AT4G29230
NAC Family

NAC domain containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0007454
Physical Location & Seq
Forward (+)
14409772 .. 14415481
5710 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G29230.2

Sequence Viewer

Length: 1497 bp
ATGAACAAGAGTAATCCTGCTGGTTCGGTGACTGGTTCGGATATAATAGACGCCAAGATCGAAGAACATCAACTTTGTGGATCCAAGAAGTGTCCTAGCTGCGGCCACAAGCTCGAAGGCAAACCACAGGATTGGGTTGGTTTACCAGCAGGAGTGAAATTTGACCCAACGGATCAAGAATTGATAGAACATTTAGAAGCGAAAGTGTTAGCTAAAGACTTCAAATCTCACCCTCTCATTGACGAATTCATCCCAACCATTGAAGGCGAAGACGGCATTTGCTACACTCATCCCGAGAAACTTCCTGGAGTGACTAGAGATGGTTTAAGCCGACACTTCTTTCATAGACCATCAAAGGCGTACACGACGGGAACAAGAAAGCGAAGAAAGATTCAAACAGAATGTGACAATAATTTGCAAGGAAGTAGTAGCTCCGGTGAGACGAGGTGGCATAAGACCGGTAAGACAAGACCGGTTATGGTAAACGGTAAGCAAAAAGGTTGTAAGAAGATTTTGGTTTTGTATACCAATTTTGGTAAGAATCGAAAACCGGAGAAAACCAATTGGGTAATGCATCAATATCATTTGGGGACACATGAGGAAGAGAAAGAAGGAGAACTTGTTGTGTCTAAGATCTTTTATCAAACTCAGCCTAGGCAATGCAACTGGTCGTCTTCTACATCGAGCTTGAACGCTATAGGTGGTGGCGGCGGTGAAGCGAGTAGCGGCGGAGGCGGCGGAGAGTATCATATGAGGAGAGATAGTGGGACTACTAGTGGTGGGAGTTGTTCTTCGTCTAGAGAAATTATTAATGTTAATCCTCCGAATCGATCCGATGAAATAGGCGGCGTTGGTGGTGGCGTTATGGCCGTAGCAGCTGCGGCTGCGGCGGTTGCAGCTGGGCTTCCGAGTTATGCAATGGATCAGCTCAGCTTTGTTCCGTTTATGAAAAGCTTTGATGAGGTGGCGAGGAGGGAAACTCCTCAGACTGGGCACGCTACATGTGAGGATGTAATGGCAGAACAACATCGTCATCGTCATCAACCATCATCATCAACATCACATCATATGGCTCATGATCATCACCATCATCATCATCAACAACAACAACAACGGCATCATGCATTCAACATAAGCCAGCCTACACATCCGATATCAACCATTATTTCTCCATCTACTTCGCTTCACCATGCCTCCATTAATATTCTTGACGATAATCCTTATCATGTTCATAGAATCTTGCTCCCCAATGAAAATTACCAGACACAACAGCAACTACGTCAAGAAGGAGAAGAAGAACATAATGATGGGAAGATGGGAGGAAGGTCAGCTTCCGGATTGGAAGAACTCATAATGGGCTGCACTTCTTCTACCACTCATCATGATGTAAAAGATGGGTCATCATCAATGGGGAACCAACAAGAAGCAGAATGGTTGAAGTACTCAACGTTTTGGCCAGCCCCTGACTCTTCTGACAACCAAGATCATCATGGGTAA

Protein Analysis

498

Amino Acids

54.87

Weight (kDa)

6.54

Isoelectric Point (pI)

58.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 48 - 195 4e-25 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 524
AccIII TCCGGA 1 cut(s) 1334
AclI AACGTT 1 cut(s) 1448
AclWI GGATC 5 cut(s) 75, 88, 180, 825, 930
AcoI YGGCCR 3 cut(s) 103, 867, 1454
AcsI RAATTY 2 cut(s) 158, 245
AcyI GRCGYC 1 cut(s) 51
AfaI GTAC 2 cut(s) 362, 1442
AfiI CCNNNNNNNGG 2 cut(s) 101, 989
AflIII ACRYGT 1 cut(s) 1001
AgeI ACCGGT 2 cut(s) 458, 472
AgsI TTSAA 6 cut(s) 223, 263, 395, 691, 1129, 1438
AhlI ACTAGT 1 cut(s) 773
AjnI CCWGG 1 cut(s) 304
Alw26I GTCTC 1 cut(s) 434
AlwI GGATC 5 cut(s) 75, 88, 180, 825, 930
AlwNI CAGNNNCTG 1 cut(s) 1463
Ama87I CYCGRG 1 cut(s) 293
Aor13HI TCCGGA 1 cut(s) 1334
AoxI GGCC 3 cut(s) 103, 867, 1454
ApeKI GCWGC 6 cut(s) 99, 875, 878, 884, 896, 1359
ApoI RAATTY 2 cut(s) 158, 245
AseI ATTAAT 2 cut(s) 810, 1200
AsiGI ACCGGT 2 cut(s) 458, 472
AspA2I CCTAGG 1 cut(s) 653
AsuHPI GGTGA 6 cut(s) 40, 221, 449, 725, 1076, 1178
AvaI CYCGRG 1 cut(s) 293
AvrII CCTAGG 1 cut(s) 653
BaeGI GKGCMC 1 cut(s) 996
BalI TGGCCA 1 cut(s) 1456
BamHI GGATCC 1 cut(s) 80
BbsI GAAGAC 2 cut(s) 276, 666
BbvI GCAGC 6 cut(s) 86, 865, 871, 887, 908, 1346
BccI CCATC 8 cut(s) 314, 358, 1054, 1095, 1180, 1301, 1309, 1388
BceAI ACGGC 3 cut(s) 289, 854, 1130
BciT130I CCWGG 1 cut(s) 306
BclI TGATCA 1 cut(s) 1078
BcoDI GTCTC 1 cut(s) 434
BcuI ACTAGT 1 cut(s) 773
BfaI CTAG 5 cut(s) 96, 315, 654, 774, 798
BfmI CTRYAG 1 cut(s) 696
BglII AGATCT 1 cut(s) 633
BlnI CCTAGG 1 cut(s) 653
BlpI GCTNAGC 1 cut(s) 929
BmcAI AGTACT 1 cut(s) 1442
Bme1390I CCNGG 1 cut(s) 306
BmeT110I CYCGRG 1 cut(s) 293
BmiI GGNNCC 2 cut(s) 82, 1415
BmrFI CCNGG 1 cut(s) 306
BmrI ACTGGG 1 cut(s) 999
BmsI GCATC 2 cut(s) 583, 1126
BmuI ACTGGG 1 cut(s) 999
BpiI GAAGAC 2 cut(s) 276, 666
BplI GAGNNNNNCTC 2 cut(s) 964, 996
BpmI CTGGAG 1 cut(s) 327
Bpu1102I GCTNAGC 1 cut(s) 929
Bsa29I ATCGAT 1 cut(s) 829
BsaHI GRCGYC 1 cut(s) 51
BsaJI CCNNGG 1 cut(s) 653
BsaWI WCCGGW 5 cut(s) 434, 458, 472, 550, 1334
BsaXI ACNNNNNCTCC 6 cut(s) 606, 636, 748, 778, 1178, 1208
Bsc4I CCNNNNNNNGG 2 cut(s) 101, 989
Bse118I RCCGGY 2 cut(s) 458, 472
Bse1I ACTGG 3 cut(s) 37, 671, 994
Bse3DI GCAATG 2 cut(s) 665, 924
BseAI TCCGGA 1 cut(s) 1334
BseBI CCWGG 1 cut(s) 306
BseCI ATCGAT 1 cut(s) 829
BseDI CCNNGG 1 cut(s) 653
BseGI GGATG 4 cut(s) 249, 289, 1015, 1147
BseLI CCNNNNNNNGG 2 cut(s) 101, 989
BseMI GCAATG 2 cut(s) 665, 924
BseMII CTCAG 3 cut(s) 662, 943, 998
BseNI ACTGG 3 cut(s) 37, 671, 994
BseRI GAGGAG 3 cut(s) 769, 972, 985
BseSI GKGCMC 1 cut(s) 996
BseXI GCAGC 6 cut(s) 86, 865, 871, 887, 908, 1346
BseYI CCCAGC 1 cut(s) 899
BsgI GTGCAG 1 cut(s) 1345
BshFI GGCC 3 cut(s) 105, 869, 1456
BshTI ACCGGT 2 cut(s) 458, 472
BshVI ATCGAT 1 cut(s) 829
BsiHKCI CYCGRG 1 cut(s) 293
BsiSI CCGG 5 cut(s) 435, 459, 473, 551, 1335
BslFI GGGAC 2 cut(s) 604, 781
BslI CCNNNNNNNGG 2 cut(s) 101, 989
BsmAI GTCTC 1 cut(s) 434
BsmBI CGTCTC 1 cut(s) 434
BsmFI GGGAC 2 cut(s) 604, 781
BsmI GAATGC 1 cut(s) 1124
BsnI GGCC 3 cut(s) 105, 869, 1456
BsoBI CYCGRG 1 cut(s) 293
Bsp1286I GDGCHC 1 cut(s) 996
Bsp13I TCCGGA 1 cut(s) 1334
Bsp143I GATC 8 cut(s) 57, 80, 172, 633, 830, 922, 1078, 1483
Bsp1720I GCTNAGC 1 cut(s) 929
BspANI GGCC 3 cut(s) 105, 869, 1456
BspCNI CTCAG 3 cut(s) 661, 942, 997
BspDI ATCGAT 1 cut(s) 829
BspEI TCCGGA 1 cut(s) 1334
BspHI TCATGA 2 cut(s) 1075, 1381
BspLI GGNNCC 2 cut(s) 82, 1415
BspPI GGATC 5 cut(s) 75, 88, 180, 825, 930
BsrDI GCAATG 2 cut(s) 665, 924
BsrFI RCCGGY 2 cut(s) 458, 472
BsrI ACTGG 3 cut(s) 37, 671, 994
BssAI RCCGGY 2 cut(s) 458, 472
BssECI CCNNGG 1 cut(s) 653
BssMI GATC 8 cut(s) 57, 80, 172, 633, 830, 922, 1078, 1483
BssNAI GTATAC 1 cut(s) 525
BssNI GRCGYC 1 cut(s) 51
BssT1I CCWWGG 1 cut(s) 653
Bst1107I GTATAC 1 cut(s) 525
Bst2UI CCWGG 1 cut(s) 306
Bst4CI ACNGT 1 cut(s) 488
Bst6I CTCTTC 2 cut(s) 597, 1474
BstACI GRCGYC 1 cut(s) 51
BstC8I GCNNGC 3 cut(s) 996, 1139, 1458
BstDEI CTNAG 4 cut(s) 630, 648, 929, 984
BstF5I GGATG 4 cut(s) 249, 289, 1015, 1147
BstKTI GATC 8 cut(s) 60, 83, 175, 636, 833, 925, 1081, 1486
BstMAI GTCTC 1 cut(s) 434
BstMBI GATC 8 cut(s) 57, 80, 172, 633, 830, 922, 1078, 1483
BstMWI GCNNNNNNNGC 9 cut(s) 273, 732, 735, 875, 881, 884, 887, 893, 896
BstNI CCWGG 1 cut(s) 306
BstNSI RCATGY 1 cut(s) 1005
BstSCI CCNGG 1 cut(s) 304
BstSFI CTRYAG 1 cut(s) 696
BstSLI GKGCMC 1 cut(s) 996
BstV1I GCAGC 6 cut(s) 86, 865, 871, 887, 908, 1346
BstV2I GAAGAC 2 cut(s) 276, 666
BstX2I RGATCY 2 cut(s) 80, 633
BstXI CCANNNNNNTGG 1 cut(s) 132
BstYI RGATCY 2 cut(s) 80, 633
BstZ17I GTATAC 1 cut(s) 525
Bsu15I ATCGAT 1 cut(s) 829
BsuRI GGCC 3 cut(s) 105, 869, 1456
BsuTUI ATCGAT 1 cut(s) 829
BtsCI GGATG 4 cut(s) 249, 289, 1015, 1147
Cac8I GCNNGC 3 cut(s) 996, 1139, 1458
CaiI CAGNNNCTG 1 cut(s) 1463
CciI TCATGA 2 cut(s) 1075, 1381
Cfr10I RCCGGY 2 cut(s) 458, 472
ClaI ATCGAT 1 cut(s) 829
CseI GACGC 1 cut(s) 59
Csp6I GTAC 2 cut(s) 361, 1441
CspAI ACCGGT 2 cut(s) 458, 472
CviAII CATG 8 cut(s) 596, 1002, 1076, 1121, 1190, 1226, 1382, 1490
CviQI GTAC 2 cut(s) 361, 1441
DdeI CTNAG 4 cut(s) 630, 648, 929, 984
DpnI GATC 8 cut(s) 59, 82, 174, 635, 832, 924, 1080, 1485
DpnII GATC 8 cut(s) 57, 80, 172, 633, 830, 922, 1078, 1483
EaeI YGGCCR 3 cut(s) 103, 867, 1454
Eam1104I CTCTTC 2 cut(s) 597, 1474
EarI CTCTTC 2 cut(s) 597, 1474
EciI GGCGGA 2 cut(s) 744, 753
Eco130I CCWWGG 1 cut(s) 653
Eco32I GATATC 1 cut(s) 1155
Eco88I CYCGRG 1 cut(s) 293
EcoRI GAATTC 1 cut(s) 245
EcoRII CCWGG 1 cut(s) 304
EcoRV GATATC 1 cut(s) 1155
EcoT14I CCWWGG 1 cut(s) 653
EcoT22I ATGCAT 2 cut(s) 576, 1126
ErhI CCWWGG 1 cut(s) 653
Esp3I CGTCTC 1 cut(s) 434
FaeI CATG 8 cut(s) 599, 1005, 1079, 1124, 1193, 1229, 1385, 1493
FalI AAGNNNNNCTT 4 cut(s) 603, 635, 1315, 1347
FaqI GGGAC 2 cut(s) 604, 781
FatI CATG 8 cut(s) 595, 1001, 1075, 1120, 1189, 1225, 1381, 1489
FauNDI CATATG 2 cut(s) 750, 1068
FbaI TGATCA 1 cut(s) 1078
FblI GTMKAC 1 cut(s) 524
FokI GGATG 4 cut(s) 236, 276, 1022, 1134
FspBI CTAG 5 cut(s) 96, 315, 654, 774, 798
GsaI CCCAGC 1 cut(s) 903
GsuI CTGGAG 1 cut(s) 327
HaeIII GGCC 3 cut(s) 105, 869, 1456
HapII CCGG 5 cut(s) 435, 459, 473, 551, 1335
HgaI GACGC 1 cut(s) 59
Hin1I GRCGYC 1 cut(s) 51
Hin1II CATG 8 cut(s) 599, 1005, 1079, 1124, 1193, 1229, 1385, 1493
HindIII AAGCTT 1 cut(s) 952
HinfI GANTC 5 cut(s) 391, 541, 826, 1236, 1466
HpaII CCGG 5 cut(s) 435, 459, 473, 551, 1335
HphI GGTGA 6 cut(s) 40, 221, 449, 725, 1076, 1178
Hpy166II GTNNAC 4 cut(s) 143, 363, 484, 525
Hpy188I TCNGA 7 cut(s) 40, 825, 835, 909, 987, 1152, 1474
Hpy188III TCNNGA 8 cut(s) 176, 293, 798, 1076, 1208, 1283, 1335, 1382
Hpy8I GTNNAC 4 cut(s) 143, 363, 484, 525
Hpy99I CGWCG 1 cut(s) 370
HpyAV CCTTC 5 cut(s) 110, 257, 605, 1280, 1317
HpyCH4III ACNGT 1 cut(s) 488
HpyCH4IV ACGT 2 cut(s) 1279, 1448
HpyCH4V TGCA 7 cut(s) 418, 574, 663, 896, 917, 1124, 1362
HpyF10VI GCNNNNNNNGC 9 cut(s) 273, 732, 735, 875, 881, 884, 887, 893, 896
HpyF3I CTNAG 4 cut(s) 630, 648, 929, 984
HpySE526I ACGT 2 cut(s) 1279, 1448
Hsp92I GRCGYC 1 cut(s) 51
Hsp92II CATG 8 cut(s) 599, 1005, 1079, 1124, 1193, 1229, 1385, 1493
Kpn2I TCCGGA 1 cut(s) 1334
Ksp22I TGATCA 1 cut(s) 1078
Kzo9I GATC 8 cut(s) 57, 80, 172, 633, 830, 922, 1078, 1483
LmnI GCTCC 2 cut(s) 437, 1248
Lsp1109I GCAGC 6 cut(s) 86, 865, 871, 887, 908, 1346
LweI GCATC 2 cut(s) 583, 1126
MaeI CTAG 5 cut(s) 96, 315, 654, 774, 798
MaeII ACGT 2 cut(s) 1279, 1448
MaeIII GTNAC 3 cut(s) 28, 310, 404
MalI GATC 8 cut(s) 59, 82, 174, 635, 832, 924, 1080, 1485
MboI GATC 8 cut(s) 57, 80, 172, 633, 830, 922, 1078, 1483
MfeI CAATTG 1 cut(s) 562
MflI RGATCY 2 cut(s) 80, 633
MhlI GDGCHC 1 cut(s) 996
MlsI TGGCCA 1 cut(s) 1456
MluCI AATT 8 cut(s) 158, 179, 245, 412, 529, 562, 804, 1255
MluNI TGGCCA 1 cut(s) 1456
MlyI GAGTC 1 cut(s) 1460
Mox20I TGGCCA 1 cut(s) 1456
Mph1103I ATGCAT 2 cut(s) 576, 1126
MroI TCCGGA 1 cut(s) 1334
MscI TGGCCA 1 cut(s) 1456
MseI TTAA 4 cut(s) 326, 810, 816, 1200
MslI CAYNNNNRTG 2 cut(s) 1305, 1383
Msp20I TGGCCA 1 cut(s) 1456
MspA1I CMGCKG 2 cut(s) 878, 899
MspI CCGG 5 cut(s) 435, 459, 473, 551, 1335
MspR9I CCNGG 1 cut(s) 306
MunI CAATTG 1 cut(s) 562
Mva1269I GAATGC 1 cut(s) 1124
MvaI CCWGG 1 cut(s) 306
MwoI GCNNNNNNNGC 9 cut(s) 273, 732, 735, 875, 881, 884, 887, 893, 896
NdeI CATATG 2 cut(s) 750, 1068
NdeII GATC 8 cut(s) 57, 80, 172, 633, 830, 922, 1078, 1483
NlaIII CATG 8 cut(s) 599, 1005, 1079, 1124, 1193, 1229, 1385, 1493
NlaIV GGNNCC 2 cut(s) 82, 1415
NmuCI GTSAC 3 cut(s) 28, 310, 404
NsiI ATGCAT 2 cut(s) 576, 1126
NspI RCATGY 1 cut(s) 1005
PagI TCATGA 2 cut(s) 1075, 1381
PciI ACATGT 1 cut(s) 1001
PcsI WCGNNNNNNNCGW 1 cut(s) 57
PctI GAATGC 1 cut(s) 1124
PfeI GAWTC 4 cut(s) 391, 541, 826, 1236
PfoI TCCNGGA 1 cut(s) 304
PinAI ACCGGT 2 cut(s) 458, 472
PleI GAGTC 1 cut(s) 1460
PpsI GAGTC 1 cut(s) 1460
PscI ACATGT 1 cut(s) 1001
PshBI ATTAAT 2 cut(s) 810, 1200
Psp1406I AACGTT 1 cut(s) 1448
Psp6I CCWGG 1 cut(s) 304
PspFI CCCAGC 1 cut(s) 899
PspGI CCWGG 1 cut(s) 304
PspN4I GGNNCC 2 cut(s) 82, 1415
PstNI CAGNNNCTG 1 cut(s) 1463
PsuI RGATCY 2 cut(s) 80, 633
PvuII CAGCTG 2 cut(s) 878, 899
RsaI GTAC 2 cut(s) 362, 1442
RsaNI GTAC 2 cut(s) 361, 1441
RseI CAYNNNNRTG 2 cut(s) 1305, 1383
SaqAI TTAA 4 cut(s) 326, 810, 816, 1200
Sau3AI GATC 8 cut(s) 57, 80, 172, 633, 830, 922, 1078, 1483
ScaI AGTACT 1 cut(s) 1442
SchI GAGTC 1 cut(s) 1460
ScrFI CCNGG 1 cut(s) 306
SduI GDGCHC 1 cut(s) 996
SfaNI GCATC 2 cut(s) 583, 1126
SfcI CTRYAG 1 cut(s) 696
SmiMI CAYNNNNRTG 2 cut(s) 1305, 1383
SpeI ACTAGT 1 cut(s) 773
Sse9I AATT 8 cut(s) 158, 179, 245, 412, 529, 562, 804, 1255
SspI AATATT 1 cut(s) 1204
SspMI CTAG 5 cut(s) 96, 315, 654, 774, 798
StyD4I CCNGG 1 cut(s) 304
StyI CCWWGG 1 cut(s) 653
TaaI ACNGT 1 cut(s) 488
TaiI ACGT 2 cut(s) 1282, 1451
TaqI TCGA 5 cut(s) 60, 114, 544, 683, 829
TasI AATT 8 cut(s) 158, 179, 245, 412, 529, 562, 804, 1255
TatI WGTACW 1 cut(s) 1440
TauI GCSGC 7 cut(s) 105, 711, 729, 738, 849, 884, 890
TfiI GAWTC 4 cut(s) 391, 541, 826, 1236
Tru1I TTAA 4 cut(s) 326, 810, 816, 1200
Tru9I TTAA 4 cut(s) 326, 810, 816, 1200
TseFI GTSAC 3 cut(s) 28, 310, 404
TseI GCWGC 6 cut(s) 99, 875, 878, 884, 896, 1359
Tsp45I GTSAC 3 cut(s) 28, 310, 404
TspDTI ATGAA 7 cut(s) 17, 238, 332, 852, 962, 1220, 1266
TspGWI ACGGA 2 cut(s) 185, 930
VspI ATTAAT 2 cut(s) 810, 1200
XapI RAATTY 2 cut(s) 158, 245
XbaI TCTAGA 1 cut(s) 797
XceI RCATGY 1 cut(s) 1005
XcmI CCANNNNNNNNNTGG 1 cut(s) 1487
XmaJI CCTAGG 1 cut(s) 653
XmiI GTMKAC 1 cut(s) 524
XspI CTAG 5 cut(s) 96, 315, 654, 774, 798
ZrmI AGTACT 1 cut(s) 1442
Zsp2I ATGCAT 2 cut(s) 576, 1126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.