Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0007138

Physical Location & Seq

Genomic Coordinates Reverse (-)

32409367 .. 32416730

Gene Structure 7364 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG259100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1251 bp

ATGTGGGGGAGCTCCGGAACTCCTGCTGATTCTTTCTATGAGGTCCGCCCTGAGTGTACTGATGTACCCAAAACCCGGTTCAAGATCAAGGCAGGTAAGACTCTAAGTTCAAGGAAATGGCAGGCCGCATTTTCTCCAGAAGGTTATCTGGATATAGGCAAGACTTTGAGTCGAATCCATCGCGGGGGTATCCATCCATCAATTAGAGGAGAAGTTTGGGAATTTCTACTTGGTTGTTATCACCCGAATAGCACATTTGAAGAAAGAGAGCAGCTCCGGCAACGTCGAAGGATAGACTATGCTAGGTGGAAGGAAGATTGCCGCCAAATGTTTCCTGTTGTTGGAAGTGGTAGGTTCATCACTGCCCCTGTAATCACTGATGATGGCCAGCCCATTCAGGATCCAATAGTACTTATGCAAATAAATCCAGATAAGGGACAGGCTTTATCTTCACAGGAAAATGGTAAAGCCAGTGGTAATACCATGAATCCTGCTAGTGCTATGGAACCAGTGAAGGATAAGAAAATAATCCAGTGGCTGCGTACTTTGCATCAAATAGGGCTTGACGTAATTCGCACTGACAGGACGCTAGTGTTTTACGAGAAGCAAGAAAACTTATCAAAACTTTGGGATATTCTAGCTGTTTATGCCTGGATAGATACAGATGTCGGCTACTGTCAAGGAATGAGTGATCTTTGCTCCCCCATGATTATCCTTCTTGATGATGAAGCAGATGCATTTTGGTGTTTTGAACGTTTGATGCGCAGACTGCGAGGAAATTTCAGATGTACCGATAACTCTGTTGGGGTGGAGGCACAACTAAATAATTTGGCTGCAATCACTCAAGTCATTGATCCGAAACTTCATCAGCACTTAGAGACGCTAGGTGGAGGAGATTATTTATTCGCTTTTCGGATGCTTATGGTTTTGTTTCGTCGGGAATTCTCTTTTTGTGATTCTTTATACCTTTGGGAGATGATGTGGGCTCTTGAGTATGACCCTGACTTGTACGGTGTGTATGAAGATTCTGATACTGATAATGAAAGGGCTGAGGGATCTGGATCTTCTAAAGGGAAAGCAAAGTCAAAACGTCATTGTGGGAAGTATGAGAGGGAAAATATGAAAGTAAAAGGTTCAGAAGAACCGCTCCCAATATCCGTTTTCCTTGTTGCCAGTGTCTTAAAAGATAAGAGCTCAAAACTACTGACTGAAGCTCGGGGTCTCGATGATGTTGTTAAGGTTAGATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006886 GO:0008047 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0017016 GO:0017137 GO:0019899 GO:0030234 GO:0030695 GO:0031267 GO:0031338 GO:0032879 GO:0033036 GO:0033043 GO:0034613 GO:0042886 GO:0043085 GO:0043087 GO:0043547 GO:0044093 GO:0044424 GO:0044464 GO:0045184 GO:0046907 GO:0050789 GO:0050790 GO:0050794 GO:0051020 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0060589 GO:0060627 GO:0065007 GO:0065009 GO:0070727 GO:0071702 GO:0071705 GO:0090630 GO:0098772

KEGG Pathways

Metabolic & Signaling

ko04137 map04137

Pfam Domains

Protein Families

RabGAP-TBC

Protein Analysis

416

Amino Acids

47.53

Weight (kDa)

6.23

Isoelectric Point (pI)

39.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RabGAP-TBC	PF00566	166 - 329	1.1e-36	Rab-GTPase-TBC domain
RabGap-TBC_2	PF23436	208 - 327	6.6e-10	RabGAP TBC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27100 AT4G27100 AT5G54780
fragaria_vesca	FvH4_3g21970 FvH4_3g21970 FvH4_3g21970 FvH4_3g21970 FvH4_3g21970 FvH4_3g21970
malus_domestica	MD03G1209800.v1.1 MD11G1224500.v1.1
prunus_persica	Prupe.4G205400_v2.0.a1 Prupe.4G205400_v2.0.a1
pyrus_communis	pycom03g15870 pycom11g19820
rosa_chinensis	RchiOBHm_Chr5g0037821
rosa_laevigata	RLG00000033813
rosa_multiflora	Rmu_sc0005416.1_g000010
rosa_roxburghii	Rroxscaffold_1G00043100
rosa_rugosa	Rorug05G0167900
rosa_samantha	Rh5AG256700 Rh5BG259100 Rh5CG292100 Rh5DG269000
rosa_wichuraiana	Rw5G023800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	764
Acc36I	ACCTGC	1 cut(s)	83
AccBSI	CCGCTC	1 cut(s)	1147
AccII	CGCG	1 cut(s)	183
AccIII	TCCGGA	1 cut(s)	14
AciI	CCGC	5 cut(s)	46, 126, 183, 322, 1145
AclI	AACGTT	1 cut(s)	754
AclWI	GGATC	5 cut(s)	395, 408, 848, 1063, 1069
AcoI	YGGCCR	1 cut(s)	385
AcsI	RAATTY	3 cut(s)	221, 778, 941
AcuI	CTGAAG	1 cut(s)	1230
AfaI	GTAC	6 cut(s)	58, 66, 411, 544, 790, 1010
AfiI	CCNNNNNNNGG	4 cut(s)	75, 184, 341, 434
AgsI	TTSAA	4 cut(s)	82, 111, 260, 752
AhdI	GACNNNNNGTC	1 cut(s)	168
AjnI	CCWGG	1 cut(s)	650
AjuI	GAANNNNNNNTTGG	4 cut(s)	62, 94, 213, 245
AluBI	AGCT	5 cut(s)	12, 274, 641, 1194, 1214
AluI	AGCT	5 cut(s)	12, 274, 641, 1194, 1214
Alw21I	GWGCWC	2 cut(s)	14, 1196
Alw26I	GTCTC	2 cut(s)	872, 1226
AlwI	GGATC	5 cut(s)	395, 408, 848, 1063, 1069
AlwNI	CAGNNNCTG	1 cut(s)	538
Ama87I	CYCGRG	1 cut(s)	1215
Aor13HI	TCCGGA	1 cut(s)	14
AoxI	GGCC	2 cut(s)	123, 385
ApeKI	GCWGC	3 cut(s)	271, 538, 833
ApoI	RAATTY	3 cut(s)	221, 778, 941
AspLEI	GCGC	1 cut(s)	765
AspS9I	GGNCC	1 cut(s)	43
AsuC2I	CCSGG	1 cut(s)	76
AsuHPI	GGTGA	1 cut(s)	233
AvaI	CYCGRG	1 cut(s)	1215
AvaII	GGWCC	1 cut(s)	43
BaeI	ACNNNNGTAYC	4 cut(s)	48, 81, 651, 684
BalI	TGGCCA	1 cut(s)	387
BamHI	GGATCC	1 cut(s)	400
BanII	GRGCYC	3 cut(s)	14, 988, 1196
Bbv12I	GWGCWC	2 cut(s)	14, 1196
BbvCI	CCTCAGC	1 cut(s)	1050
BbvI	GCAGC	3 cut(s)	283, 525, 820
BccI	CCATC	4 cut(s)	186, 201, 205, 377
BciT130I	CCWGG	1 cut(s)	652
BciVI	GTATCC	1 cut(s)	200
BcnI	CCSGG	1 cut(s)	76
BcoDI	GTCTC	2 cut(s)	872, 1226
BfaI	CTAG	5 cut(s)	303, 495, 590, 638, 884
BfuAI	ACCTGC	1 cut(s)	83
BfuI	GTATCC	1 cut(s)	200
BisI	GCNGC	5 cut(s)	126, 272, 322, 539, 834
BlsI	GCNGC	5 cut(s)	127, 273, 323, 540, 835
BmcAI	AGTACT	1 cut(s)	411
Bme1390I	CCNGG	2 cut(s)	76, 652
Bme18I	GGWCC	1 cut(s)	43
BmeRI	GACNNNNNGTC	1 cut(s)	168
BmeT110I	CYCGRG	1 cut(s)	1215
BmgT120I	GGNCC	1 cut(s)	43
BmiI	GGNNCC	2 cut(s)	402, 507
BmrFI	CCNGG	2 cut(s)	76, 652
BmsI	GCATC	4 cut(s)	559, 724, 750, 906
BplI	GAGNNNNNCTC	2 cut(s)	258, 290
BpmI	CTGGAG	1 cut(s)	120
Bpu10I	CCTNAGC	1 cut(s)	1050
BpuEI	CTTGAG	2 cut(s)	828, 1010
BpuMI	CCSGG	1 cut(s)	76
BsaBI	GATNNNNATC	1 cut(s)	1060
BsaI	GGTCTC	1 cut(s)	1226
BsaWI	WCCGGW	1 cut(s)	14
BsaXI	ACNNNNNCTCC	2 cut(s)	965, 995
Bsc4I	CCNNNNNNNGG	4 cut(s)	75, 184, 341, 434
Bse1I	ACTGG	4 cut(s)	471, 509, 532, 1173
Bse8I	GATNNNNATC	1 cut(s)	1060
BseAI	TCCGGA	1 cut(s)	14
BseBI	CCWGG	1 cut(s)	652
BseGI	GGATG	2 cut(s)	193, 921
BseJI	GATNNNNATC	1 cut(s)	1060
BseLI	CCNNNNNNNGG	4 cut(s)	75, 184, 341, 434
BseMII	CTCAG	2 cut(s)	42, 1041
BseNI	ACTGG	4 cut(s)	471, 509, 532, 1173
BseRI	GAGGAG	2 cut(s)	222, 906
BseXI	GCAGC	3 cut(s)	283, 525, 820
Bsh1236I	CGCG	1 cut(s)	183
BshFI	GGCC	2 cut(s)	125, 387
BsiHKAI	GWGCWC	2 cut(s)	14, 1196
BsiHKCI	CYCGRG	1 cut(s)	1215
BsiSI	CCGG	3 cut(s)	15, 76, 277
BslFI	GGGAC	1 cut(s)	450
BslI	CCNNNNNNNGG	4 cut(s)	75, 184, 341, 434
BsmAI	GTCTC	2 cut(s)	872, 1226
BsmBI	CGTCTC	1 cut(s)	872
BsmFI	GGGAC	1 cut(s)	450
BsnI	GGCC	2 cut(s)	125, 387
Bso31I	GGTCTC	1 cut(s)	1226
BsoBI	CYCGRG	1 cut(s)	1215
Bsp1286I	GDGCHC	3 cut(s)	14, 988, 1196
Bsp13I	TCCGGA	1 cut(s)	14
Bsp143I	GATC	6 cut(s)	84, 400, 691, 853, 1055, 1061
BspACI	CCGC	5 cut(s)	46, 126, 183, 322, 1145
BspANI	GGCC	2 cut(s)	125, 387
BspCNI	CTCAG	2 cut(s)	43, 1042
BspEI	TCCGGA	1 cut(s)	14
BspFNI	CGCG	1 cut(s)	183
BspLI	GGNNCC	2 cut(s)	402, 507
BspMI	ACCTGC	1 cut(s)	83
BspPI	GGATC	5 cut(s)	395, 408, 848, 1063, 1069
BspTNI	GGTCTC	1 cut(s)	1226
BsrBI	CCGCTC	1 cut(s)	1147
BsrI	ACTGG	4 cut(s)	471, 509, 532, 1173
BssMI	GATC	6 cut(s)	84, 400, 691, 853, 1055, 1061
Bst2UI	CCWGG	1 cut(s)	652
Bst4CI	ACNGT	2 cut(s)	677, 1013
BstC8I	GCNNGC	2 cut(s)	123, 389
BstDEI	CTNAG	4 cut(s)	51, 104, 874, 1050
BstF5I	GGATG	2 cut(s)	193, 921
BstFNI	CGCG	1 cut(s)	183
BstHHI	GCGC	1 cut(s)	765
BstKTI	GATC	6 cut(s)	87, 403, 694, 856, 1058, 1064
BstMAI	GTCTC	2 cut(s)	872, 1226
BstMBI	GATC	6 cut(s)	84, 400, 691, 853, 1055, 1061
BstMWI	GCNNNNNNNGC	4 cut(s)	277, 547, 647, 769
BstNI	CCWGG	1 cut(s)	652
BstSCI	CCNGG	2 cut(s)	74, 650
BstUI	CGCG	1 cut(s)	183
BstV1I	GCAGC	3 cut(s)	283, 525, 820
BstX2I	RGATCY	3 cut(s)	400, 1055, 1061
BstYI	RGATCY	3 cut(s)	400, 1055, 1061
BsuI	GTATCC	1 cut(s)	200
BsuRI	GGCC	2 cut(s)	125, 387
BtgZI	GCGATG	1 cut(s)	164
BtsCI	GGATG	2 cut(s)	193, 921
BtsI	GCAGTG	1 cut(s)	360
BtsIMutI	CAGTG	7 cut(s)	360, 375, 478, 516, 539, 576, 1180
BveI	ACCTGC	1 cut(s)	83
Cac8I	GCNNGC	2 cut(s)	123, 389
CaiI	CAGNNNCTG	1 cut(s)	538
CfoI	GCGC	1 cut(s)	765
Cfr13I	GGNCC	1 cut(s)	43
CseI	GACGC	2 cut(s)	595, 889
Csp6I	GTAC	6 cut(s)	57, 65, 410, 543, 789, 1009
CviAII	CATG	2 cut(s)	484, 706
CviQI	GTAC	6 cut(s)	57, 65, 410, 543, 789, 1009
DdeI	CTNAG	4 cut(s)	51, 104, 874, 1050
DpnI	GATC	6 cut(s)	86, 402, 693, 855, 1057, 1063
DpnII	GATC	6 cut(s)	84, 400, 691, 853, 1055, 1061
DriI	GACNNNNNGTC	1 cut(s)	168
EaeI	YGGCCR	1 cut(s)	385
Eam1105I	GACNNNNNGTC	1 cut(s)	168
EciI	GGCGGA	1 cut(s)	35
Ecl136II	GAGCTC	2 cut(s)	12, 1194
Eco24I	GRGCYC	3 cut(s)	14, 988, 1196
Eco31I	GGTCTC	1 cut(s)	1226
Eco47I	GGWCC	1 cut(s)	43
Eco53kI	GAGCTC	2 cut(s)	12, 1194
Eco57I	CTGAAG	1 cut(s)	1230
Eco88I	CYCGRG	1 cut(s)	1215
EcoICRI	GAGCTC	2 cut(s)	12, 1194
EcoRI	GAATTC	1 cut(s)	941
EcoRII	CCWGG	1 cut(s)	650
EcoT22I	ATGCAT	1 cut(s)	739
EcoT38I	GRGCYC	3 cut(s)	14, 988, 1196
Esp3I	CGTCTC	1 cut(s)	872
FaeI	CATG	2 cut(s)	487, 709
FaqI	GGGAC	1 cut(s)	450
FatI	CATG	2 cut(s)	483, 705
FauI	CCCGC	1 cut(s)	176
Fnu4HI	GCNGC	5 cut(s)	126, 272, 322, 539, 834
FokI	GGATG	2 cut(s)	180, 928
FriOI	GRGCYC	3 cut(s)	14, 988, 1196
Fsp4HI	GCNGC	5 cut(s)	126, 272, 322, 539, 834
FspBI	CTAG	5 cut(s)	303, 495, 590, 638, 884
FspI	TGCGCA	1 cut(s)	764
GlaI	GCGC	1 cut(s)	764
GluI	GCNGC	5 cut(s)	126, 272, 322, 539, 834
GsuI	CTGGAG	1 cut(s)	120
HaeIII	GGCC	2 cut(s)	125, 387
HapII	CCGG	3 cut(s)	15, 76, 277
HgaI	GACGC	2 cut(s)	595, 889
HhaI	GCGC	1 cut(s)	765
Hin1II	CATG	2 cut(s)	487, 709
Hin6I	GCGC	1 cut(s)	763
HinP1I	GCGC	1 cut(s)	763
HinfI	GANTC	7 cut(s)	29, 100, 169, 174, 487, 956, 1025
HpaII	CCGG	3 cut(s)	15, 76, 277
HphI	GGTGA	1 cut(s)	233
Hpy166II	GTNNAC	1 cut(s)	57
Hpy188I	TCNGA	5 cut(s)	785, 858, 915, 1030, 1138
Hpy8I	GTNNAC	1 cut(s)	57
Hpy99I	CGWCG	2 cut(s)	288, 939
HpyAV	CCTTC	5 cut(s)	134, 282, 304, 508, 725
HpyCH4III	ACNGT	2 cut(s)	677, 1013
HpyCH4IV	ACGT	4 cut(s)	283, 567, 754, 1090
HpyCH4V	TGCA	4 cut(s)	418, 550, 737, 836
HpyF10VI	GCNNNNNNNGC	4 cut(s)	277, 547, 647, 769
HpyF3I	CTNAG	4 cut(s)	51, 104, 874, 1050
HpySE526I	ACGT	4 cut(s)	283, 567, 754, 1090
Hsp92II	CATG	2 cut(s)	487, 709
HspAI	GCGC	1 cut(s)	763
Kpn2I	TCCGGA	1 cut(s)	14
Kzo9I	GATC	6 cut(s)	84, 400, 691, 853, 1055, 1061
LmnI	GCTCC	5 cut(s)	9, 17, 279, 704, 1152
Lsp1109I	GCAGC	3 cut(s)	283, 525, 820
LweI	GCATC	4 cut(s)	559, 724, 750, 906
MaeI	CTAG	5 cut(s)	303, 495, 590, 638, 884
MaeII	ACGT	4 cut(s)	283, 567, 754, 1090
MalI	GATC	6 cut(s)	86, 402, 693, 855, 1057, 1063
MbiI	CCGCTC	1 cut(s)	1147
MboI	GATC	6 cut(s)	84, 400, 691, 853, 1055, 1061
MboII	GAAGA	6 cut(s)	272, 326, 441, 1034, 1056, 1151
MflI	RGATCY	3 cut(s)	400, 1055, 1061
MhlI	GDGCHC	3 cut(s)	14, 988, 1196
MlsI	TGGCCA	1 cut(s)	387
MluCI	AATT	6 cut(s)	201, 221, 570, 778, 826, 941
MluNI	TGGCCA	1 cut(s)	387
MlyI	GAGTC	2 cut(s)	94, 178
MmeI	TCCRAC	1 cut(s)	322
MnlI	CCTC	7 cut(s)	34, 200, 767, 805, 884, 1045, 1104
Mox20I	TGGCCA	1 cut(s)	387
Mph1103I	ATGCAT	1 cut(s)	739
MroI	TCCGGA	1 cut(s)	14
MscI	TGGCCA	1 cut(s)	387
MseI	TTAA	2 cut(s)	1181, 1236
MslI	CAYNNNNRTG	1 cut(s)	742
Msp20I	TGGCCA	1 cut(s)	387
MspI	CCGG	3 cut(s)	15, 76, 277
MspR9I	CCNGG	2 cut(s)	76, 652
MvaI	CCWGG	1 cut(s)	652
MvnI	CGCG	1 cut(s)	183
MwoI	GCNNNNNNNGC	4 cut(s)	277, 547, 647, 769
NciI	CCSGG	1 cut(s)	76
NdeII	GATC	6 cut(s)	84, 400, 691, 853, 1055, 1061
NlaIII	CATG	2 cut(s)	487, 709
NlaIV	GGNNCC	2 cut(s)	402, 507
NsbI	TGCGCA	1 cut(s)	764
NsiI	ATGCAT	1 cut(s)	739
PfeI	GAWTC	5 cut(s)	29, 174, 487, 956, 1025
PkrI	GCNGC	5 cut(s)	127, 273, 323, 540, 835
PleI	GAGTC	2 cut(s)	94, 177
PpsI	GAGTC	2 cut(s)	94, 177
Psp124BI	GAGCTC	2 cut(s)	14, 1196
Psp1406I	AACGTT	1 cut(s)	754
Psp6I	CCWGG	1 cut(s)	650
PspGI	CCWGG	1 cut(s)	650
PspN4I	GGNNCC	2 cut(s)	402, 507
PspPI	GGNCC	1 cut(s)	43
PstNI	CAGNNNCTG	1 cut(s)	538
PsuI	RGATCY	3 cut(s)	400, 1055, 1061
RsaI	GTAC	6 cut(s)	58, 66, 411, 544, 790, 1010
RsaNI	GTAC	6 cut(s)	57, 65, 410, 543, 789, 1009
RseI	CAYNNNNRTG	1 cut(s)	742
SacI	GAGCTC	2 cut(s)	14, 1196
SaqAI	TTAA	2 cut(s)	1181, 1236
SatI	GCNGC	5 cut(s)	126, 272, 322, 539, 834
Sau3AI	GATC	6 cut(s)	84, 400, 691, 853, 1055, 1061
Sau96I	GGNCC	1 cut(s)	43
ScaI	AGTACT	1 cut(s)	411
SchI	GAGTC	2 cut(s)	94, 178
ScrFI	CCNGG	2 cut(s)	76, 652
SduI	GDGCHC	3 cut(s)	14, 988, 1196
SfaNI	GCATC	4 cut(s)	559, 724, 750, 906
SinI	GGWCC	1 cut(s)	43
SmiMI	CAYNNNNRTG	1 cut(s)	742
SmlI	CTYRAG	2 cut(s)	843, 989
SmoI	CTYRAG	2 cut(s)	843, 989
Sse9I	AATT	6 cut(s)	201, 221, 570, 778, 826, 941
SsiI	CCGC	5 cut(s)	46, 126, 183, 322, 1145
SspMI	CTAG	5 cut(s)	303, 495, 590, 638, 884
SstI	GAGCTC	2 cut(s)	14, 1196
StyD4I	CCNGG	2 cut(s)	74, 650
TaaI	ACNGT	2 cut(s)	677, 1013
TaiI	ACGT	4 cut(s)	286, 570, 757, 1093
TaqI	TCGA	3 cut(s)	172, 286, 1224
TasI	AATT	6 cut(s)	201, 221, 570, 778, 826, 941
TatI	WGTACW	2 cut(s)	56, 409
TauI	GCSGC	2 cut(s)	128, 324
TfiI	GAWTC	5 cut(s)	29, 174, 487, 956, 1025
Tru1I	TTAA	2 cut(s)	1181, 1236
Tru9I	TTAA	2 cut(s)	1181, 1236
TscAI	CASTG	7 cut(s)	367, 382, 478, 516, 539, 583, 1180
TseI	GCWGC	3 cut(s)	271, 538, 833
TspDTI	ATGAA	7 cut(s)	346, 500, 741, 854, 1035, 1056, 1136
TspGWI	ACGGA	1 cut(s)	1147
TspRI	CASTG	7 cut(s)	367, 382, 478, 516, 539, 583, 1180
VpaK11BI	GGWCC	1 cut(s)	43
XapI	RAATTY	3 cut(s)	221, 778, 941
XspI	CTAG	5 cut(s)	303, 495, 590, 638, 884
ZrmI	AGTACT	1 cut(s)	411
Zsp2I	ATGCAT	1 cut(s)	739

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.