Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0007454

Physical Location & Seq

Genomic Coordinates Reverse (-)

1915961 .. 1918470

Gene Structure 2510 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0024400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGAAAAGAATGCGTCAGATTAGTGGCCCCGACCCAGTTGGGGGTTCTTCTCCTAGAAAGTGCAACCGCATTGACAATGATCGCATCAGTTCATTGCCGGATGATATCCTTCATCACATTATCTCGTTTTTGAGTTTGAGGGAAGCTGTAAGCACGAGTGTTTTGTCTCACCGGTGGAAGAATATGTATGCGTACATGTCAAATCTCGAATTTGATTGGTGTAAGATGCTCGCAGCCAAAAGGGCAGCTAGACGGGTCTCCAATCCAAATAGGGGAGTCTATTGCAGGAAGAACGTGCGTTTTTTGGTGATAAGAATAGATAGATTCCTAACCCGCCATTTGGGCTCGAGGATTGCCTCGTTCAAGGTTTGTTGCTGCCTTAAAGATAAGTATGCTCTTAATATCAATGACTGGATTGATTGTGCTGTCAGAAAGGGTGTCGAAAATCTTGACCTAGCCTTTACATGTGATGACATATCTGAACGAATGGATTGGCCAAGCATGGGCTATTATGAGTTTCCTACTCGTCTCCTTGTAGAGGGTAAAGCATCCAGATTAAGGCATATTTCCTTGCGTTCATGCATGCTCGGGTTAGATTTTCAGGATCGATTCAGCACACTCTCCACTCTTGTGTTGTGTGATGTACATTTTGTTGGACAAGCTAATCCGCTCATGTTTTGTTCTTGTTTGAAGCTTCAGTCTTTGACATTGCAATCGTGTTTTGGATTAGAAAGGTTCAGCATTTCACTCGATTATTTGAAGTCACTGGTAGTGAGAAAGTGCATAGGTTTAAGAGGTATTGAGCTTAGTGCCCCCAATCTTACAACCTTTTATTGTGAAGGCAATGTGATCAAGATCTCATGCATAAAAGTTCCGAATCTGGTGGAAGTTTATGTTTCGCTAGGCGGAATTAATGTTATACATACTTTTGCTCAGCTTGAGAAAGATCTTCCTAACGTCAAGTCTCTGACAGTGAACAAAAGAAATATACCTATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000077 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0006950 GO:0006974 GO:0008150 GO:0009314 GO:0009628 GO:0009889 GO:0009987 GO:0010212 GO:0010332 GO:0010468 GO:0010556 GO:0010564 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031570 GO:0033043 GO:0033554 GO:0040020 GO:0043565 GO:0045786 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051252 GO:0051445 GO:0051716 GO:0051726 GO:0051783 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

332

Amino Acids

37.86

Weight (kDa)

9.34

Isoelectric Point (pI)

51.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	29 - 61	8e-08	F-box domain
LRR_At1g61320_AtMIF1	PF23622	110 - 327	1.4e-27	At1g61320/AtMIF1, LRR domain
LRR_At5g56370	PF24758	136 - 294	1.3e-08	FBD-associated F-box protein At5g56370, LRR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007454)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29230 AT4G29230 AT4G29230
fragaria_vesca	FvH4_1g06530 FvH4_1g06530
malus_domestica	MD02G1068700.v1.1 MD15G1200200.v1.1
prunus_persica	Prupe.7G217000_v2.0.a1 Prupe.7G217000_v2.0.a1 Prupe.7G217000_v2.0.a1
pyrus_communis	pycom02g05440 pycom15g17790
rosa_chinensis	RchiOBHm_Chr2g0092281
rosa_laevigata	RLG00000016293
rosa_multiflora	Rmu_sc0003289.1_g000022
rosa_roxburghii	Rroxscaffold_2G00149300
rosa_rugosa	Rorug02G0024400 Rorug02G0024500 Rorug02G0024600 Rorug02G0024600
rosa_samantha	Rh2AG070300 Rh2BG069800 Rh2CG071000 Rh2DG068800
rosa_wichuraiana	Rw2G006200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	670
AciI	CCGC	4 cut(s)	67, 334, 668, 906
AclWI	GGATC	1 cut(s)	612
AcoI	YGGCCR	1 cut(s)	494
AcsI	RAATTY	1 cut(s)	209
AcuI	CTGAAG	1 cut(s)	680
AfaI	GTAC	2 cut(s)	194, 645
AfiI	CCNNNNNNNGG	7 cut(s)	40, 41, 272, 340, 503, 538, 558
AflIII	ACRYGT	2 cut(s)	195, 464
AgeI	ACCGGT	1 cut(s)	171
AgsI	TTSAA	3 cut(s)	364, 691, 760
AleI	CACNNNNGTG	1 cut(s)	629
AluBI	AGCT	6 cut(s)	146, 248, 662, 694, 805, 937
AluI	AGCT	6 cut(s)	146, 248, 662, 694, 805, 937
Alw26I	GTCTC	4 cut(s)	171, 262, 533, 969
AlwI	GGATC	1 cut(s)	612
Ama87I	CYCGRG	2 cut(s)	346, 587
AoxI	GGCC	2 cut(s)	25, 494
ApeKI	GCWGC	3 cut(s)	233, 245, 375
ApoI	RAATTY	1 cut(s)	209
AseI	ATTAAT	1 cut(s)	912
AsiGI	ACCGGT	1 cut(s)	171
AspS9I	GGNCC	1 cut(s)	26
AsuHPI	GGTGA	2 cut(s)	161, 319
AvaI	CYCGRG	2 cut(s)	346, 587
BaeGI	GKGCMC	1 cut(s)	814
BalI	TGGCCA	1 cut(s)	496
BanII	GRGCYC	1 cut(s)	347
BauI	CACGAG	1 cut(s)	154
BbvI	GCAGC	3 cut(s)	245, 257, 362
BcgI	CGANNNNNNTGC	2 cut(s)	730, 764
BclI	TGATCA	1 cut(s)	849
BcoDI	GTCTC	4 cut(s)	171, 262, 533, 969
BfaI	CTAG	4 cut(s)	54, 249, 455, 902
BglI	GCCNNNNNGGC	2 cut(s)	242, 342
BglII	AGATCT	2 cut(s)	855, 946
BisI	GCNGC	3 cut(s)	234, 246, 376
BlpI	GCTNAGC	1 cut(s)	933
BlsI	GCNGC	3 cut(s)	235, 247, 377
BmeT110I	CYCGRG	2 cut(s)	346, 587
BmgT120I	GGNCC	1 cut(s)	26
BmiI	GGNNCC	1 cut(s)	28
BmrI	ACTGGG	1 cut(s)	29
BmsI	GCATC	3 cut(s)	93, 216, 557
BmuI	ACTGGG	1 cut(s)	29
Bpu1102I	GCTNAGC	1 cut(s)	933
BpuEI	CTTGAG	1 cut(s)	959
Bsa29I	ATCGAT	1 cut(s)	607
BsaBI	GATNNNNATC	1 cut(s)	854
BsaI	GGTCTC	1 cut(s)	262
BsaWI	WCCGGW	1 cut(s)	171
Bsc4I	CCNNNNNNNGG	7 cut(s)	40, 41, 272, 340, 503, 538, 558
Bse118I	RCCGGY	1 cut(s)	171
Bse1I	ACTGG	3 cut(s)	35, 416, 771
Bse3DI	GCAATG	3 cut(s)	92, 707, 850
Bse8I	GATNNNNATC	1 cut(s)	854
BseCI	ATCGAT	1 cut(s)	607
BseGI	GGATG	2 cut(s)	106, 548
BseJI	GATNNNNATC	1 cut(s)	854
BseLI	CCNNNNNNNGG	7 cut(s)	40, 41, 272, 340, 503, 538, 558
BseMI	GCAATG	3 cut(s)	92, 707, 850
BseMII	CTCAG	1 cut(s)	947
BseNI	ACTGG	3 cut(s)	35, 416, 771
BseSI	GKGCMC	1 cut(s)	814
BseXI	GCAGC	3 cut(s)	245, 257, 362
BshFI	GGCC	2 cut(s)	27, 496
BshTI	ACCGGT	1 cut(s)	171
BshVI	ATCGAT	1 cut(s)	607
BsiHKCI	CYCGRG	2 cut(s)	346, 587
BsiSI	CCGG	2 cut(s)	98, 172
BslI	CCNNNNNNNGG	7 cut(s)	40, 41, 272, 340, 503, 538, 558
BsmAI	GTCTC	4 cut(s)	171, 262, 533, 969
BsmBI	CGTCTC	1 cut(s)	533
BsmI	GAATGC	1 cut(s)	15
BsnI	GGCC	2 cut(s)	27, 496
Bso31I	GGTCTC	1 cut(s)	262
BsoBI	CYCGRG	2 cut(s)	346, 587
Bsp1286I	GDGCHC	2 cut(s)	347, 814
Bsp1407I	TGTACA	1 cut(s)	643
Bsp143I	GATC	5 cut(s)	79, 604, 849, 855, 946
Bsp1720I	GCTNAGC	1 cut(s)	933
BspACI	CCGC	4 cut(s)	67, 334, 668, 906
BspANI	GGCC	2 cut(s)	27, 496
BspCNI	CTCAG	1 cut(s)	946
BspDI	ATCGAT	1 cut(s)	607
BspLI	GGNNCC	1 cut(s)	28
BspPI	GGATC	1 cut(s)	612
BspTNI	GGTCTC	1 cut(s)	262
BsrBI	CCGCTC	1 cut(s)	670
BsrDI	GCAATG	3 cut(s)	92, 707, 850
BsrFI	RCCGGY	1 cut(s)	171
BsrGI	TGTACA	1 cut(s)	643
BsrI	ACTGG	3 cut(s)	35, 416, 771
BssAI	RCCGGY	1 cut(s)	171
BssMI	GATC	5 cut(s)	79, 604, 849, 855, 946
BssSI	CACGAG	1 cut(s)	154
Bst2BI	CACGAG	1 cut(s)	154
Bst4CI	ACNGT	1 cut(s)	973
BstAUI	TGTACA	1 cut(s)	643
BstC8I	GCNNGC	2 cut(s)	231, 584
BstDEI	CTNAG	2 cut(s)	806, 933
BstENI	CCTNNNNNAGG	1 cut(s)	536
BstF5I	GGATG	2 cut(s)	106, 548
BstKTI	GATC	5 cut(s)	82, 607, 852, 858, 949
BstMAI	GTCTC	4 cut(s)	171, 262, 533, 969
BstMBI	GATC	5 cut(s)	79, 604, 849, 855, 946
BstMWI	GCNNNNNNNGC	2 cut(s)	242, 342
BstNSI	RCATGY	3 cut(s)	199, 468, 586
BstSLI	GKGCMC	1 cut(s)	814
BstV1I	GCAGC	3 cut(s)	245, 257, 362
BstX2I	RGATCY	2 cut(s)	855, 946
BstYI	RGATCY	2 cut(s)	855, 946
Bsu15I	ATCGAT	1 cut(s)	607
BsuRI	GGCC	2 cut(s)	27, 496
BsuTUI	ATCGAT	1 cut(s)	607
BtsCI	GGATG	2 cut(s)	106, 548
BtsIMutI	CAGTG	2 cut(s)	764, 978
Cac8I	GCNNGC	2 cut(s)	231, 584
Cfr10I	RCCGGY	1 cut(s)	171
Cfr13I	GGNCC	1 cut(s)	26
ClaI	ATCGAT	1 cut(s)	607
CseI	GACGC	1 cut(s)	2
Csp6I	GTAC	2 cut(s)	193, 644
CspAI	ACCGGT	1 cut(s)	171
CviAII	CATG	7 cut(s)	196, 465, 502, 579, 583, 673, 861
CviQI	GTAC	2 cut(s)	193, 644
DdeI	CTNAG	2 cut(s)	806, 933
DpnI	GATC	5 cut(s)	81, 606, 851, 857, 948
DpnII	GATC	5 cut(s)	79, 604, 849, 855, 946
EaeI	YGGCCR	1 cut(s)	494
EciI	GGCGGA	1 cut(s)	921
Eco24I	GRGCYC	1 cut(s)	347
Eco31I	GGTCTC	1 cut(s)	262
Eco32I	GATATC	1 cut(s)	106
Eco57I	CTGAAG	1 cut(s)	680
Eco88I	CYCGRG	2 cut(s)	346, 587
EcoNI	CCTNNNNNAGG	1 cut(s)	536
EcoRV	GATATC	1 cut(s)	106
EcoT22I	ATGCAT	2 cut(s)	584, 866
EcoT38I	GRGCYC	1 cut(s)	347
Esp3I	CGTCTC	1 cut(s)	533
FaeI	CATG	7 cut(s)	199, 468, 505, 582, 586, 676, 864
FatI	CATG	7 cut(s)	195, 464, 501, 578, 582, 672, 860
FauI	CCCGC	1 cut(s)	341
FbaI	TGATCA	1 cut(s)	849
Fnu4HI	GCNGC	3 cut(s)	234, 246, 376
FokI	GGATG	2 cut(s)	113, 535
FriOI	GRGCYC	1 cut(s)	347
Fsp4HI	GCNGC	3 cut(s)	234, 246, 376
FspBI	CTAG	4 cut(s)	54, 249, 455, 902
GluI	GCNGC	3 cut(s)	234, 246, 376
HaeIII	GGCC	2 cut(s)	27, 496
HapII	CCGG	2 cut(s)	98, 172
HgaI	GACGC	1 cut(s)	2
Hin1II	CATG	7 cut(s)	199, 468, 505, 582, 586, 676, 864
HindIII	AAGCTT	1 cut(s)	692
HinfI	GANTC	4 cut(s)	276, 324, 609, 877
HpaII	CCGG	2 cut(s)	98, 172
HphI	GGTGA	2 cut(s)	161, 319
Hpy166II	GTNNAC	1 cut(s)	976
Hpy188I	TCNGA	6 cut(s)	18, 431, 481, 876, 969, 998
Hpy188III	TCNNGA	5 cut(s)	206, 449, 552, 602, 853
Hpy8I	GTNNAC	1 cut(s)	976
HpyAV	CCTTC	2 cut(s)	119, 833
HpyCH4III	ACNGT	1 cut(s)	973
HpyCH4IV	ACGT	2 cut(s)	294, 957
HpyCH4V	TGCA	6 cut(s)	63, 285, 582, 712, 783, 864
HpyF10VI	GCNNNNNNNGC	2 cut(s)	242, 342
HpyF3I	CTNAG	2 cut(s)	806, 933
HpySE526I	ACGT	2 cut(s)	294, 957
Hsp92II	CATG	7 cut(s)	199, 468, 505, 582, 586, 676, 864
Ksp22I	TGATCA	1 cut(s)	849
Kzo9I	GATC	5 cut(s)	79, 604, 849, 855, 946
LpnPI	CCDG	9 cut(s)	48, 111, 185, 271, 397, 565, 587, 752, 866
Lsp1109I	GCAGC	3 cut(s)	245, 257, 362
LweI	GCATC	3 cut(s)	93, 216, 557
MaeI	CTAG	4 cut(s)	54, 249, 455, 902
MaeII	ACGT	2 cut(s)	294, 957
MaeIII	GTNAC	1 cut(s)	762
MalI	GATC	5 cut(s)	81, 606, 851, 857, 948
MbiI	CCGCTC	1 cut(s)	670
MboI	GATC	5 cut(s)	79, 604, 849, 855, 946
MboII	GAAGA	4 cut(s)	39, 190, 301, 941
MflI	RGATCY	2 cut(s)	855, 946
MhlI	GDGCHC	2 cut(s)	347, 814
MlsI	TGGCCA	1 cut(s)	496
MluCI	AATT	2 cut(s)	209, 909
MluNI	TGGCCA	1 cut(s)	496
MlyI	GAGTC	1 cut(s)	285
MmeI	TCCRAC	1 cut(s)	634
MnlI	CCTC	5 cut(s)	132, 342, 367, 532, 788
Mox20I	TGGCCA	1 cut(s)	496
Mph1103I	ATGCAT	2 cut(s)	584, 866
MscI	TGGCCA	1 cut(s)	496
MseI	TTAA	5 cut(s)	381, 399, 557, 791, 912
MslI	CAYNNNNRTG	1 cut(s)	629
Msp20I	TGGCCA	1 cut(s)	496
MspI	CCGG	2 cut(s)	98, 172
Mva1269I	GAATGC	1 cut(s)	15
MwoI	GCNNNNNNNGC	2 cut(s)	242, 342
NdeII	GATC	5 cut(s)	79, 604, 849, 855, 946
NlaIII	CATG	7 cut(s)	199, 468, 505, 582, 586, 676, 864
NlaIV	GGNNCC	1 cut(s)	28
NmuCI	GTSAC	1 cut(s)	762
NsiI	ATGCAT	2 cut(s)	584, 866
NspI	RCATGY	3 cut(s)	199, 468, 586
OliI	CACNNNNGTG	1 cut(s)	629
PaeI	GCATGC	1 cut(s)	586
PaeR7I	CTCGAG	1 cut(s)	346
PciI	ACATGT	2 cut(s)	195, 464
PctI	GAATGC	1 cut(s)	15
PfeI	GAWTC	3 cut(s)	324, 609, 877
PinAI	ACCGGT	1 cut(s)	171
PkrI	GCNGC	3 cut(s)	235, 247, 377
PleI	GAGTC	1 cut(s)	284
PpsI	GAGTC	1 cut(s)	284
PscI	ACATGT	2 cut(s)	195, 464
PshBI	ATTAAT	1 cut(s)	912
PspN4I	GGNNCC	1 cut(s)	28
PspPI	GGNCC	1 cut(s)	26
PspXI	VCTCGAGB	1 cut(s)	346
PsuI	RGATCY	2 cut(s)	855, 946
RsaI	GTAC	2 cut(s)	194, 645
RsaNI	GTAC	2 cut(s)	193, 644
RseI	CAYNNNNRTG	1 cut(s)	629
SaqAI	TTAA	5 cut(s)	381, 399, 557, 791, 912
SatI	GCNGC	3 cut(s)	234, 246, 376
Sau3AI	GATC	5 cut(s)	79, 604, 849, 855, 946
Sau96I	GGNCC	1 cut(s)	26
SchI	GAGTC	1 cut(s)	285
SduI	GDGCHC	2 cut(s)	347, 814
SfaNI	GCATC	3 cut(s)	93, 216, 557
Sfr274I	CTCGAG	1 cut(s)	346
SgrAI	CRCCGGYG	1 cut(s)	171
SlaI	CTCGAG	1 cut(s)	346
SmiMI	CAYNNNNRTG	1 cut(s)	629
SmlI	CTYRAG	2 cut(s)	346, 938
SmoI	CTYRAG	2 cut(s)	346, 938
SphI	GCATGC	1 cut(s)	586
Sse9I	AATT	2 cut(s)	209, 909
SsiI	CCGC	4 cut(s)	67, 334, 668, 906
SspMI	CTAG	4 cut(s)	54, 249, 455, 902
TaaI	ACNGT	1 cut(s)	973
TaiI	ACGT	2 cut(s)	297, 960
TaqI	TCGA	5 cut(s)	207, 347, 441, 607, 750
TasI	AATT	2 cut(s)	209, 909
TatI	WGTACW	1 cut(s)	643
TfiI	GAWTC	3 cut(s)	324, 609, 877
Tru1I	TTAA	5 cut(s)	381, 399, 557, 791, 912
Tru9I	TTAA	5 cut(s)	381, 399, 557, 791, 912
TscAI	CASTG	2 cut(s)	771, 978
TseFI	GTSAC	1 cut(s)	762
TseI	GCWGC	3 cut(s)	233, 245, 375
Tsp45I	GTSAC	1 cut(s)	762
TspDTI	ATGAA	4 cut(s)	17, 81, 101, 567
TspRI	CASTG	2 cut(s)	771, 978
VspI	ATTAAT	1 cut(s)	912
XagI	CCTNNNNNAGG	1 cut(s)	536
XapI	RAATTY	1 cut(s)	209
XceI	RCATGY	3 cut(s)	199, 468, 586
XhoI	CTCGAG	1 cut(s)	346
XspI	CTAG	4 cut(s)	54, 249, 455, 902
Zsp2I	ATGCAT	2 cut(s)	584, 866

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.