Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007138

Physical Location & Seq

Genomic Coordinates Reverse (-)

22248369 .. 22252191

Gene Structure 3823 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G54780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1299 bp

ATGTGGGGAGCCGCCGCAGAACCAGCAGATTCTTATTACCTGATTCGTCCTGAGTGCACTGATGTCCCCAATACCAAATTCAAGATCAAACCTGGTAAAACTCTAAGTGTAAGAAAATGGCAAGCTGCATTTACAACAGAAGGATTCCTTGATATTGGCAAGACTCTAAGTCGAATCCAACGAGGGGGGATCCATCCATCAATTAGAGGAGAAGTCTGGGAATTCTTACTTGGTTGTTATGATCCAAAAAGCACATTTGAAGAAAGAGAGCAAATCCGACAACGTAGAAGATTGCAGTATGCTTCTTGGAAGGAGGAATGTAAACAAATGTTTCCCGTCATCGGAAGTGGTGGATTCATTACTGCACCTGTAATTACCAACAAGGGTGAACCCATTTACGATCCTATTGTACTACAAGAAACAAATTTAGGTGCAAATGGTTCAGATTTCTTCAAAGATCTTGCAAGCCGTGGACCTTTGGACCAGAAAGTTATTCAATGGCTGTTAACACTTCACCAAATAGGTCTTGATGTAAATCGCACAGATAGGACTTTGGTATTCTATGAGAAAAAGGAGAACTTGTCTAAGCTTTGGGACATTCTAGCTCTTTACGCATGGATAGACAATGATGTTGGTTATTGCCAAGGAATGAGTGATCTTTGTTCCCCTATGATTATGCTTCTTGAGGACGAAGCTGATGCTTTTTGGTGTTTCGAAAGATTGATGCGCCGATTGCGAGGGAATTTTCGTGACACGGGGAGATCAGTTGGAGTCGAAGCACAGCTTACTCATTTGGCTTCAATCACTCAGATTATTGACCCCAAACTTCACCATCACTTAGAGAAATTGGGTGGTGGTGACTATCTCTTTGCTATTCGAATGATAATGGTTCAGTTCCGAAGAGAATTCTCCTTTTGTGACTCCTTGTACCTTTGGGAGATGATGTGGGCATTAGAGTACGACCCTGAAATGTATTCTCTATATGAGGAGCCTCAATTCGAGGGAGAGAGAATCGAAGGTTCCTCCAAAGGTAAACCAAAGTCGATAAACCAATGCGGGAAGTACGAGAGAGAGAACATGAAGAATGGAGGGAAAAGCGCGGAAGGTCCTTTGCCTATCTCTGTTTTCTTAGTGGCTAGTGTTTTGAAAGACAAGAGTTCTAAGTTAATGACCGAAGCTCGAGGACTTGATGACGTTGTAAAGATCTTAAACGACATAACCGGAAACTTGGATGCTAAAAAAGCCTGTACTGGTGCAATGAAACTTCACAAGAAGTATCTTAAAAAGGCCAAGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006886 GO:0008047 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0017016 GO:0017137 GO:0019899 GO:0030234 GO:0030695 GO:0031267 GO:0031338 GO:0032879 GO:0033036 GO:0033043 GO:0034613 GO:0042886 GO:0043085 GO:0043087 GO:0043547 GO:0044093 GO:0044424 GO:0044464 GO:0045184 GO:0046907 GO:0050789 GO:0050790 GO:0050794 GO:0051020 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0060589 GO:0060627 GO:0065007 GO:0065009 GO:0070727 GO:0071702 GO:0071705 GO:0090630 GO:0098772

KEGG Pathways

Metabolic & Signaling

ko04137 map04137

Pfam Domains

Protein Families

RabGAP-TBC

Protein Analysis

432

Amino Acids

49.41

Weight (kDa)

8.22

Isoelectric Point (pI)

35.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RabGAP-TBC	PF00566	169 - 319	1.8e-35	Rab-GTPase-TBC domain
RabGap-TBC_2	PF23436	196 - 315	8.6e-08	RabGAP TBC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27100 AT4G27100 AT5G54780
fragaria_vesca	FvH4_3g21970 FvH4_3g21970 FvH4_3g21970 FvH4_3g21970 FvH4_3g21970 FvH4_3g21970
malus_domestica	MD03G1209800.v1.1 MD11G1224500.v1.1
prunus_persica	Prupe.4G205400_v2.0.a1 Prupe.4G205400_v2.0.a1
pyrus_communis	pycom03g15870 pycom11g19820
rosa_chinensis	RchiOBHm_Chr5g0037821
rosa_laevigata	RLG00000033813
rosa_multiflora	Rmu_sc0005416.1_g000010
rosa_roxburghii	Rroxscaffold_1G00043100
rosa_rugosa	Rorug05G0167900
rosa_samantha	Rh5AG256700 Rh5BG259100 Rh5CG292100 Rh5DG269000
rosa_wichuraiana	Rw5G023800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	1100
AciI	CCGC	4 cut(s)	12, 15, 1056, 1100
AclWI	GGATC	4 cut(s)	184, 197, 236, 395
AcsI	RAATTY	5 cut(s)	77, 221, 424, 742, 905
AfaI	GTAC	5 cut(s)	411, 929, 959, 1064, 1249
AfiI	CCNNNNNNNGG	2 cut(s)	184, 341
AgsI	TTSAA	6 cut(s)	82, 260, 454, 497, 801, 1147
AhdI	GACNNNNNGTC	1 cut(s)	168
AjnI	CCWGG	1 cut(s)	91
AjuI	GAANNNNNNNTTGG	4 cut(s)	62, 94, 213, 245
AluBI	AGCT	6 cut(s)	125, 589, 605, 695, 784, 1178
AluI	AGCT	6 cut(s)	125, 589, 605, 695, 784, 1178
Alw21I	GWGCWC	1 cut(s)	59
Alw44I	GTGCAC	1 cut(s)	55
AlwI	GGATC	4 cut(s)	184, 197, 236, 395
Ama87I	CYCGRG	1 cut(s)	1179
AoxI	GGCC	1 cut(s)	1287
ApaLI	GTGCAC	1 cut(s)	55
ApeKI	GCWGC	1 cut(s)	125
ApoI	RAATTY	5 cut(s)	77, 221, 424, 742, 905
ArsI	GACNNNNNNTTYG	2 cut(s)	851, 883
AspLEI	GCGC	2 cut(s)	729, 1100
AspS9I	GGNCC	3 cut(s)	473, 481, 1106
AsuHPI	GGTGA	4 cut(s)	398, 506, 821, 869
AsuII	TTCGAA	2 cut(s)	714, 877
AvaI	CYCGRG	1 cut(s)	1179
AvaII	GGWCC	3 cut(s)	473, 481, 1106
BaeGI	GKGCMC	1 cut(s)	59
BamHI	GGATCC	1 cut(s)	189
Bbv12I	GWGCWC	1 cut(s)	59
BbvI	GCAGC	1 cut(s)	112
BccI	CCATC	3 cut(s)	201, 205, 840
BceAI	ACGGC	1 cut(s)	453
BcgI	CGANNNNNNTGC	2 cut(s)	680, 714
BciT130I	CCWGG	1 cut(s)	93
BfaI	CTAG	2 cut(s)	602, 1137
BglII	AGATCT	2 cut(s)	457, 1203
BisI	GCNGC	3 cut(s)	12, 15, 126
BlsI	GCNGC	3 cut(s)	13, 16, 127
Bme1390I	CCNGG	1 cut(s)	93
Bme18I	GGWCC	3 cut(s)	473, 481, 1106
BmeRI	GACNNNNNGTC	1 cut(s)	168
BmeT110I	CYCGRG	1 cut(s)	1179
BmgT120I	GGNCC	3 cut(s)	473, 481, 1106
BmiI	GGNNCC	4 cut(s)	10, 191, 990, 1021
BmrFI	CCNGG	1 cut(s)	93
BmsI	GCATC	3 cut(s)	688, 714, 1222
Bpu14I	TTCGAA	2 cut(s)	714, 877
BpuEI	CTTGAG	1 cut(s)	704
BsaBI	GATNNNNATC	1 cut(s)	534
BsaJI	CCNNGG	2 cut(s)	469, 643
BsaWI	WCCGGW	1 cut(s)	1220
BsaXI	ACNNNNNCTCC	4 cut(s)	566, 596, 929, 959
Bsc4I	CCNNNNNNNGG	2 cut(s)	184, 341
Bse1I	ACTGG	1 cut(s)	1255
Bse3DI	GCAATG	1 cut(s)	1263
Bse8I	GATNNNNATC	1 cut(s)	534
BseBI	CCWGG	1 cut(s)	93
BseDI	CCNNGG	2 cut(s)	469, 643
BseGI	GGATG	2 cut(s)	193, 1237
BseJI	GATNNNNATC	1 cut(s)	534
BseLI	CCNNNNNNNGG	2 cut(s)	184, 341
BseMI	GCAATG	1 cut(s)	1263
BseMII	CTCAG	2 cut(s)	42, 821
BseNI	ACTGG	1 cut(s)	1255
BseRI	GAGGAG	2 cut(s)	222, 1001
BseSI	GKGCMC	1 cut(s)	59
BseXI	GCAGC	1 cut(s)	112
BsgI	GTGCAG	1 cut(s)	348
Bsh1236I	CGCG	1 cut(s)	1100
BshFI	GGCC	1 cut(s)	1289
BsiHKAI	GWGCWC	1 cut(s)	59
BsiHKCI	CYCGRG	1 cut(s)	1179
BsiSI	CCGG	1 cut(s)	1221
BslFI	GGGAC	2 cut(s)	50, 608
BslI	CCNNNNNNNGG	2 cut(s)	184, 341
BsmFI	GGGAC	2 cut(s)	50, 608
BsnI	GGCC	1 cut(s)	1289
BsoBI	CYCGRG	1 cut(s)	1179
Bsp119I	TTCGAA	2 cut(s)	714, 877
Bsp1286I	GDGCHC	1 cut(s)	59
Bsp143I	GATC	8 cut(s)	84, 189, 241, 400, 457, 655, 761, 1203
BspACI	CCGC	4 cut(s)	12, 15, 1056, 1100
BspANI	GGCC	1 cut(s)	1289
BspCNI	CTCAG	2 cut(s)	43, 820
BspFNI	CGCG	1 cut(s)	1100
BspLI	GGNNCC	4 cut(s)	10, 191, 990, 1021
BspPI	GGATC	4 cut(s)	184, 197, 236, 395
BspT104I	TTCGAA	2 cut(s)	714, 877
BsrDI	GCAATG	1 cut(s)	1263
BsrI	ACTGG	1 cut(s)	1255
BssECI	CCNNGG	2 cut(s)	469, 643
BssMI	GATC	8 cut(s)	84, 189, 241, 400, 457, 655, 761, 1203
BssT1I	CCWWGG	1 cut(s)	643
Bst2UI	CCWGG	1 cut(s)	93
Bst6I	CTCTTC	1 cut(s)	895
BstBI	TTCGAA	2 cut(s)	714, 877
BstC8I	GCNNGC	2 cut(s)	123, 466
BstDEI	CTNAG	8 cut(s)	51, 104, 167, 585, 807, 838, 1129, 1161
BstDSI	CCRYGG	1 cut(s)	469
BstF5I	GGATG	2 cut(s)	193, 1237
BstFNI	CGCG	1 cut(s)	1100
BstHHI	GCGC	2 cut(s)	729, 1100
BstKTI	GATC	8 cut(s)	87, 192, 244, 403, 460, 658, 764, 1206
BstMBI	GATC	8 cut(s)	84, 189, 241, 400, 457, 655, 761, 1203
BstMWI	GCNNNNNNNGC	4 cut(s)	23, 611, 733, 1241
BstNI	CCWGG	1 cut(s)	93
BstSCI	CCNGG	1 cut(s)	91
BstSLI	GKGCMC	1 cut(s)	59
BstUI	CGCG	1 cut(s)	1100
BstV1I	GCAGC	1 cut(s)	112
BstX2I	RGATCY	3 cut(s)	189, 457, 1203
BstYI	RGATCY	3 cut(s)	189, 457, 1203
BsuRI	GGCC	1 cut(s)	1289
BtgI	CCRYGG	1 cut(s)	469
BtsCI	GGATG	2 cut(s)	193, 1237
BtsIMutI	CAGTG	1 cut(s)	57
Cac8I	GCNNGC	2 cut(s)	123, 466
CfoI	GCGC	2 cut(s)	729, 1100
Cfr13I	GGNCC	3 cut(s)	473, 481, 1106
CsiI	ACCWGGT	1 cut(s)	91
Csp6I	GTAC	5 cut(s)	410, 928, 958, 1063, 1248
CviAII	CATG	2 cut(s)	615, 1078
CviQI	GTAC	5 cut(s)	410, 928, 958, 1063, 1248
DdeI	CTNAG	8 cut(s)	51, 104, 167, 585, 807, 838, 1129, 1161
DpnI	GATC	8 cut(s)	86, 191, 243, 402, 459, 657, 763, 1205
DpnII	GATC	8 cut(s)	84, 189, 241, 400, 457, 655, 761, 1203
DriI	GACNNNNNGTC	1 cut(s)	168
Eam1104I	CTCTTC	1 cut(s)	895
Eam1105I	GACNNNNNGTC	1 cut(s)	168
EarI	CTCTTC	1 cut(s)	895
Eco130I	CCWWGG	1 cut(s)	643
Eco47I	GGWCC	3 cut(s)	473, 481, 1106
Eco88I	CYCGRG	1 cut(s)	1179
EcoO109I	RGGNCCY	1 cut(s)	1106
EcoRI	GAATTC	2 cut(s)	221, 905
EcoRII	CCWGG	1 cut(s)	91
EcoT14I	CCWWGG	1 cut(s)	643
ErhI	CCWWGG	1 cut(s)	643
FaeI	CATG	2 cut(s)	618, 1081
FalI	AAGNNNNNCTT	6 cut(s)	132, 164, 563, 595, 768, 800
FaqI	GGGAC	2 cut(s)	50, 608
FatI	CATG	2 cut(s)	614, 1077
FauI	CCCGC	1 cut(s)	1049
Fnu4HI	GCNGC	3 cut(s)	12, 15, 126
FokI	GGATG	2 cut(s)	180, 1244
Fsp4HI	GCNGC	3 cut(s)	12, 15, 126
FspBI	CTAG	2 cut(s)	602, 1137
GlaI	GCGC	2 cut(s)	728, 1099
GluI	GCNGC	3 cut(s)	12, 15, 126
HaeIII	GGCC	1 cut(s)	1289
HapII	CCGG	1 cut(s)	1221
HhaI	GCGC	2 cut(s)	729, 1100
Hin1II	CATG	2 cut(s)	618, 1081
Hin6I	GCGC	2 cut(s)	727, 1098
HinP1I	GCGC	2 cut(s)	727, 1098
HincII	GTYRAC	1 cut(s)	507
HindII	GTYRAC	1 cut(s)	507
HindIII	AAGCTT	1 cut(s)	587
HinfI	GANTC	9 cut(s)	29, 43, 144, 163, 174, 354, 771, 920, 1011
HpaI	GTTAAC	1 cut(s)	507
HpaII	CCGG	1 cut(s)	1221
HphI	GGTGA	4 cut(s)	398, 506, 821, 869
Hpy166II	GTNNAC	6 cut(s)	57, 323, 389, 473, 507, 1034
Hpy188I	TCNGA	5 cut(s)	278, 344, 445, 810, 899
Hpy188III	TCNNGA	5 cut(s)	50, 82, 527, 683, 749
Hpy8I	GTNNAC	6 cut(s)	57, 323, 389, 473, 507, 1034
HpyAV	CCTTC	4 cut(s)	134, 304, 1010, 1097
HpyCH4IV	ACGT	2 cut(s)	283, 1194
HpyCH4V	TGCA	7 cut(s)	57, 128, 295, 365, 434, 464, 1256
HpyF10VI	GCNNNNNNNGC	4 cut(s)	23, 611, 733, 1241
HpyF3I	CTNAG	8 cut(s)	51, 104, 167, 585, 807, 838, 1129, 1161
HpySE526I	ACGT	2 cut(s)	283, 1194
Hsp92II	CATG	2 cut(s)	618, 1081
HspAI	GCGC	2 cut(s)	727, 1098
KspAI	GTTAAC	1 cut(s)	507
Kzo9I	GATC	8 cut(s)	84, 189, 241, 400, 457, 655, 761, 1203
LmnI	GCTCC	2 cut(s)	8, 988
Lsp1109I	GCAGC	1 cut(s)	112
LweI	GCATC	3 cut(s)	688, 714, 1222
MabI	ACCWGGT	1 cut(s)	91
MaeI	CTAG	2 cut(s)	602, 1137
MaeII	ACGT	2 cut(s)	283, 1194
MaeIII	GTNAC	3 cut(s)	749, 857, 917
MalI	GATC	8 cut(s)	86, 191, 243, 402, 459, 657, 763, 1205
MboI	GATC	8 cut(s)	84, 189, 241, 400, 457, 655, 761, 1203
MboII	GAAGA	5 cut(s)	272, 300, 442, 912, 1093
MflI	RGATCY	3 cut(s)	189, 457, 1203
MhlI	GDGCHC	1 cut(s)	59
MluCI	AATT	9 cut(s)	77, 201, 221, 372, 424, 742, 845, 905, 995
MlyI	GAGTC	3 cut(s)	157, 780, 914
MmeI	TCCRAC	3 cut(s)	202, 301, 748
MseI	TTAA	4 cut(s)	506, 1166, 1208, 1281
MspI	CCGG	1 cut(s)	1221
MspR9I	CCNGG	1 cut(s)	93
MvaI	CCWGG	1 cut(s)	93
MvnI	CGCG	1 cut(s)	1100
MwoI	GCNNNNNNNGC	4 cut(s)	23, 611, 733, 1241
NdeII	GATC	8 cut(s)	84, 189, 241, 400, 457, 655, 761, 1203
NlaIII	CATG	2 cut(s)	618, 1081
NlaIV	GGNNCC	4 cut(s)	10, 191, 990, 1021
NmuCI	GTSAC	3 cut(s)	749, 857, 917
NspV	TTCGAA	2 cut(s)	714, 877
PaeR7I	CTCGAG	1 cut(s)	1179
PcsI	WCGNNNNNNNCGW	1 cut(s)	178
PfeI	GAWTC	6 cut(s)	29, 43, 144, 174, 354, 1011
PkrI	GCNGC	3 cut(s)	13, 16, 127
PleI	GAGTC	3 cut(s)	157, 779, 914
PpsI	GAGTC	3 cut(s)	157, 779, 914
PpuMI	RGGWCCY	1 cut(s)	1106
Psp5II	RGGWCCY	1 cut(s)	1106
Psp6I	CCWGG	1 cut(s)	91
PspGI	CCWGG	1 cut(s)	91
PspN4I	GGNNCC	4 cut(s)	10, 191, 990, 1021
PspPI	GGNCC	3 cut(s)	473, 481, 1106
PspPPI	RGGWCCY	1 cut(s)	1106
PspXI	VCTCGAGB	1 cut(s)	1179
PsuI	RGATCY	3 cut(s)	189, 457, 1203
RsaI	GTAC	5 cut(s)	411, 929, 959, 1064, 1249
RsaNI	GTAC	5 cut(s)	410, 928, 958, 1063, 1248
SaqAI	TTAA	4 cut(s)	506, 1166, 1208, 1281
SatI	GCNGC	3 cut(s)	12, 15, 126
Sau3AI	GATC	8 cut(s)	84, 189, 241, 400, 457, 655, 761, 1203
Sau96I	GGNCC	3 cut(s)	473, 481, 1106
SchI	GAGTC	3 cut(s)	157, 780, 914
ScrFI	CCNGG	1 cut(s)	93
SduI	GDGCHC	1 cut(s)	59
SexAI	ACCWGGT	1 cut(s)	91
SfaNI	GCATC	3 cut(s)	688, 714, 1222
Sfr274I	CTCGAG	1 cut(s)	1179
SfuI	TTCGAA	2 cut(s)	714, 877
SinI	GGWCC	3 cut(s)	473, 481, 1106
SlaI	CTCGAG	1 cut(s)	1179
SmlI	CTYRAG	2 cut(s)	683, 1179
SmoI	CTYRAG	2 cut(s)	683, 1179
Sse9I	AATT	9 cut(s)	77, 201, 221, 372, 424, 742, 845, 905, 995
SsiI	CCGC	4 cut(s)	12, 15, 1056, 1100
SspMI	CTAG	2 cut(s)	602, 1137
StyD4I	CCNGG	1 cut(s)	91
StyI	CCWWGG	1 cut(s)	643
TaiI	ACGT	2 cut(s)	286, 1197
TaqI	TCGA	8 cut(s)	172, 714, 774, 877, 999, 1014, 1043, 1180
TaqII	GACCGA	1 cut(s)	1187
TasI	AATT	9 cut(s)	77, 201, 221, 372, 424, 742, 845, 905, 995
TatI	WGTACW	2 cut(s)	409, 1247
TauI	GCSGC	2 cut(s)	14, 17
TfiI	GAWTC	6 cut(s)	29, 43, 144, 174, 354, 1011
Tru1I	TTAA	4 cut(s)	506, 1166, 1208, 1281
Tru9I	TTAA	4 cut(s)	506, 1166, 1208, 1281
TscAI	CASTG	1 cut(s)	64
TseFI	GTSAC	3 cut(s)	749, 857, 917
TseI	GCWGC	1 cut(s)	125
Tsp45I	GTSAC	3 cut(s)	749, 857, 917
TspDTI	ATGAA	3 cut(s)	346, 1094, 1274
TspRI	CASTG	1 cut(s)	64
VneI	GTGCAC	1 cut(s)	55
VpaK11BI	GGWCC	3 cut(s)	473, 481, 1106
XapI	RAATTY	5 cut(s)	77, 221, 424, 742, 905
XhoI	CTCGAG	1 cut(s)	1179
XspI	CTAG	2 cut(s)	602, 1137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.