Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0007454

Physical Location & Seq

Genomic Coordinates Reverse (-)

3640012 .. 3644165

Gene Structure 4154 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g05440.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1443 bp

ATGAATAAGAGTAATTTGGGGTCCATCAGAAGTTCTGATCTCATTGATGCAAAGCTTGAAGAGCATCAGATGTGCGGATCCAAGCAGTGTCCCGGTTGTGGACACAAACTCGAAGGAAAGCCGGACTGGTTAGGTCTACCAGCAGGAGTGAAATTTGATCCAACAGACCAAGAACTAATTGAACACCTTGAAGCAAAGGTAGAAGCCAAAAACTCCAAGTCTCACCCTTTGATTGATGAATTCATCCCTACAATTGAAGGAGAAGATGGAATTTGTTACACCCATCCTGAAAAACTTCCAGGAGTCACAAGAGATGGCTTGAGCAGGCACTTCTTCCATAGACCTTCAAAAGCCTACACAACTGGGACAAGAAAGAGAAGAAAAATCCAAACAGAATGTGACTTGCAAGGTGGGGAAACAAGATGGCACAAGACAGGCAAGACCAGGCCAGTCATGGTGAATGGAAAACAAAAAGGGTGCAAGAAAATTCTAGTCCTCTACACCAACTTTGGCAAAAACCGAAAACCCGAAAAGACGAATTGGGTGATGCACCAATACCATCTTGGGCAGCATGAGGAGGAGAAAGAAGGAGAGCTTGTGGTGTCAAAGATATTCTATCAGACTCAGCCAAGGCAATGCAACTGGTCTGATAGAGCGAGTGCAACAACTGGTGAAGGAAGCAGTGATATTATGGCTACTAATAGCAGAAGAGATAGTGGGAGTGGGAGTAGTTCTTCTAAGGAAATATTACCTTCTCATCCTCATAGAGATCATGACCAAATGGCTGCAACAGCAGCAGCTGCGGTTGCAGCTGCTGCTCCAATCTCAAGCTACAGTGGGATTGACATTCATCAGTTGAAGTCAGATCACTTCAGCTTTGCCCCCTTCAGAAAAAGCTTTGATGAGGTGGGGATAGGAGGAGAGGCTTCAACTGCAAGGGAAGGACTGGCATCTGGCACGTGCGAAGAGATACGAGAGCACCACCAGAGATCAGTACCAGTACAGCCTCATCATCACCATCATCATCATATAAGCCATGAACTAGTATCTGATCATCACGAGCAGCAGCAGCAACTGCATCACCATCAACAAATTGCAACAGCTGCAGCTTTCCACATCAGCCGCCCTTCACATCCCATTTCCACCATCATCTCTCCACCTCCTCTCCACCACACGTCCATCATTCTTGATCAGGACTCCTACTCCCGGTTGATGCTCCAAAACGAAAATTTCCAGGCGCAGCAACAGCAGCAACACCCCCACCACCAACAGCATCATAAAATGGGAGCTAGGTCTGCATCTGGTTTGGAGGAACTAATAATGGGCTGCACTTCTAGCAGTAGTGATATCAAAGAAGAGTCATCGATGCCAAACCCTCAAGAGGCAGAGTGGATGAAGTACTCCTTCTGGCCTGACCCTGACAACCCAGATCATCATGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000077 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0006950 GO:0006974 GO:0008150 GO:0009314 GO:0009628 GO:0009889 GO:0009987 GO:0010212 GO:0010332 GO:0010468 GO:0010556 GO:0010564 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031570 GO:0033043 GO:0033554 GO:0040020 GO:0043565 GO:0045786 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051252 GO:0051445 GO:0051716 GO:0051726 GO:0051783 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

481

Amino Acids

53.84

Weight (kDa)

6.61

Isoelectric Point (pI)

51.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007454)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29230 AT4G29230 AT4G29230
fragaria_vesca	FvH4_1g06530 FvH4_1g06530
malus_domestica	MD02G1068700.v1.1 MD15G1200200.v1.1
prunus_persica	Prupe.7G217000_v2.0.a1 Prupe.7G217000_v2.0.a1 Prupe.7G217000_v2.0.a1
pyrus_communis	pycom02g05440 pycom15g17790
rosa_chinensis	RchiOBHm_Chr2g0092281
rosa_laevigata	RLG00000016293
rosa_multiflora	Rmu_sc0003289.1_g000022
rosa_roxburghii	Rroxscaffold_2G00149300
rosa_rugosa	Rorug02G0024400 Rorug02G0024500 Rorug02G0024600 Rorug02G0024600
rosa_samantha	Rh2AG070300 Rh2BG069800 Rh2CG071000 Rh2DG068800
rosa_wichuraiana	Rw2G006200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	136
AciI	CCGC	3 cut(s)	75, 803, 1123
AclWI	GGATC	3 cut(s)	72, 85, 152
AcsI	RAATTY	5 cut(s)	152, 239, 270, 486, 1228
AcuI	CTGAAG	2 cut(s)	856, 871
AcvI	CACGTG	1 cut(s)	960
AfaI	GTAC	3 cut(s)	996, 1002, 1400
AfiI	CCNNNNNNNGG	3 cut(s)	98, 1206, 1381
AflIII	ACRYGT	1 cut(s)	1173
AgsI	TTSAA	7 cut(s)	59, 182, 191, 257, 348, 859, 930
AhlI	ACTAGT	1 cut(s)	1042
AjiI	CACGTC	1 cut(s)	1176
AjnI	CCWGG	3 cut(s)	298, 443, 1233
Alw21I	GWGCWC	1 cut(s)	981
Alw26I	GTCTC	1 cut(s)	225
AlwI	GGATC	3 cut(s)	72, 85, 152
AlwNI	CAGNNNCTG	3 cut(s)	800, 815, 1075
AoxI	GGCC	2 cut(s)	446, 1409
ApoI	RAATTY	5 cut(s)	152, 239, 270, 486, 1228
Asp700I	GAANNNNTTC	1 cut(s)	294
AspLEI	GCGC	1 cut(s)	1240
AspS9I	GGNCC	1 cut(s)	21
AsuC2I	CCSGG	2 cut(s)	93, 1207
AsuHPI	GGTGA	6 cut(s)	215, 469, 556, 683, 1007, 1073
AvaII	GGWCC	1 cut(s)	21
BamHI	GGATCC	1 cut(s)	77
BauI	CACGAG	1 cut(s)	1058
BbrPI	CACGTG	1 cut(s)	960
Bbv12I	GWGCWC	1 cut(s)	981
BciT130I	CCWGG	3 cut(s)	300, 445, 1235
BclI	TGATCA	2 cut(s)	1051, 1189
BcnI	CCSGG	2 cut(s)	93, 1207
BcoDI	GTCTC	1 cut(s)	225
BcuI	ACTAGT	1 cut(s)	1042
BfaI	CTAG	4 cut(s)	491, 1043, 1290, 1335
BfmI	CTRYAG	2 cut(s)	832, 1104
BmcAI	AGTACT	1 cut(s)	1400
Bme1390I	CCNGG	5 cut(s)	93, 300, 445, 1207, 1235
Bme18I	GGWCC	1 cut(s)	21
BmgBI	CACGTC	1 cut(s)	1176
BmgT120I	GGNCC	1 cut(s)	21
BmiI	GGNNCC	2 cut(s)	22, 79
BmrFI	CCNGG	5 cut(s)	93, 300, 445, 1207, 1235
BmrI	ACTGGG	1 cut(s)	372
BmsI	GCATC	9 cut(s)	37, 73, 537, 959, 1087, 1203, 1282, 1307, 1356
BmuI	ACTGGG	1 cut(s)	372
BpuEI	CTTGAG	3 cut(s)	340, 811, 1362
BpuMI	CCSGG	2 cut(s)	93, 1207
Bsa29I	ATCGAT	1 cut(s)	1364
BsaAI	YACGTR	1 cut(s)	960
BsaJI	CCNNGG	1 cut(s)	629
BsaXI	ACNNNNNCTCC	8 cut(s)	582, 612, 712, 742, 1149, 1179, 1187, 1217
Bsc4I	CCNNNNNNNGG	3 cut(s)	98, 1206, 1381
Bse1I	ACTGG	7 cut(s)	131, 367, 449, 647, 673, 951, 998
Bse3DI	GCAATG	1 cut(s)	641
BseBI	CCWGG	3 cut(s)	300, 445, 1235
BseCI	ATCGAT	1 cut(s)	1364
BseDI	CCNNGG	1 cut(s)	629
BseGI	GGATG	5 cut(s)	243, 283, 757, 1132, 1398
BseLI	CCNNNNNNNGG	3 cut(s)	98, 1206, 1381
BseMI	GCAATG	1 cut(s)	641
BseMII	CTCAG	1 cut(s)	638
BseNI	ACTGG	7 cut(s)	131, 367, 449, 647, 673, 951, 998
BseRI	GAGGAG	4 cut(s)	590, 593, 933, 1152
BsgI	GTGCAG	1 cut(s)	1312
BshFI	GGCC	2 cut(s)	448, 1411
BshVI	ATCGAT	1 cut(s)	1364
BsiHKAI	GWGCWC	1 cut(s)	981
BsiSI	CCGG	3 cut(s)	93, 122, 1207
BslFI	GGGAC	2 cut(s)	75, 379
BslI	CCNNNNNNNGG	3 cut(s)	98, 1206, 1381
BsmAI	GTCTC	1 cut(s)	225
BsmFI	GGGAC	2 cut(s)	75, 379
BsnI	GGCC	2 cut(s)	448, 1411
Bsp1286I	GDGCHC	1 cut(s)	981
Bsp143I	GATC	9 cut(s)	37, 77, 157, 769, 865, 989, 1051, 1189, 1429
BspACI	CCGC	3 cut(s)	75, 803, 1123
BspANI	GGCC	2 cut(s)	448, 1411
BspCNI	CTCAG	1 cut(s)	637
BspDI	ATCGAT	1 cut(s)	1364
BspHI	TCATGA	1 cut(s)	772
BspLI	GGNNCC	2 cut(s)	22, 79
BspMAI	CTGCAG	1 cut(s)	1108
BspPI	GGATC	3 cut(s)	72, 85, 152
BspQI	GCTCTTC	1 cut(s)	54
BsrDI	GCAATG	1 cut(s)	641
BsrI	ACTGG	7 cut(s)	131, 367, 449, 647, 673, 951, 998
BssECI	CCNNGG	1 cut(s)	629
BssMI	GATC	9 cut(s)	37, 77, 157, 769, 865, 989, 1051, 1189, 1429
BssSI	CACGAG	1 cut(s)	1058
BssT1I	CCWWGG	1 cut(s)	629
Bst2BI	CACGAG	1 cut(s)	1058
Bst2UI	CCWGG	3 cut(s)	300, 445, 1235
Bst4CI	ACNGT	1 cut(s)	836
Bst6I	CTCTTC	4 cut(s)	54, 703, 960, 1350
BstAPI	GCANNNNNTGC	4 cut(s)	800, 815, 1075, 1103
BstBAI	YACGTR	1 cut(s)	960
BstC8I	GCNNGC	1 cut(s)	326
BstDEI	CTNAG	2 cut(s)	624, 738
BstF5I	GGATG	5 cut(s)	243, 283, 757, 1132, 1398
BstHHI	GCGC	1 cut(s)	1240
BstKTI	GATC	9 cut(s)	40, 80, 160, 772, 868, 992, 1054, 1192, 1432
BstMAI	GTCTC	1 cut(s)	225
BstMBI	GATC	9 cut(s)	37, 77, 157, 769, 865, 989, 1051, 1189, 1429
BstNI	CCWGG	3 cut(s)	300, 445, 1235
BstSCI	CCNGG	5 cut(s)	91, 298, 443, 1205, 1233
BstSFI	CTRYAG	2 cut(s)	832, 1104
BstX2I	RGATCY	1 cut(s)	77
BstYI	RGATCY	1 cut(s)	77
Bsu15I	ATCGAT	1 cut(s)	1364
BsuRI	GGCC	2 cut(s)	448, 1411
BsuTUI	ATCGAT	1 cut(s)	1364
BtrI	CACGTC	1 cut(s)	1176
BtsCI	GGATG	5 cut(s)	243, 283, 757, 1132, 1398
BtsI	GCAGTG	2 cut(s)	92, 688
BtsIMutI	CAGTG	3 cut(s)	92, 688, 841
Cac8I	GCNNGC	1 cut(s)	326
CaiI	CAGNNNCTG	3 cut(s)	800, 815, 1075
CciI	TCATGA	1 cut(s)	772
CfoI	GCGC	1 cut(s)	1240
Cfr13I	GGNCC	1 cut(s)	21
ClaI	ATCGAT	1 cut(s)	1364
Csp6I	GTAC	3 cut(s)	995, 1001, 1399
CviAII	CATG	5 cut(s)	454, 572, 773, 1037, 1436
CviQI	GTAC	3 cut(s)	995, 1001, 1399
DdeI	CTNAG	2 cut(s)	624, 738
DpnI	GATC	9 cut(s)	39, 79, 159, 771, 867, 991, 1053, 1191, 1431
DpnII	GATC	9 cut(s)	37, 77, 157, 769, 865, 989, 1051, 1189, 1429
Eam1104I	CTCTTC	4 cut(s)	54, 703, 960, 1350
EarI	CTCTTC	4 cut(s)	54, 703, 960, 1350
Eco130I	CCWWGG	1 cut(s)	629
Eco32I	GATATC	1 cut(s)	1348
Eco47I	GGWCC	1 cut(s)	21
Eco57I	CTGAAG	2 cut(s)	856, 871
Eco72I	CACGTG	1 cut(s)	960
EcoRI	GAATTC	1 cut(s)	239
EcoRII	CCWGG	3 cut(s)	298, 443, 1233
EcoRV	GATATC	1 cut(s)	1348
EcoT14I	CCWWGG	1 cut(s)	629
ErhI	CCWWGG	1 cut(s)	629
FaeI	CATG	5 cut(s)	457, 575, 776, 1040, 1439
FalI	AAGNNNNNCTT	4 cut(s)	579, 611, 1388, 1420
FaqI	GGGAC	2 cut(s)	75, 379
FatI	CATG	5 cut(s)	453, 571, 772, 1036, 1435
FbaI	TGATCA	2 cut(s)	1051, 1189
FblI	GTMKAC	1 cut(s)	136
FokI	GGATG	5 cut(s)	230, 270, 744, 1119, 1405
FspBI	CTAG	4 cut(s)	491, 1043, 1290, 1335
GlaI	GCGC	1 cut(s)	1239
HaeIII	GGCC	2 cut(s)	448, 1411
HapII	CCGG	3 cut(s)	93, 122, 1207
HhaI	GCGC	1 cut(s)	1240
Hin1II	CATG	5 cut(s)	457, 575, 776, 1040, 1439
Hin6I	GCGC	1 cut(s)	1238
HinP1I	GCGC	1 cut(s)	1238
HindIII	AAGCTT	2 cut(s)	53, 895
HinfI	GANTC	4 cut(s)	303, 622, 1196, 1358
HpaII	CCGG	3 cut(s)	93, 122, 1207
HphI	GGTGA	6 cut(s)	215, 469, 556, 683, 1007, 1073
Hpy166II	GTNNAC	2 cut(s)	101, 137
Hpy188I	TCNGA	8 cut(s)	29, 37, 69, 621, 649, 865, 890, 1051
Hpy188III	TCNNGA	6 cut(s)	287, 773, 1058, 1187, 1193, 1379
Hpy8I	GTNNAC	2 cut(s)	101, 137
HpyCH4III	ACNGT	1 cut(s)	836
HpyCH4IV	ACGT	2 cut(s)	959, 1175
HpyF3I	CTNAG	2 cut(s)	624, 738
HpySE526I	ACGT	2 cut(s)	959, 1175
Hsp92II	CATG	5 cut(s)	457, 575, 776, 1040, 1439
HspAI	GCGC	1 cut(s)	1238
Ksp22I	TGATCA	2 cut(s)	1051, 1189
Kzo9I	GATC	9 cut(s)	37, 77, 157, 769, 865, 989, 1051, 1189, 1429
LguI	GCTCTTC	1 cut(s)	54
LmnI	GCTCC	3 cut(s)	823, 1221, 1286
LweI	GCATC	9 cut(s)	37, 73, 537, 959, 1087, 1203, 1282, 1307, 1356
MaeI	CTAG	4 cut(s)	491, 1043, 1290, 1335
MaeII	ACGT	2 cut(s)	959, 1175
MaeIII	GTNAC	3 cut(s)	275, 304, 398
MalI	GATC	9 cut(s)	39, 79, 159, 771, 867, 991, 1053, 1191, 1431
MboI	GATC	9 cut(s)	37, 77, 157, 769, 865, 989, 1051, 1189, 1429
MboII	GAAGA	8 cut(s)	71, 275, 325, 390, 720, 726, 977, 1367
MfeI	CAATTG	1 cut(s)	252
MflI	RGATCY	1 cut(s)	77
MhlI	GDGCHC	1 cut(s)	981
MlyI	GAGTC	4 cut(s)	312, 616, 1190, 1367
MmeI	TCCRAC	1 cut(s)	185
MroXI	GAANNNNTTC	1 cut(s)	294
MspA1I	CMGCKG	3 cut(s)	800, 812, 1103
MspI	CCGG	3 cut(s)	93, 122, 1207
MspR9I	CCNGG	5 cut(s)	93, 300, 445, 1207, 1235
MunI	CAATTG	1 cut(s)	252
MvaI	CCWGG	3 cut(s)	300, 445, 1235
NciI	CCSGG	2 cut(s)	93, 1207
NdeII	GATC	9 cut(s)	37, 77, 157, 769, 865, 989, 1051, 1189, 1429
NlaIII	CATG	5 cut(s)	457, 575, 776, 1040, 1439
NlaIV	GGNNCC	2 cut(s)	22, 79
NmuCI	GTSAC	2 cut(s)	304, 398
PagI	TCATGA	1 cut(s)	772
PciSI	GCTCTTC	1 cut(s)	54
PdmI	GAANNNNTTC	1 cut(s)	294
PfoI	TCCNGGA	1 cut(s)	298
PleI	GAGTC	4 cut(s)	311, 616, 1190, 1366
PmaCI	CACGTG	1 cut(s)	960
PmlI	CACGTG	1 cut(s)	960
PpsI	GAGTC	4 cut(s)	311, 616, 1190, 1366
Ppu21I	YACGTR	1 cut(s)	960
Psp6I	CCWGG	3 cut(s)	298, 443, 1233
PspCI	CACGTG	1 cut(s)	960
PspGI	CCWGG	3 cut(s)	298, 443, 1233
PspN4I	GGNNCC	2 cut(s)	22, 79
PspPI	GGNCC	1 cut(s)	21
PstI	CTGCAG	1 cut(s)	1108
PstNI	CAGNNNCTG	3 cut(s)	800, 815, 1075
PsuI	RGATCY	1 cut(s)	77
PvuII	CAGCTG	3 cut(s)	800, 812, 1103
RsaI	GTAC	3 cut(s)	996, 1002, 1400
RsaNI	GTAC	3 cut(s)	995, 1001, 1399
SapI	GCTCTTC	1 cut(s)	54
Sau3AI	GATC	9 cut(s)	37, 77, 157, 769, 865, 989, 1051, 1189, 1429
Sau96I	GGNCC	1 cut(s)	21
ScaI	AGTACT	1 cut(s)	1400
SchI	GAGTC	4 cut(s)	312, 616, 1190, 1367
ScrFI	CCNGG	5 cut(s)	93, 300, 445, 1207, 1235
SduI	GDGCHC	1 cut(s)	981
SfaNI	GCATC	9 cut(s)	37, 73, 537, 959, 1087, 1203, 1282, 1307, 1356
SfcI	CTRYAG	2 cut(s)	832, 1104
SinI	GGWCC	1 cut(s)	21
SmlI	CTYRAG	3 cut(s)	319, 826, 1377
SmoI	CTYRAG	3 cut(s)	319, 826, 1377
SpeI	ACTAGT	1 cut(s)	1042
SsiI	CCGC	3 cut(s)	75, 803, 1123
SspI	AATATT	1 cut(s)	747
SspMI	CTAG	4 cut(s)	491, 1043, 1290, 1335
StyD4I	CCNGG	5 cut(s)	91, 298, 443, 1205, 1233
StyI	CCWWGG	1 cut(s)	629
TaaI	ACNGT	1 cut(s)	836
TaiI	ACGT	2 cut(s)	962, 1178
TaqI	TCGA	2 cut(s)	111, 1364
TatI	WGTACW	2 cut(s)	1000, 1398
TauI	GCSGC	1 cut(s)	1125
TscAI	CASTG	3 cut(s)	92, 688, 841
TseFI	GTSAC	2 cut(s)	304, 398
Tsp45I	GTSAC	2 cut(s)	304, 398
TspDTI	ATGAA	6 cut(s)	17, 232, 252, 839, 1053, 1409
TspRI	CASTG	3 cut(s)	92, 688, 841
VpaK11BI	GGWCC	1 cut(s)	21
XapI	RAATTY	5 cut(s)	152, 239, 270, 486, 1228
XcmI	CCANNNNNNNNNTGG	2 cut(s)	451, 560
XmiI	GTMKAC	1 cut(s)	136
XmnI	GAANNNNTTC	1 cut(s)	294
XspI	CTAG	4 cut(s)	491, 1043, 1290, 1335
ZrmI	AGTACT	1 cut(s)	1400

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.