	5 cut(s)	458, 531, 588, 703, 811
Hpy188III	TCNNGA	7 cut(s)	71, 101, 392, 611, 662, 732, 896
Hpy99I	CGWCG	1 cut(s)	612
HpyAV	CCTTC	2 cut(s)	181, 398
HpyCH4III	ACNGT	2 cut(s)	350, 686
HpyCH4IV	ACGT	3 cut(s)	240, 427, 763
HpyCH4V	TGCA	4 cut(s)	91, 223, 410, 509
HpyF10VI	GCNNNNNNNGC	3 cut(s)	220, 320, 442
HpyF3I	CTNAG	2 cut(s)	547, 723
HpySE526I	ACGT	3 cut(s)	240, 427, 763
Hsp92II	CATG	2 cut(s)	160, 382
HspAI	GCGC	1 cut(s)	436
Kzo9I	GATC	5 cut(s)	73, 364, 526, 728, 734
LmnI	GCTCC	2 cut(s)	377, 825
Lsp1109I	GCAGC	2 cut(s)	198, 493
LweI	GCATC	4 cut(s)	232, 397, 423, 579
MaeI	CTAG	4 cut(s)	168, 263, 311, 557
MaeII	ACGT	3 cut(s)	240, 427, 763
MalI	GATC	5 cut(s)	75, 366, 528, 730, 736
MbiI	CCGCTC	1 cut(s)	820
MboI	GATC	5 cut(s)	73, 364, 526, 728, 734
MboII	GAAGA	4 cut(s)	114, 707, 729, 824
MflI	RGATCY	3 cut(s)	73, 728, 734
MhlI	GDGCHC	2 cut(s)	661, 869
MlsI	TGGCCA	1 cut(s)	60
MluCI	AATT	4 cut(s)	243, 451, 499, 614
MluNI	TGGCCA	1 cut(s)	60
MnlI	CCTC	5 cut(s)	440, 478, 557, 718, 777
Mox20I	TGGCCA	1 cut(s)	60
Mph1103I	ATGCAT	1 cut(s)	412
MscI	TGGCCA	1 cut(s)	60
MseI	TTAA	2 cut(s)	854, 909
MslI	CAYNNNNRTG	1 cut(s)	415
Msp20I	TGGCCA	1 cut(s)	60
MspR9I	CCNGG	1 cut(s)	325
MvaI	CCWGG	1 cut(s)	325
MwoI	GCNNNNNNNGC	3 cut(s)	220, 320, 442
NdeII	GATC	5 cut(s)	73, 364, 526, 728, 734
NlaIII	CATG	2 cut(s)	160, 382
NlaIV	GGNNCC	2 cut(s)	75, 180
NsbI	TGCGCA	1 cut(s)	437
NsiI	ATGCAT	1 cut(s)	412
PfeI	GAWTC	3 cut(s)	160, 629, 698
PkrI	GCNGC	2 cut(s)	213, 508
Psp124BI	GAGCTC	1 cut(s)	869
Psp1406I	AACGTT	1 cut(s)	427
Psp6I	CCWGG	1 cut(s)	323
PspGI	CCWGG	1 cut(s)	323
PspN4I	GGNNCC	2 cut(s)	75, 180
PstNI	CAGNNNCTG	1 cut(s)	211
PsuI	RGATCY	3 cut(s)	73, 728, 734
RsaI	GTAC	4 cut(s)	84, 217, 463, 683
RsaNI	GTAC	4 cut(s)	83, 216, 462, 682
RseI	CAYNNNNRTG	1 cut(s)	415
SacI	GAGCTC	1 cut(s)	869
SaqAI	TTAA	2 cut(s)	854, 909
SatI	GCNGC	2 cut(s)	212, 507
Sau3AI	GATC	5 cut(s)	73, 364, 526, 728, 734
ScaI	AGTACT	1 cut(s)	84
ScrFI	CCNGG	1 cut(s)	325
SduI	GDGCHC	2 cut(s)	661, 869
SfaNI	GCATC	4 cut(s)	232, 397, 423, 579
SmiMI	CAYNNNNRTG	1 cut(s)	415
SmlI	CTYRAG	2 cut(s)	516, 662
SmoI	CTYRAG	2 cut(s)	516, 662
Sse9I	AATT	4 cut(s)	243, 451, 499, 614
SsiI	CCGC	1 cut(s)	818
SspMI	CTAG	4 cut(s)	168, 263, 311, 557
SstI	GAGCTC	1 cut(s)	869
StyD4I	CCNGG	1 cut(s)	323
TaaI	ACNGT	2 cut(s)	350, 686
TaiI	ACGT	3 cut(s)	243, 430, 766
TaqI	TCGA	1 cut(s)	897
TasI	AATT	4 cut(s)	243, 451, 499, 614
TatI	WGTACW	1 cut(s)	82
TfiI	GAWTC	3 cut(s)	160, 629, 698
Tru1I	TTAA	2 cut(s)	854, 909
Tru9I	TTAA	2 cut(s)	854, 909
TscAI	CASTG	7 cut(s)	40, 55, 151, 189, 212, 256, 853
TseI	GCWGC	2 cut(s)	211, 506
TspDTI	ATGAA	7 cut(s)	19, 173, 414, 527, 708, 729, 809
TspGWI	ACGGA	1 cut(s)	820
TspRI	CASTG	7 cut(s)	40, 55, 151, 189, 212, 256, 853
XapI	RAATTY	2 cut(s)	451, 614
XspI	CTAG	4 cut(s)	168, 263, 311, 557
ZrmI	AGTACT	1 cut(s)	84
Zsp2I	ATGCAT	1 cut(s)	412

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.