Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0007138

Physical Location & Seq

Genomic Coordinates Forward (+)

17113696 .. 17117434

Gene Structure 3739 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g15870.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGTTTCCTGTTGTTGGGAGTGGTAGGTTTATGACTGCCCCCGTAATCACTGAAGATGGTCAGCCCATTCAGGATCCCATAGTACTTTCACAAATAAATCCAGACAAGGGTTCTCAGGATAATGGTTCAAGCACAAATCGTAATAATGCTATGGAACCAGTAACTGACAAAAAAGTAATCCAGTGGATGCTTACTCTACACCAAATAGGTCTTGACGTGGTTCGTACTGACAGGACACTAGTATTTTACGAGCAGCAAGAGAACTTATCAAAACTTTGGGATATTCTAGCTGTTTATGCCTGGATAGATACAGATGTCGGCTATTGTCAAGGAATGAGTGATCTTTGCTCCCCCATGATTATCCTTCTAGATGATGAATCAGATGCATTTTGGTGCTTTGAACGATTGATGCGCAGGCTGCGAGGAAATTTCAGATGTACCGATAGCTCTGTTGGGGTGGAGGTGCAACTAAGTAATCTGGCTTCAATTACTCAAGTCATTGATCCAAAACTTCATGAGCACTTAGAGACACTAGGTGGAGGTGACTATTTATTTGCTTTCCGGATGCTTATGGTTTTGTTCCGTCGAGAATTCTCTTTTTGTGATTCTTTATACCTTTGGGAGATGATGTGGGCCCTTGAATACGACCCTGACTTGTTCAGTGTGTACGAAGAATCTGATATTGATAGTGAGAAGGCCGAGGGGTCTAAGGGCAAACCAAAGTCAACACGTCAGTGTGGGAAGTATGAGAGGGAAAACATGAAAAGTGGAGCAAAGAATTCAGAAGCACCGCTCCCAATTTCTATTTTCCTTGTTGCCAGTGTCCTGAAAGATAAGAGCTCAAAGCTACTTACCGAAGCTCGGGGTCTGGATGATGTTGTTAAGATATTGAATGACATAACTGGAAATTTAGATGCCAAAAAAGCTTGCACTGGGGCATTGAAACTCCACAAGAAATATCTAAAAAAGGCGCCCAAGAAGACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006886 GO:0008047 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0017016 GO:0017137 GO:0019899 GO:0030234 GO:0030695 GO:0031267 GO:0031338 GO:0032879 GO:0033036 GO:0033043 GO:0034613 GO:0042886 GO:0043085 GO:0043087 GO:0043547 GO:0044093 GO:0044424 GO:0044464 GO:0045184 GO:0046907 GO:0050789 GO:0050790 GO:0050794 GO:0051020 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0060589 GO:0060627 GO:0065007 GO:0065009 GO:0070727 GO:0071702 GO:0071705 GO:0090630 GO:0098772

KEGG Pathways

Metabolic & Signaling

ko04137 map04137

Pfam Domains

Protein Families

RabGAP-TBC

Protein Analysis

329

Amino Acids

37.08

Weight (kDa)

5.32

Isoelectric Point (pI)

33.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27100 AT4G27100 AT5G54780
fragaria_vesca	FvH4_3g21970 FvH4_3g21970 FvH4_3g21970 FvH4_3g21970 FvH4_3g21970 FvH4_3g21970
malus_domestica	MD03G1209800.v1.1 MD11G1224500.v1.1
prunus_persica	Prupe.4G205400_v2.0.a1 Prupe.4G205400_v2.0.a1
pyrus_communis	pycom03g15870 pycom11g19820
rosa_chinensis	RchiOBHm_Chr5g0037821
rosa_laevigata	RLG00000033813
rosa_multiflora	Rmu_sc0005416.1_g000010
rosa_roxburghii	Rroxscaffold_1G00043100
rosa_rugosa	Rorug05G0167900
rosa_samantha	Rh5AG256700 Rh5BG259100 Rh5CG292100 Rh5DG269000
rosa_wichuraiana	Rw5G023800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	413
AccB1I	GGYRCC	1 cut(s)	970
AccBSI	CCGCTC	1 cut(s)	793
AccIII	TCCGGA	1 cut(s)	561
AciI	CCGC	1 cut(s)	791
AclWI	GGATC	3 cut(s)	68, 81, 497
AcsI	RAATTY	4 cut(s)	427, 590, 778, 907
AcuI	CTGAAG	1 cut(s)	72
AcyI	GRCGYC	1 cut(s)	971
AdeI	CACNNNGTG	1 cut(s)	536
AfaI	GTAC	4 cut(s)	84, 226, 439, 668
AfiI	CCNNNNNNNGG	3 cut(s)	14, 107, 861
AflIII	ACRYGT	1 cut(s)	728
AgsI	TTSAA	6 cut(s)	129, 401, 486, 641, 892, 943
AhlI	ACTAGT	1 cut(s)	238
AjiI	CACGTC	2 cut(s)	217, 731
AjnI	CCWGG	1 cut(s)	299
AleI	CACNNNNGTG	1 cut(s)	733
AluBI	AGCT	6 cut(s)	290, 447, 840, 847, 860, 926
AluI	AGCT	6 cut(s)	290, 447, 840, 847, 860, 926
Alw21I	GWGCWC	2 cut(s)	522, 842
Alw26I	GTCTC	1 cut(s)	521
AlwI	GGATC	3 cut(s)	68, 81, 497
AlwNI	CAGNNNCTG	1 cut(s)	164
Ama87I	CYCGRG	1 cut(s)	861
Aor13HI	TCCGGA	1 cut(s)	561
AoxI	GGCC	2 cut(s)	633, 696
ApaI	GGGCCC	1 cut(s)	637
ApeKI	GCWGC	2 cut(s)	253, 418
ApoI	RAATTY	4 cut(s)	427, 590, 778, 907
ArsI	GACNNNNNNTTYG	2 cut(s)	536, 568
AspLEI	GCGC	2 cut(s)	414, 973
AspS9I	GGNCC	2 cut(s)	633, 634
AsuHPI	GGTGA	1 cut(s)	554
AvaI	CYCGRG	1 cut(s)	861
BaeGI	GKGCMC	1 cut(s)	637
BaeI	ACNNNNGTAYC	2 cut(s)	300, 333
BamHI	GGATCC	1 cut(s)	73
BanI	GGYRCC	1 cut(s)	970
BanII	GRGCYC	2 cut(s)	637, 842
BarI	GAAGNNNNNNTAC	2 cut(s)	466, 498
Bbv12I	GWGCWC	2 cut(s)	522, 842
BbvI	GCAGC	2 cut(s)	265, 405
BccI	CCATC	1 cut(s)	50
BciT130I	CCWGG	1 cut(s)	301
BcoDI	GTCTC	1 cut(s)	521
BcuI	ACTAGT	1 cut(s)	238
BfaI	CTAG	4 cut(s)	239, 287, 368, 533
BfoI	RGCGCY	1 cut(s)	974
BisI	GCNGC	2 cut(s)	254, 419
BlsI	GCNGC	2 cut(s)	255, 420
BmcAI	AGTACT	1 cut(s)	84
Bme1390I	CCNGG	1 cut(s)	301
BmeT110I	CYCGRG	1 cut(s)	861
BmgBI	CACGTC	2 cut(s)	217, 731
BmgT120I	GGNCC	2 cut(s)	633, 634
BmiI	GGNNCC	4 cut(s)	75, 156, 635, 972
BmrFI	CCNGG	1 cut(s)	301
BmrI	ACTGGG	1 cut(s)	942
BmsI	GCATC	5 cut(s)	177, 373, 399, 555, 904
BmuI	ACTGGG	1 cut(s)	942
BpuEI	CTTGAG	1 cut(s)	477
BsaHI	GRCGYC	1 cut(s)	971
BsaJI	CCNNGG	1 cut(s)	699
BsaWI	WCCGGW	1 cut(s)	561
BsaXI	ACNNNNNCTCC	2 cut(s)	614, 644
Bsc4I	CCNNNNNNNGG	3 cut(s)	14, 107, 861
Bse1I	ACTGG	5 cut(s)	158, 181, 819, 907, 937
BseAI	TCCGGA	1 cut(s)	561
BseBI	CCWGG	1 cut(s)	301
BseDI	CCNNGG	1 cut(s)	699
BseGI	GGATG	3 cut(s)	192, 570, 877
BseLI	CCNNNNNNNGG	3 cut(s)	14, 107, 861
BseMII	CTCAG	1 cut(s)	128
BseNI	ACTGG	5 cut(s)	158, 181, 819, 907, 937
BseSI	GKGCMC	1 cut(s)	637
BseXI	GCAGC	2 cut(s)	265, 405
BshFI	GGCC	2 cut(s)	635, 698
BshNI	GGYRCC	1 cut(s)	970
BsiHKAI	GWGCWC	2 cut(s)	522, 842
BsiHKCI	CYCGRG	1 cut(s)	861
BsiSI	CCGG	1 cut(s)	562
BslI	CCNNNNNNNGG	3 cut(s)	14, 107, 861
BsmAI	GTCTC	1 cut(s)	521
BsnI	GGCC	2 cut(s)	635, 698
BsoBI	CYCGRG	1 cut(s)	861
Bsp120I	GGGCCC	1 cut(s)	633
Bsp1286I	GDGCHC	3 cut(s)	522, 637, 842
Bsp13I	TCCGGA	1 cut(s)	561
Bsp143I	GATC	3 cut(s)	73, 340, 502
BspACI	CCGC	1 cut(s)	791
BspANI	GGCC	2 cut(s)	635, 698
BspCNI	CTCAG	1 cut(s)	127
BspEI	TCCGGA	1 cut(s)	561
BspHI	TCATGA	1 cut(s)	514
BspLI	GGNNCC	4 cut(s)	75, 156, 635, 972
BspPI	GGATC	3 cut(s)	68, 81, 497
BspT107I	GGYRCC	1 cut(s)	970
BsrBI	CCGCTC	1 cut(s)	793
BsrI	ACTGG	5 cut(s)	158, 181, 819, 907, 937
BssECI	CCNNGG	1 cut(s)	699
BssMI	GATC	3 cut(s)	73, 340, 502
BssNI	GRCGYC	1 cut(s)	971
Bst2UI	CCWGG	1 cut(s)	301
BstACI	GRCGYC	1 cut(s)	971
BstC8I	GCNNGC	2 cut(s)	416, 928
BstDEI	CTNAG	4 cut(s)	114, 470, 523, 708
BstF5I	GGATG	3 cut(s)	192, 570, 877
BstH2I	RGCGCY	1 cut(s)	974
BstHHI	GCGC	2 cut(s)	414, 973
BstKTI	GATC	3 cut(s)	76, 343, 505
BstMAI	GTCTC	1 cut(s)	521
BstMBI	GATC	3 cut(s)	73, 340, 502
BstMWI	GCNNNNNNNGC	3 cut(s)	296, 418, 923
BstNI	CCWGG	1 cut(s)	301
BstSCI	CCNGG	1 cut(s)	299
BstSLI	GKGCMC	1 cut(s)	637
BstV1I	GCAGC	2 cut(s)	265, 405
BstX2I	RGATCY	1 cut(s)	73
BstYI	RGATCY	1 cut(s)	73
BsuRI	GGCC	2 cut(s)	635, 698
BtrI	CACGTC	2 cut(s)	217, 731
BtsCI	GGATG	3 cut(s)	192, 570, 877
BtsIMutI	CAGTG	6 cut(s)	48, 188, 667, 740, 826, 930
Cac8I	GCNNGC	2 cut(s)	416, 928
CaiI	CAGNNNCTG	1 cut(s)	164
CciI	TCATGA	1 cut(s)	514
CfoI	GCGC	2 cut(s)	414, 973
Cfr13I	GGNCC	2 cut(s)	633, 634
Csp6I	GTAC	4 cut(s)	83, 225, 438, 667
CviAII	CATG	3 cut(s)	355, 515, 760
CviQI	GTAC	4 cut(s)	83, 225, 438, 667
DdeI	CTNAG	4 cut(s)	114, 470, 523, 708
DinI	GGCGCC	1 cut(s)	972
DpnI	GATC	3 cut(s)	75, 342, 504
DpnII	GATC	3 cut(s)	73, 340, 502
DraIII	CACNNNGTG	1 cut(s)	536
Ecl136II	GAGCTC	1 cut(s)	840
Eco24I	GRGCYC	2 cut(s)	637, 842
Eco53kI	GAGCTC	1 cut(s)	840
Eco57I	CTGAAG	1 cut(s)	72
Eco88I	CYCGRG	1 cut(s)	861
EcoICRI	GAGCTC	1 cut(s)	840
EcoO109I	RGGNCCY	1 cut(s)	634
EcoRI	GAATTC	2 cut(s)	590, 778
EcoRII	CCWGG	1 cut(s)	299
EcoT22I	ATGCAT	1 cut(s)	388
EcoT38I	GRGCYC	2 cut(s)	637, 842
EgeI	GGCGCC	1 cut(s)	972
EheI	GGCGCC	1 cut(s)	972
FaeI	CATG	3 cut(s)	358, 518, 763
FatI	CATG	3 cut(s)	354, 514, 759
Fnu4HI	GCNGC	2 cut(s)	254, 419
FokI	GGATG	3 cut(s)	199, 577, 884
FriOI	GRGCYC	2 cut(s)	637, 842
Fsp4HI	GCNGC	2 cut(s)	254, 419
FspBI	CTAG	4 cut(s)	239, 287, 368, 533
FspI	TGCGCA	1 cut(s)	413
GlaI	GCGC	2 cut(s)	413, 972
GluI	GCNGC	2 cut(s)	254, 419
HaeII	RGCGCY	1 cut(s)	974
HaeIII	GGCC	2 cut(s)	635, 698
HapII	CCGG	1 cut(s)	562
HhaI	GCGC	2 cut(s)	414, 973
Hin1I	GRCGYC	1 cut(s)	971
Hin1II	CATG	3 cut(s)	358, 518, 763
Hin6I	GCGC	2 cut(s)	412, 971
HinP1I	GCGC	2 cut(s)	412, 971
HincII	GTYRAC	1 cut(s)	726
HindII	GTYRAC	1 cut(s)	726
HindIII	AAGCTT	1 cut(s)	924
HinfI	GANTC	3 cut(s)	377, 605, 674
HpaII	CCGG	1 cut(s)	562
HphI	GGTGA	1 cut(s)	554
Hpy166II	GTNNAC	2 cut(s)	667, 726
Hpy188I	TCNGA	4 cut(s)	382, 434, 679, 784
Hpy8I	GTNNAC	2 cut(s)	667, 726
Hpy99I	CGWCG	1 cut(s)	588
HpyAV	CCTTC	2 cut(s)	374, 688
HpyCH4IV	ACGT	2 cut(s)	216, 730
HpyCH4V	TGCA	3 cut(s)	386, 466, 930
HpyF10VI	GCNNNNNNNGC	3 cut(s)	296, 418, 923
HpyF3I	CTNAG	4 cut(s)	114, 470, 523, 708
HpySE526I	ACGT	2 cut(s)	216, 730
Hsp92I	GRCGYC	1 cut(s)	971
Hsp92II	CATG	3 cut(s)	358, 518, 763
HspAI	GCGC	2 cut(s)	412, 971
KasI	GGCGCC	1 cut(s)	970
Kpn2I	TCCGGA	1 cut(s)	561
Kzo9I	GATC	3 cut(s)	73, 340, 502
LmnI	GCTCC	3 cut(s)	353, 770, 798
Lsp1109I	GCAGC	2 cut(s)	265, 405
LweI	GCATC	5 cut(s)	177, 373, 399, 555, 904
MaeI	CTAG	4 cut(s)	239, 287, 368, 533
MaeII	ACGT	2 cut(s)	216, 730
MaeIII	GTNAC	2 cut(s)	160, 542
MalI	GATC	3 cut(s)	75, 342, 504
MbiI	CCGCTC	1 cut(s)	793
MboI	GATC	3 cut(s)	73, 340, 502
MboII	GAAGA	2 cut(s)	65, 683
MflI	RGATCY	1 cut(s)	73
MhlI	GDGCHC	3 cut(s)	522, 637, 842
MluCI	AATT	6 cut(s)	427, 486, 590, 778, 798, 907
Mly113I	GGCGCC	1 cut(s)	971
MnlI	CCTC	5 cut(s)	416, 454, 533, 694, 744
Mph1103I	ATGCAT	1 cut(s)	388
MroI	TCCGGA	1 cut(s)	561
MseI	TTAA	1 cut(s)	882
MslI	CAYNNNNRTG	2 cut(s)	391, 733
MspI	CCGG	1 cut(s)	562
MspR9I	CCNGG	1 cut(s)	301
MvaI	CCWGG	1 cut(s)	301
MwoI	GCNNNNNNNGC	3 cut(s)	296, 418, 923
NarI	GGCGCC	1 cut(s)	971
NdeII	GATC	3 cut(s)	73, 340, 502
NlaIII	CATG	3 cut(s)	358, 518, 763
NlaIV	GGNNCC	4 cut(s)	75, 156, 635, 972
NmeAIII	GCCGAG	1 cut(s)	724
NmuCI	GTSAC	1 cut(s)	542
NsbI	TGCGCA	1 cut(s)	413
NsiI	ATGCAT	1 cut(s)	388
OliI	CACNNNNGTG	1 cut(s)	733
PagI	TCATGA	1 cut(s)	514
PfeI	GAWTC	3 cut(s)	377, 605, 674
PkrI	GCNGC	2 cut(s)	255, 420
PluTI	GGCGCC	1 cut(s)	974
Psp124BI	GAGCTC	1 cut(s)	842
Psp6I	CCWGG	1 cut(s)	299
PspGI	CCWGG	1 cut(s)	299
PspN4I	GGNNCC	4 cut(s)	75, 156, 635, 972
PspOMI	GGGCCC	1 cut(s)	633
PspPI	GGNCC	2 cut(s)	633, 634
PstNI	CAGNNNCTG	1 cut(s)	164
PsuI	RGATCY	1 cut(s)	73
RsaI	GTAC	4 cut(s)	84, 226, 439, 668
RsaNI	GTAC	4 cut(s)	83, 225, 438, 667
RseI	CAYNNNNRTG	2 cut(s)	391, 733
SacI	GAGCTC	1 cut(s)	842
SaqAI	TTAA	1 cut(s)	882
SatI	GCNGC	2 cut(s)	254, 419
Sau3AI	GATC	3 cut(s)	73, 340, 502
Sau96I	GGNCC	2 cut(s)	633, 634
ScaI	AGTACT	1 cut(s)	84
ScrFI	CCNGG	1 cut(s)	301
SduI	GDGCHC	3 cut(s)	522, 637, 842
SfaNI	GCATC	5 cut(s)	177, 373, 399, 555, 904
SfoI	GGCGCC	1 cut(s)	972
SmiMI	CAYNNNNRTG	2 cut(s)	391, 733
SmlI	CTYRAG	1 cut(s)	492
SmoI	CTYRAG	1 cut(s)	492
SpeI	ACTAGT	1 cut(s)	238
Sse9I	AATT	6 cut(s)	427, 486, 590, 778, 798, 907
SsiI	CCGC	1 cut(s)	791
SspDI	GGCGCC	1 cut(s)	970
SspMI	CTAG	4 cut(s)	239, 287, 368, 533
SstI	GAGCTC	1 cut(s)	842
StyD4I	CCNGG	1 cut(s)	299
TaiI	ACGT	2 cut(s)	219, 733
TaqI	TCGA	1 cut(s)	586
TasI	AATT	6 cut(s)	427, 486, 590, 778, 798, 907
TatI	WGTACW	1 cut(s)	82
TfiI	GAWTC	3 cut(s)	377, 605, 674
Tru1I	TTAA	1 cut(s)	882
Tru9I	TTAA	1 cut(s)	882
TscAI	CASTG	6 cut(s)	55, 188, 667, 740, 826, 937
TseFI	GTSAC	1 cut(s)	542
TseI	GCWGC	2 cut(s)	253, 418
Tsp45I	GTSAC	1 cut(s)	542
TspDTI	ATGAA	3 cut(s)	390, 503, 776
TspGWI	ACGGA	1 cut(s)	572
TspRI	CASTG	6 cut(s)	55, 188, 667, 740, 826, 937
XapI	RAATTY	4 cut(s)	427, 590, 778, 907
XbaI	TCTAGA	1 cut(s)	367
XspI	CTAG	4 cut(s)	239, 287, 368, 533
ZrmI	AGTACT	1 cut(s)	84
Zsp2I	ATGCAT	1 cut(s)	388

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.