MD11G1224500.v1.1

TBC1 domain family member

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
Physical Location & Seq
Forward (+)
32854404 .. 32860892
6489 bp
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UTR
Exon/CDS
Intron
MD11G1224500.v1.1.491

Sequence Viewer

Length: 1299 bp
ATGTGGAGGGACGCTGGGACTCCTGCTGATTCTTTCTATGAAGTACGCCCTGAGTGTACTGATGTTCCCAAAACCCGCTTCAAGATCAAGGCAGGTAAAACTCTAAGTGTAAGGAAATGGCAGGCTGCATTTAGTCCAGAAGGCCAACTGGATATAGGCAAGACTTTAAGTCGAATTCACCGTGGGGGAATCCATCCATCAATTAGAGGAGAAGTTTGGGAGTTTCTATTAGGTTGTTATGATCCTACGAGCACATTTGATGAAAGAGAGCAGATTCGGCAACGTCGAAGAGTGCAATATGCTCGGTCGAAGGAAGATTGCCGTCAAATGTTTCCTGTTGTTGGAAGTGGTAGGTTTATCACTGCCCCCGTAATCACTGAAGATGGTCAGCCCATTCAGGATCCCATAGTACTTTCACAAATAAATCCAGACAATGGTTCAAGTACAAACCGTAAGAATGTCATGGAACCAGTAACGGACAAGAAAGTAATCCAGTGGATGCTTACTCTACATCAGATAGGTCTTGACGTGGTTCGTACTGACAGGACACTAGTGTTTTACGAGAAGCAAGAAAACTTGTCAAAACTTTGGGATATTTTAGCCGTTTATGCCTGGATAGATACAGATGTTGGTTATTGTCAAGGAATGAGTGATCTTTGCTCCCCCATGATTATCCTTCTTGATGATGAAGCAGATGCATTTTGGTGCTTTGAACGCTTGATGCGCAGACTGCGAGGAAATTTCAGATGTACCGATAGCTCTGTTGGGGTGGAGGCACAACTAAGTAATCTGGCTTCAATTACTCAAGTCATTGATCCAAAACTTCATCAGCACTTAGAGACACTAGGCGGAGGTGACTATTTATTTGCTTTCCGGATGCTTATGGTTTTGTTCCGACGAGAATTCTCTTTTTGTGATTCTTTATACCTTTGGGAGATGATGTGGGCTCTTGAGTATGACCCTGACTTGGTCAGTGTGTACGAAGAATCTGATACTGATAGTGAGAAGGCCGAGGGATCTAAAGGGAAACCAAAGTCAACACGTCAGTGTGGGAAGTATGAGAGGGAAAACATGAAAAGTGGAGGAAAGAATTCAGAAGCACCACTCCCAATTTCTGTTTTCCTTGTTGCCAGTGTCCTGAAAGATAAGAGCTCAAAGCTACTTACAGAAGCTCGGGGTCTGGATGATGTTGTCAAGATATTGAATGACATAACTGGAAATTTAGATGCCAAAAAAGCTTGCACTGGGGCATTGAAACTCCACAAGAAATATCTAAAAAAGGTGCCCAAGAAGACATAG

Protein Analysis

433

Amino Acids

49.19

Weight (kDa)

7.94

Isoelectric Point (pI)

38.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RabGAP-TBC PF00566 147 - 316 1.7e-36 Rab-GTPase-TBC domain
RabGap-TBC_2 PF23436 195 - 314 1.5e-09 RabGAP TBC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 725
Acc36I ACCTGC 1 cut(s) 83
AccB1I GGYRCC 1 cut(s) 1282
AccB7I CCANNNNNTGG 1 cut(s) 434
AccIII TCCGGA 1 cut(s) 873
AciI CCGC 2 cut(s) 76, 849
AclWI GGATC 5 cut(s) 236, 395, 408, 809, 1024
AcsI RAATTY 5 cut(s) 174, 739, 902, 1090, 1219
AcuI CTGAAG 1 cut(s) 399
AfaI GTAC 7 cut(s) 45, 58, 411, 445, 538, 751, 980
AfiI CCNNNNNNNGG 3 cut(s) 341, 434, 967
AflIII ACRYGT 1 cut(s) 1040
AgsI TTSAA 6 cut(s) 82, 441, 713, 798, 1204, 1255
AhdI GACNNNNNGTC 1 cut(s) 168
AhlI ACTAGT 1 cut(s) 550
AjiI CACGTC 2 cut(s) 529, 1043
AjnI CCWGG 1 cut(s) 611
AjuI GAANNNNNNNTTGG 2 cut(s) 62, 94
AleI CACNNNNGTG 1 cut(s) 1045
AluBI AGCT 5 cut(s) 759, 1152, 1159, 1172, 1238
AluI AGCT 5 cut(s) 759, 1152, 1159, 1172, 1238
Alw21I GWGCWC 2 cut(s) 254, 1154
Alw26I GTCTC 1 cut(s) 833
AlwI GGATC 5 cut(s) 236, 395, 408, 809, 1024
Ama87I CYCGRG 1 cut(s) 1173
Aor13HI TCCGGA 1 cut(s) 873
AoxI GGCC 2 cut(s) 142, 1008
ApeKI GCWGC 1 cut(s) 125
ApoI RAATTY 5 cut(s) 174, 739, 902, 1090, 1219
ArsI GACNNNNNNTTYG 2 cut(s) 848, 880
Asp700I GAANNNNTTC 1 cut(s) 1090
AspLEI GCGC 1 cut(s) 726
AsuHPI GGTGA 2 cut(s) 170, 866
AvaI CYCGRG 1 cut(s) 1173
BaeGI GKGCMC 1 cut(s) 1287
BaeI ACNNNNGTAYC 2 cut(s) 612, 645
BamHI GGATCC 1 cut(s) 400
BanI GGYRCC 1 cut(s) 1282
BanII GRGCYC 2 cut(s) 949, 1154
BarI GAAGNNNNNNTAC 2 cut(s) 778, 810
Bbv12I GWGCWC 2 cut(s) 254, 1154
BbvI GCAGC 1 cut(s) 112
BccI CCATC 3 cut(s) 201, 205, 377
BceAI ACGGC 2 cut(s) 306, 587
BcgI CGANNNNNNTGC 2 cut(s) 284, 318
BciT130I CCWGG 1 cut(s) 613
BcoDI GTCTC 1 cut(s) 833
BcuI ACTAGT 1 cut(s) 550
BfaI CTAG 2 cut(s) 551, 845
BfuAI ACCTGC 1 cut(s) 83
BisI GCNGC 1 cut(s) 126
BlsI GCNGC 1 cut(s) 127
BmcAI AGTACT 1 cut(s) 411
Bme1390I CCNGG 1 cut(s) 613
BmeRI GACNNNNNGTC 1 cut(s) 168
BmeT110I CYCGRG 1 cut(s) 1173
BmgBI CACGTC 2 cut(s) 529, 1043
BmiI GGNNCC 3 cut(s) 402, 468, 1284
BmrFI CCNGG 1 cut(s) 613
BmrI ACTGGG 1 cut(s) 1254
BmsI GCATC 5 cut(s) 489, 685, 711, 867, 1216
BmuI ACTGGG 1 cut(s) 1254
BpuEI CTTGAG 2 cut(s) 789, 971
BsaJI CCNNGG 2 cut(s) 181, 1011
BsaWI WCCGGW 1 cut(s) 873
BsaXI ACNNNNNCTCC 2 cut(s) 926, 956
Bsc4I CCNNNNNNNGG 3 cut(s) 341, 434, 967
Bse1I ACTGG 6 cut(s) 153, 470, 493, 1131, 1219, 1249
BseAI TCCGGA 1 cut(s) 873
BseBI CCWGG 1 cut(s) 613
BseDI CCNNGG 2 cut(s) 181, 1011
BseGI GGATG 4 cut(s) 193, 504, 882, 1189
BseLI CCNNNNNNNGG 3 cut(s) 341, 434, 967
BseMII CTCAG 1 cut(s) 42
BseNI ACTGG 6 cut(s) 153, 470, 493, 1131, 1219, 1249
BseRI GAGGAG 1 cut(s) 222
BseSI GKGCMC 1 cut(s) 1287
BseXI GCAGC 1 cut(s) 112
BseYI CCCAGC 1 cut(s) 14
Bsh1285I CGRYCG 1 cut(s) 308
BshFI GGCC 2 cut(s) 144, 1010
BshNI GGYRCC 1 cut(s) 1282
BsiEI CGRYCG 1 cut(s) 308
BsiHKAI GWGCWC 2 cut(s) 254, 1154
BsiHKCI CYCGRG 1 cut(s) 1173
BsiSI CCGG 1 cut(s) 874
BslFI GGGAC 2 cut(s) 23, 31
BslI CCNNNNNNNGG 3 cut(s) 341, 434, 967
BsmAI GTCTC 1 cut(s) 833
BsmFI GGGAC 2 cut(s) 23, 31
BsnI GGCC 2 cut(s) 144, 1010
BsoBI CYCGRG 1 cut(s) 1173
Bsp1286I GDGCHC 4 cut(s) 254, 949, 1154, 1287
Bsp13I TCCGGA 1 cut(s) 873
Bsp143I GATC 6 cut(s) 84, 241, 400, 652, 814, 1016
BspACI CCGC 2 cut(s) 76, 849
BspANI GGCC 2 cut(s) 144, 1010
BspCNI CTCAG 1 cut(s) 43
BspEI TCCGGA 1 cut(s) 873
BspLI GGNNCC 3 cut(s) 402, 468, 1284
BspMI ACCTGC 1 cut(s) 83
BspPI GGATC 5 cut(s) 236, 395, 408, 809, 1024
BspT107I GGYRCC 1 cut(s) 1282
BsrI ACTGG 6 cut(s) 153, 470, 493, 1131, 1219, 1249
BssECI CCNNGG 2 cut(s) 181, 1011
BssMI GATC 6 cut(s) 84, 241, 400, 652, 814, 1016
Bst2UI CCWGG 1 cut(s) 613
Bst4CI ACNGT 2 cut(s) 182, 452
Bst6I CTCTTC 1 cut(s) 283
BstC8I GCNNGC 2 cut(s) 123, 1240
BstDEI CTNAG 4 cut(s) 51, 104, 782, 835
BstDSI CCRYGG 1 cut(s) 181
BstF5I GGATG 4 cut(s) 193, 504, 882, 1189
BstHHI GCGC 1 cut(s) 726
BstKTI GATC 6 cut(s) 87, 244, 403, 655, 817, 1019
BstMAI GTCTC 1 cut(s) 833
BstMBI GATC 6 cut(s) 84, 241, 400, 652, 814, 1016
BstMCI CGRYCG 1 cut(s) 308
BstMWI GCNNNNNNNGC 6 cut(s) 277, 608, 714, 723, 730, 1235
BstNI CCWGG 1 cut(s) 613
BstSCI CCNGG 1 cut(s) 611
BstSLI GKGCMC 1 cut(s) 1287
BstV1I GCAGC 1 cut(s) 112
BstX2I RGATCY 2 cut(s) 400, 1016
BstYI RGATCY 2 cut(s) 400, 1016
BsuRI GGCC 2 cut(s) 144, 1010
BtgI CCRYGG 1 cut(s) 181
BtrI CACGTC 2 cut(s) 529, 1043
BtsCI GGATG 4 cut(s) 193, 504, 882, 1189
BtsI GCAGTG 1 cut(s) 360
BtsIMutI CAGTG 7 cut(s) 360, 375, 500, 979, 1052, 1138, 1242
BveI ACCTGC 1 cut(s) 83
Cac8I GCNNGC 2 cut(s) 123, 1240
CfoI GCGC 1 cut(s) 726
CseI GACGC 1 cut(s) 20
Csp6I GTAC 7 cut(s) 44, 57, 410, 444, 537, 750, 979
CviAII CATG 3 cut(s) 463, 667, 1072
CviQI GTAC 7 cut(s) 44, 57, 410, 444, 537, 750, 979
DdeI CTNAG 4 cut(s) 51, 104, 782, 835
DpnI GATC 6 cut(s) 86, 243, 402, 654, 816, 1018
DpnII GATC 6 cut(s) 84, 241, 400, 652, 814, 1016
DriI GACNNNNNGTC 1 cut(s) 168
Eam1104I CTCTTC 1 cut(s) 283
Eam1105I GACNNNNNGTC 1 cut(s) 168
EarI CTCTTC 1 cut(s) 283
EciI GGCGGA 1 cut(s) 864
Ecl136II GAGCTC 1 cut(s) 1152
Eco24I GRGCYC 2 cut(s) 949, 1154
Eco53kI GAGCTC 1 cut(s) 1152
Eco57I CTGAAG 1 cut(s) 399
Eco88I CYCGRG 1 cut(s) 1173
EcoICRI GAGCTC 1 cut(s) 1152
EcoRI GAATTC 3 cut(s) 174, 902, 1090
EcoRII CCWGG 1 cut(s) 611
EcoT22I ATGCAT 1 cut(s) 700
EcoT38I GRGCYC 2 cut(s) 949, 1154
FaeI CATG 3 cut(s) 466, 670, 1075
FaqI GGGAC 2 cut(s) 23, 31
FatI CATG 3 cut(s) 462, 666, 1071
FauI CCCGC 1 cut(s) 83
Fnu4HI GCNGC 1 cut(s) 126
FokI GGATG 4 cut(s) 180, 511, 889, 1196
FriOI GRGCYC 2 cut(s) 949, 1154
Fsp4HI GCNGC 1 cut(s) 126
FspBI CTAG 2 cut(s) 551, 845
FspI TGCGCA 1 cut(s) 725
GlaI GCGC 1 cut(s) 725
GluI GCNGC 1 cut(s) 126
GsaI CCCAGC 1 cut(s) 18
HaeIII GGCC 2 cut(s) 144, 1010
HapII CCGG 1 cut(s) 874
HgaI GACGC 1 cut(s) 20
HhaI GCGC 1 cut(s) 726
Hin1II CATG 3 cut(s) 466, 670, 1075
Hin6I GCGC 1 cut(s) 724
HinP1I GCGC 1 cut(s) 724
HincII GTYRAC 1 cut(s) 1038
HindII GTYRAC 1 cut(s) 1038
HindIII AAGCTT 1 cut(s) 1236
HinfI GANTC 6 cut(s) 19, 29, 189, 274, 917, 986
HpaII CCGG 1 cut(s) 874
HphI GGTGA 2 cut(s) 170, 866
Hpy166II GTNNAC 3 cut(s) 57, 979, 1038
Hpy188I TCNGA 5 cut(s) 516, 746, 896, 991, 1096
Hpy8I GTNNAC 3 cut(s) 57, 979, 1038
Hpy99I CGWCG 2 cut(s) 288, 900
HpyAV CCTTC 4 cut(s) 134, 304, 686, 1000
HpyCH4III ACNGT 2 cut(s) 182, 452
HpyCH4IV ACGT 3 cut(s) 283, 528, 1042
HpyCH4V TGCA 4 cut(s) 128, 295, 698, 1242
HpyF10VI GCNNNNNNNGC 6 cut(s) 277, 608, 714, 723, 730, 1235
HpyF3I CTNAG 4 cut(s) 51, 104, 782, 835
HpySE526I ACGT 3 cut(s) 283, 528, 1042
Hsp92II CATG 3 cut(s) 466, 670, 1075
HspAI GCGC 1 cut(s) 724
Kpn2I TCCGGA 1 cut(s) 873
Kzo9I GATC 6 cut(s) 84, 241, 400, 652, 814, 1016
LmnI GCTCC 1 cut(s) 665
Lsp1109I GCAGC 1 cut(s) 112
LweI GCATC 5 cut(s) 489, 685, 711, 867, 1216
MaeI CTAG 2 cut(s) 551, 845
MaeII ACGT 3 cut(s) 283, 528, 1042
MaeIII GTNAC 2 cut(s) 472, 854
MalI GATC 6 cut(s) 86, 243, 402, 654, 816, 1018
MboI GATC 6 cut(s) 84, 241, 400, 652, 814, 1016
MboII GAAGA 4 cut(s) 300, 326, 392, 995
MflI RGATCY 2 cut(s) 400, 1016
MhlI GDGCHC 4 cut(s) 254, 949, 1154, 1287
MluCI AATT 8 cut(s) 174, 201, 739, 798, 902, 1090, 1110, 1219
MlyI GAGTC 1 cut(s) 13
MmeI TCCRAC 2 cut(s) 322, 919
MnlI CCTC 7 cut(s) 200, 728, 766, 845, 1006, 1056, 1076
Mph1103I ATGCAT 1 cut(s) 700
MroI TCCGGA 1 cut(s) 873
MroXI GAANNNNTTC 1 cut(s) 1090
MseI TTAA 1 cut(s) 167
MslI CAYNNNNRTG 2 cut(s) 703, 1045
MspI CCGG 1 cut(s) 874
MspR9I CCNGG 1 cut(s) 613
MvaI CCWGG 1 cut(s) 613
MwoI GCNNNNNNNGC 6 cut(s) 277, 608, 714, 723, 730, 1235
NdeII GATC 6 cut(s) 84, 241, 400, 652, 814, 1016
NlaIII CATG 3 cut(s) 466, 670, 1075
NlaIV GGNNCC 3 cut(s) 402, 468, 1284
NmeAIII GCCGAG 1 cut(s) 1036
NmuCI GTSAC 1 cut(s) 854
NsbI TGCGCA 1 cut(s) 725
NsiI ATGCAT 1 cut(s) 700
OliI CACNNNNGTG 1 cut(s) 1045
PcsI WCGNNNNNNNCGW 2 cut(s) 178, 283
PdmI GAANNNNTTC 1 cut(s) 1090
PfeI GAWTC 5 cut(s) 29, 189, 274, 917, 986
PflFI GACNNNGTC 1 cut(s) 968
PflMI CCANNNNNTGG 1 cut(s) 434
PkrI GCNGC 1 cut(s) 127
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
Psp124BI GAGCTC 1 cut(s) 1154
Psp6I CCWGG 1 cut(s) 611
PspFI CCCAGC 1 cut(s) 14
PspGI CCWGG 1 cut(s) 611
PspN4I GGNNCC 3 cut(s) 402, 468, 1284
PsuI RGATCY 2 cut(s) 400, 1016
PsyI GACNNNGTC 1 cut(s) 968
RsaI GTAC 7 cut(s) 45, 58, 411, 445, 538, 751, 980
RsaNI GTAC 7 cut(s) 44, 57, 410, 444, 537, 750, 979
RseI CAYNNNNRTG 2 cut(s) 703, 1045
SacI GAGCTC 1 cut(s) 1154
SaqAI TTAA 1 cut(s) 167
SatI GCNGC 1 cut(s) 126
Sau3AI GATC 6 cut(s) 84, 241, 400, 652, 814, 1016
ScaI AGTACT 1 cut(s) 411
SchI GAGTC 1 cut(s) 13
ScrFI CCNGG 1 cut(s) 613
SduI GDGCHC 4 cut(s) 254, 949, 1154, 1287
SfaNI GCATC 5 cut(s) 489, 685, 711, 867, 1216
SmiMI CAYNNNNRTG 2 cut(s) 703, 1045
SmlI CTYRAG 2 cut(s) 804, 950
SmoI CTYRAG 2 cut(s) 804, 950
SpeI ACTAGT 1 cut(s) 550
Sse9I AATT 8 cut(s) 174, 201, 739, 798, 902, 1090, 1110, 1219
SsiI CCGC 2 cut(s) 76, 849
SspMI CTAG 2 cut(s) 551, 845
SstI GAGCTC 1 cut(s) 1154
StyD4I CCNGG 1 cut(s) 611
TaaI ACNGT 2 cut(s) 182, 452
TaiI ACGT 3 cut(s) 286, 531, 1045
TaqI TCGA 3 cut(s) 172, 286, 308
TaqII GACCGA 1 cut(s) 294
TasI AATT 8 cut(s) 174, 201, 739, 798, 902, 1090, 1110, 1219
TatI WGTACW 3 cut(s) 56, 409, 443
TfiI GAWTC 5 cut(s) 29, 189, 274, 917, 986
Tru1I TTAA 1 cut(s) 167
Tru9I TTAA 1 cut(s) 167
TscAI CASTG 7 cut(s) 367, 382, 500, 979, 1052, 1138, 1249
TseFI GTSAC 1 cut(s) 854
TseI GCWGC 1 cut(s) 125
Tsp45I GTSAC 1 cut(s) 854
TspDTI ATGAA 5 cut(s) 54, 276, 702, 815, 1088
TspGWI ACGGA 1 cut(s) 491
TspRI CASTG 7 cut(s) 367, 382, 500, 979, 1052, 1138, 1249
Tth111I GACNNNGTC 1 cut(s) 968
Van91I CCANNNNNTGG 1 cut(s) 434
XapI RAATTY 5 cut(s) 174, 739, 902, 1090, 1219
XmnI GAANNNNTTC 1 cut(s) 1090
XspI CTAG 2 cut(s) 551, 845
ZrmI AGTACT 1 cut(s) 411
Zsp2I ATGCAT 1 cut(s) 700
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.