Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0007454

Physical Location & Seq

Genomic Coordinates Reverse (-)

1939680 .. 1945334

Gene Structure 5655 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0024600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2502 bp

ATGGCCGCCGCCTCCTCATCAGCGCCTCCACCGAACCGCGACGGCTCTTCCTCATCGCCTGAGGACGACGCCGTTTTGTCCGCCACCAGGGCTTTTGCGCAGGACGCCTTGCTGCAATTCCAGTCAGGGAAGTTCGATCAGTGCCTCACCGCCTTGCACGAGTGCCTCAAGAGGAAGGCCGGCGATCCCAAAATATTTCATAATATTGGACTTGCGGAATTCTATAGAGATGGTTGTTCAGATCCTAAGAGGTTGCTTGAAGTACTCAATGACGTCAAGCGAAGTGAAGAGCTTGCTCGAGCATCTGCGGAACAAGCGGAATCTGCAAGCAATAGTGGAGATAAATCATCTTCAGGTTCCAAAGCAAGTAGTACAATGGCACATCCATTTTCTGCTCTCTACATGGATGAATTTGACACTTATGTAGCAACCTTAAACATTGCGATTATCTGGTTCCATCTTCATGAATATGCAAAGGCGTTGTCTGTTGTTGAACCACTGTTTCAAAATAGAGGACCTATAGATGAGAAAACTGCTCTTAATATTTGCCTTCTGTTGCTGGATGTGGGGCTAGCTTGCCATGATGCAAAGAAATCTGCTGATGTTTTAATATATCTGGAGAGAGCTTTTGGTGTTAGTTGTATGAATCAGGGAGACAATGGAAGCACTGTGTTGCAACAACCTCCAAACACAGTTGCTAAGTCTTCATTTCCTCCTAGTTCATCAGTCACAGATGCTACTAATTTGGACTCAGATGGTAATACAAATGCCTTGGATTCTGAGGAGACAGGCGAGTTTGATAATGCTGTTTTCGACATGGATGTAGCACAGCCAACCGGTCTCTTATCTTCCAATGATCTTTCGAGGAACCCAGTTGACATATCTGTCTCTTCTGTTTATCTCAAGCTCAAGACGCAACTTTACAAGGTTCGATTTCTACTTCTCACTCGGAACTTAAAGCAAGCTAAGCGAGAAGTGAAGCATGCTGTGAACATCGCACGTGGCAGAGACTTATCTATGGCTCTTCTCTTGAAGTCCCAGCTTGAATATGCTCGTGGTAATTATCGTAAAGCAATCAAGCTGTTGATGGCATCTAGCAACCGAACAGATACAAGGATCTCGAGCATGATCAACAATAATCTAGGATGCATCTATTATCAGCTTGGGAAATATCACACATCATCCGTATTCTTCTCCAATGCATTGCTTAATTGTTCATCTCTTCGGAAGGACAGGCCTCTGAATCTGTCAACTTTTTCCCTGGATAATTCCCTCCTGATAGTATACAACTGTGGTATGCAGTACTTGGCTTGTGGAAAACCATTACTTGCTGCTCGCTGTTTCCAAAAGGCTGGTTTAATTTTCTACAATCGACCTCTGTTGTGGCTTCGGCTTGCTGAATGCTGTCTGATGGCTTTAGAGAAGGGACTAGTCAAAAACAGTCCAGCTGCATCAGAAGTCAGAGTTTATGTTATTGGCAAGGGTAAGTGGAGGCAACTTGTCATGCAGGATGGGGTTGTTAAGAATGGGAACTCTGAAAAAGGTGATTTATTTTTGGGTAGTGATCAGCAGCCCAAGCTCTCAATGTCCCTTGCCCGGCAGTGTCTCTCTAATGCCTTGTACTTACTAAACCATTCCGAATCAAGCTATTGTAAGAATTCTTTGCCATCTAATTTCTTCTTGGACGATAATGAGTTAGGTGAAGTGGCATCGTCCAAGAATTCCAACCACAAGAACTTGCACAACATTGATTCCGAGGCTTCTGTGCTGTCTGTAGGCTTGGGTCAGGTTAGTGCAAATGGGGATGCAAAAGAGCAGAAGGGAGGAACTACTCAGGAGCTTGTGCAAAACTCCCTTTCCTCCTATGAAGAGATTCGTAAAAAGGAAAATCTGTTGCTCAAGCAAGCTCTTCTTGCTAATCAGGCATATGTGGAGTTGGAATTGGAAAATCCTCTGAAAGCCTTGTCAATTTCGAAGTCTCTCTTGGAAATTCCGGAATGTTCTAGAATTTACATATTTCTAGGTCATGTGTATGCGGCAGAGGCTCTTTGCTTGCTAAACAGGCCAAAGGATGCTGCTGAGCATTTGTTGACATATTTGTCTGGAGCTAATAATGTTGAATTGCCATTCACAGAAGAGGACTTTGAGCAATTGAAGGGGGTCAGGACTGTTGATTATGAAGAGGTGAATGGAGGGTCAGCGACTGCAAAACCTTCGGCCTCAGAAGACGGGTTAAGCTTTGTGTTCATCAAGCCAGAAGAGGCACTTGGAGCGATGTACGTAAATTTTGCTGCCTTGTACGCCATGCAGGGTGAACTTGATCGGGCTCACCAGTTTGTTGCACAGGCATTGTCCATAGTACCCAACAATCTACAAGCTTCTTTGACTGCAGTTTATGTGGACCTCAAGCTTGGTAAGTCTCAAGAAGCCCTTGCCAAGTTGAAACGGTGTAGTCGAATTACATTCCTTCCTAGCGGATTAACATTGAATAAAGCTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000077 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0006950 GO:0006974 GO:0008150 GO:0009314 GO:0009628 GO:0009889 GO:0009987 GO:0010212 GO:0010332 GO:0010468 GO:0010556 GO:0010564 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031570 GO:0033043 GO:0033554 GO:0040020 GO:0043565 GO:0045786 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051252 GO:0051445 GO:0051716 GO:0051726 GO:0051783 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

833

Amino Acids

91.16

Weight (kDa)

6.22

Isoelectric Point (pI)

41.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007454)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29230 AT4G29230 AT4G29230
fragaria_vesca	FvH4_1g06530 FvH4_1g06530
malus_domestica	MD02G1068700.v1.1 MD15G1200200.v1.1
prunus_persica	Prupe.7G217000_v2.0.a1 Prupe.7G217000_v2.0.a1 Prupe.7G217000_v2.0.a1
pyrus_communis	pycom02g05440 pycom15g17790
rosa_chinensis	RchiOBHm_Chr2g0092281
rosa_laevigata	RLG00000016293
rosa_multiflora	Rmu_sc0003289.1_g000022
rosa_roxburghii	Rroxscaffold_2G00149300
rosa_rugosa	Rorug02G0024400 Rorug02G0024500 Rorug02G0024600 Rorug02G0024600
rosa_samantha	Rh2AG070300 Rh2BG069800 Rh2CG071000 Rh2DG068800
rosa_wichuraiana	Rw2G006200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	884, 2098
AatII	GACGTC	1 cut(s)	276
Acc16I	TGCGCA	1 cut(s)	99
AccI	GTMKAC	1 cut(s)	1284
AccII	CGCG	1 cut(s)	39
AccIII	TCCGGA	1 cut(s)	1993
AclWI	GGATC	3 cut(s)	179, 236, 1124
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	7 cut(s)	218, 410, 1657, 1720, 1989, 2007, 2284
AcuI	CTGAAG	1 cut(s)	336
AcvI	CACGTG	1 cut(s)	1001
AcyI	GRCGYC	3 cut(s)	69, 105, 273
AfaI	GTAC	7 cut(s)	264, 373, 1304, 1622, 2279, 2300, 2361
AfiI	CCNNNNNNNGG	2 cut(s)	87, 1596
AgeI	ACCGGT	1 cut(s)	836
AgsI	TTSAA	9 cut(s)	260, 494, 506, 1033, 1046, 2120, 2155, 2443, 2488
AhlI	ACTAGT	1 cut(s)	1429
AjnI	CCWGG	2 cut(s)	86, 1260
AjuI	GAANNNNNNNTTGG	4 cut(s)	1967, 1999, 2250, 2282
Alw26I	GTCTC	8 cut(s)	648, 779, 845, 892, 1002, 1610, 1983, 2424
AlwI	GGATC	3 cut(s)	179, 236, 1124
AlwNI	CAGNNNCTG	1 cut(s)	2204
Ama87I	CYCGRG	2 cut(s)	297, 1120
Aor13HI	TCCGGA	1 cut(s)	1993
AoxI	GGCC	5 cut(s)	3, 177, 1235, 2063, 2217
ApeKI	GCWGC	6 cut(s)	112, 1331, 1448, 1570, 2075, 2291
ApoI	RAATTY	7 cut(s)	218, 410, 1657, 1720, 1989, 2007, 2284
ArsI	GACNNNNNNTTYG	2 cut(s)	467, 499
AsiGI	ACCGGT	1 cut(s)	836
Asp700I	GAANNNNTTC	1 cut(s)	1872
AspLEI	GCGC	2 cut(s)	25, 100
AspS9I	GGNCC	2 cut(s)	515, 2401
AsuC2I	CCSGG	1 cut(s)	1597
AsuHPI	GGTGA	6 cut(s)	139, 1556, 1712, 2197, 2321, 2324
AsuII	TTCGAA	1 cut(s)	1973
AsuNHI	GCTAGC	1 cut(s)	571
AvaI	CYCGRG	2 cut(s)	297, 1120
AvaII	GGWCC	2 cut(s)	515, 2401
AxyI	CCTNAGG	1 cut(s)	60
BanII	GRGCYC	1 cut(s)	2329
BauI	CACGAG	2 cut(s)	158, 1053
BbrPI	CACGTG	1 cut(s)	1001
BbsI	GAAGAC	2 cut(s)	696, 2232
BbvI	GCAGC	6 cut(s)	99, 1318, 1435, 1582, 2062, 2278
BccI	CCATC	7 cut(s)	224, 465, 749, 1081, 1405, 1505, 1675
BceAI	ACGGC	2 cut(s)	56, 58
BcgI	CGANNNNNNTGC	2 cut(s)	2196, 2230
BciT130I	CCWGG	2 cut(s)	88, 1262
BclI	TGATCA	2 cut(s)	1128, 1564
BcnI	CCSGG	1 cut(s)	1597
BcoDI	GTCTC	8 cut(s)	648, 779, 845, 892, 1002, 1610, 1983, 2424
BcuI	ACTAGT	1 cut(s)	1429
BfaI	CTAG	8 cut(s)	572, 717, 1095, 1142, 1430, 2004, 2021, 2472
BfmI	CTRYAG	4 cut(s)	223, 519, 1773, 2388
BfoI	RGCGCY	1 cut(s)	26
BglI	GCCNNNNNGGC	1 cut(s)	89
BisI	GCNGC	9 cut(s)	6, 9, 113, 1332, 1449, 1571, 2037, 2076, 2292
BlpI	GCTNAGC	2 cut(s)	966, 2079
BlsI	GCNGC	9 cut(s)	7, 10, 114, 1333, 1450, 1572, 2038, 2077, 2293
BmcAI	AGTACT	2 cut(s)	264, 1304
Bme1390I	CCNGG	3 cut(s)	88, 1262, 1597
Bme18I	GGWCC	2 cut(s)	515, 2401
BmeT110I	CYCGRG	2 cut(s)	297, 1120
BmgT120I	GGNCC	2 cut(s)	515, 2401
BmiI	GGNNCC	3 cut(s)	358, 455, 869
BmrFI	CCNGG	3 cut(s)	88, 1262, 1597
BmrI	ACTGGG	1 cut(s)	866
BmtI	GCTAGC	1 cut(s)	575
BmuI	ACTGGG	1 cut(s)	866
BpiI	GAAGAC	2 cut(s)	696, 2232
BpmI	CTGGAG	2 cut(s)	638, 2124
Bpu1102I	GCTNAGC	2 cut(s)	966, 2079
Bpu14I	TTCGAA	1 cut(s)	1973
BpuEI	CTTGAG	6 cut(s)	152, 887, 893, 1883, 2390, 2406
BpuMI	CCSGG	1 cut(s)	1597
BsaAI	YACGTR	2 cut(s)	1001, 2281
BsaHI	GRCGYC	3 cut(s)	69, 105, 273
BsaI	GGTCTC	1 cut(s)	845
BsaJI	CCNNGG	4 cut(s)	87, 771, 1260, 1755
BsaWI	WCCGGW	2 cut(s)	836, 1993
Bsc4I	CCNNNNNNNGG	2 cut(s)	87, 1596
Bse118I	RCCGGY	2 cut(s)	179, 836
Bse1I	ACTGG	3 cut(s)	121, 872, 2332
Bse21I	CCTNAGG	1 cut(s)	60
Bse3DI	GCAATG	2 cut(s)	438, 1202
BseAI	TCCGGA	1 cut(s)	1993
BseBI	CCWGG	2 cut(s)	88, 1262
BseDI	CCNNGG	4 cut(s)	87, 771, 1260, 1755
BseGI	GGATG	9 cut(s)	382, 412, 568, 826, 1151, 1181, 1516, 1810, 2077
BseLI	CCNNNNNNNGG	2 cut(s)	87, 1596
BseMI	GCAATG	2 cut(s)	438, 1202
BseMII	CTCAG	6 cut(s)	51, 765, 771, 1847, 2070, 2235
BseNI	ACTGG	3 cut(s)	121, 872, 2332
BseRI	GAGGAG	2 cut(s)	4, 797
BseXI	GCAGC	6 cut(s)	99, 1318, 1435, 1582, 2062, 2278
BseYI	CCCAGC	1 cut(s)	1038
Bsh1236I	CGCG	1 cut(s)	39
BshFI	GGCC	5 cut(s)	5, 179, 1237, 2065, 2219
BshTI	ACCGGT	1 cut(s)	836
BsiHKCI	CYCGRG	2 cut(s)	297, 1120
BsiSI	CCGG	4 cut(s)	180, 837, 1597, 1994
BslFI	GGGAC	3 cut(s)	1021, 1440, 1573
BslI	CCNNNNNNNGG	2 cut(s)	87, 1596
BsmAI	GTCTC	8 cut(s)	648, 779, 845, 892, 1002, 1610, 1983, 2424
BsmFI	GGGAC	3 cut(s)	1021, 1440, 1573
BsmI	GAATGC	1 cut(s)	1406
BsnI	GGCC	5 cut(s)	5, 179, 1237, 2065, 2219
Bso31I	GGTCTC	1 cut(s)	845
BsoBI	CYCGRG	2 cut(s)	297, 1120
Bsp119I	TTCGAA	1 cut(s)	1973
Bsp1286I	GDGCHC	1 cut(s)	2329
Bsp13I	TCCGGA	1 cut(s)	1993
Bsp143I	GATC	8 cut(s)	136, 184, 241, 856, 1116, 1128, 1564, 2320
Bsp1720I	GCTNAGC	2 cut(s)	966, 2079
BspANI	GGCC	5 cut(s)	5, 179, 1237, 2065, 2219
BspCNI	CTCAG	6 cut(s)	52, 764, 772, 1846, 2071, 2234
BspEI	TCCGGA	1 cut(s)	1993
BspFNI	CGCG	1 cut(s)	39
BspHI	TCATGA	1 cut(s)	463
BspLI	GGNNCC	3 cut(s)	358, 455, 869
BspMAI	CTGCAG	1 cut(s)	2392
BspOI	GCTAGC	1 cut(s)	575
BspPI	GGATC	3 cut(s)	179, 236, 1124
BspQI	GCTCTTC	4 cut(s)	52, 282, 1029, 1914
BspT104I	TTCGAA	1 cut(s)	1973
BspTNI	GGTCTC	1 cut(s)	845
BsrDI	GCAATG	2 cut(s)	438, 1202
BsrFI	RCCGGY	2 cut(s)	179, 836
BsrI	ACTGG	3 cut(s)	121, 872, 2332
BssAI	RCCGGY	2 cut(s)	179, 836
BssECI	CCNNGG	4 cut(s)	87, 771, 1260, 1755
BssMI	GATC	8 cut(s)	136, 184, 241, 856, 1116, 1128, 1564, 2320
BssNAI	GTATAC	1 cut(s)	1285
BssNI	GRCGYC	3 cut(s)	69, 105, 273
BssSI	CACGAG	2 cut(s)	158, 1053
BssT1I	CCWWGG	1 cut(s)	771
Bst1107I	GTATAC	1 cut(s)	1285
Bst2BI	CACGAG	2 cut(s)	158, 1053
Bst2UI	CCWGG	2 cut(s)	88, 1262
Bst4CI	ACNGT	7 cut(s)	501, 670, 694, 1292, 1442, 2170, 2448
BstACI	GRCGYC	3 cut(s)	69, 105, 273
BstBAI	YACGTR	2 cut(s)	1001, 2281
BstBI	TTCGAA	1 cut(s)	1973
BstDEI	CTNAG	9 cut(s)	60, 246, 699, 751, 780, 966, 1833, 2079, 2221
BstF5I	GGATG	9 cut(s)	382, 412, 568, 826, 1151, 1181, 1516, 1810, 2077
BstFNI	CGCG	1 cut(s)	39
BstH2I	RGCGCY	1 cut(s)	26
BstHHI	GCGC	2 cut(s)	25, 100
BstKTI	GATC	8 cut(s)	139, 187, 244, 859, 1119, 1131, 1567, 2323
BstMAI	GTCTC	8 cut(s)	648, 779, 845, 892, 1002, 1610, 1983, 2424
BstMBI	GATC	8 cut(s)	136, 184, 241, 856, 1116, 1128, 1564, 2320
BstNI	CCWGG	2 cut(s)	88, 1262
BstNSI	RCATGY	1 cut(s)	986
BstSCI	CCNGG	3 cut(s)	86, 1260, 1595
BstSFI	CTRYAG	4 cut(s)	223, 519, 1773, 2388
BstSNI	TACGTA	1 cut(s)	2281
BstUI	CGCG	1 cut(s)	39
BstV1I	GCAGC	6 cut(s)	99, 1318, 1435, 1582, 2062, 2278
BstV2I	GAAGAC	2 cut(s)	696, 2232
BstX2I	RGATCY	2 cut(s)	241, 1116
BstXI	CCANNNNNNTGG	1 cut(s)	1352
BstYI	RGATCY	2 cut(s)	241, 1116
BstZ17I	GTATAC	1 cut(s)	1285
Bsu36I	CCTNAGG	1 cut(s)	60
BsuRI	GGCC	5 cut(s)	5, 179, 1237, 2065, 2219
BtgZI	GCGATG	3 cut(s)	39, 979, 2288
BtsCI	GGATG	9 cut(s)	382, 412, 568, 826, 1151, 1181, 1516, 1810, 2077
BtsI	GCAGTG	1 cut(s)	1607
BtsIMutI	CAGTG	4 cut(s)	146, 497, 666, 1607
CaiI	CAGNNNCTG	1 cut(s)	2204
CciI	TCATGA	1 cut(s)	463
CfoI	GCGC	2 cut(s)	25, 100
Cfr10I	RCCGGY	2 cut(s)	179, 836
Cfr13I	GGNCC	2 cut(s)	515, 2401
CseI	GACGC	3 cut(s)	77, 113, 922
Csp6I	GTAC	7 cut(s)	263, 372, 1303, 1621, 2278, 2299, 2360
CspAI	ACCGGT	1 cut(s)	836
CviAII	CATG	9 cut(s)	403, 464, 581, 817, 983, 1126, 1504, 2027, 2305
CviQI	GTAC	7 cut(s)	263, 372, 1303, 1621, 2278, 2299, 2360
DdeI	CTNAG	9 cut(s)	60, 246, 699, 751, 780, 966, 1833, 2079, 2221
DpnI	GATC	8 cut(s)	138, 186, 243, 858, 1118, 1130, 1566, 2322
DpnII	GATC	8 cut(s)	136, 184, 241, 856, 1116, 1128, 1564, 2320
DrdI	GACNNNNNNGTC	2 cut(s)	884, 2098
DseDI	GACNNNNNNGTC	2 cut(s)	884, 2098
EaeI	YGGCCR	1 cut(s)	3
EciI	GGCGGA	1 cut(s)	70
Eco105I	TACGTA	1 cut(s)	2281
Eco130I	CCWWGG	1 cut(s)	771
Eco147I	AGGCCT	1 cut(s)	1237
Eco24I	GRGCYC	1 cut(s)	2329
Eco31I	GGTCTC	1 cut(s)	845
Eco47I	GGWCC	2 cut(s)	515, 2401
Eco57I	CTGAAG	1 cut(s)	336
Eco72I	CACGTG	1 cut(s)	1001
Eco81I	CCTNAGG	1 cut(s)	60
Eco88I	CYCGRG	2 cut(s)	297, 1120
EcoO109I	RGGNCCY	1 cut(s)	515
EcoRI	GAATTC	3 cut(s)	218, 1657, 1720
EcoRII	CCWGG	2 cut(s)	86, 1260
EcoT14I	CCWWGG	1 cut(s)	771
EcoT22I	ATGCAT	2 cut(s)	1151, 1204
EcoT38I	GRGCYC	1 cut(s)	2329
ErhI	CCWWGG	1 cut(s)	771
FaeI	CATG	9 cut(s)	406, 467, 584, 820, 986, 1129, 1507, 2030, 2308
FalI	AAGNNNNNCTT	8 cut(s)	1896, 1928, 1967, 1999, 2250, 2282, 2415, 2447
FaqI	GGGAC	3 cut(s)	1021, 1440, 1573
FatI	CATG	9 cut(s)	402, 463, 580, 816, 982, 1125, 1503, 2026, 2304
FauNDI	CATATG	1 cut(s)	1927
FbaI	TGATCA	2 cut(s)	1128, 1564
FblI	GTMKAC	1 cut(s)	1284
Fnu4HI	GCNGC	9 cut(s)	6, 9, 113, 1332, 1449, 1571, 2037, 2076, 2292
FokI	GGATG	9 cut(s)	369, 419, 575, 833, 1158, 1168, 1523, 1817, 2084
FriOI	GRGCYC	1 cut(s)	2329
Fsp4HI	GCNGC	9 cut(s)	6, 9, 113, 1332, 1449, 1571, 2037, 2076, 2292
FspBI	CTAG	8 cut(s)	572, 717, 1095, 1142, 1430, 2004, 2021, 2472
FspI	TGCGCA	1 cut(s)	99
GlaI	GCGC	2 cut(s)	24, 99
GluI	GCNGC	9 cut(s)	6, 9, 113, 1332, 1449, 1571, 2037, 2076, 2292
GsaI	CCCAGC	1 cut(s)	1042
GsuI	CTGGAG	2 cut(s)	638, 2124
HaeII	RGCGCY	1 cut(s)	26
HaeIII	GGCC	5 cut(s)	5, 179, 1237, 2065, 2219
HapII	CCGG	4 cut(s)	180, 837, 1597, 1994
HgaI	GACGC	3 cut(s)	77, 113, 922
HhaI	GCGC	2 cut(s)	25, 100
Hin1I	GRCGYC	3 cut(s)	69, 105, 273
Hin1II	CATG	9 cut(s)	406, 467, 584, 820, 986, 1129, 1507, 2030, 2308
Hin6I	GCGC	2 cut(s)	23, 98
HinP1I	GCGC	2 cut(s)	23, 98
HincII	GTYRAC	3 cut(s)	877, 1251, 2091
HindII	GTYRAC	3 cut(s)	877, 1251, 2091
HindIII	AAGCTT	4 cut(s)	2236, 2376, 2408, 2493
HinfI	GANTC	8 cut(s)	320, 646, 749, 776, 1243, 1640, 1751, 1873
HpaII	CCGG	4 cut(s)	180, 837, 1597, 1994
HphI	GGTGA	6 cut(s)	139, 1556, 1712, 2197, 2321, 2324
Hpy166II	GTNNAC	7 cut(s)	877, 991, 1251, 1285, 2091, 2315, 2401
Hpy8I	GTNNAC	7 cut(s)	877, 991, 1251, 1285, 2091, 2315, 2401
Hpy99I	CGWCG	2 cut(s)	44, 71
HpyAV	CCTTC	8 cut(s)	169, 560, 1222, 1417, 1813, 2149, 2223, 2477
HpyCH4III	ACNGT	7 cut(s)	501, 670, 694, 1292, 1442, 2170, 2448
HpyCH4IV	ACGT	3 cut(s)	273, 1000, 2280
HpyF3I	CTNAG	9 cut(s)	60, 246, 699, 751, 780, 966, 1833, 2079, 2221
HpySE526I	ACGT	3 cut(s)	273, 1000, 2280
Hsp92I	GRCGYC	3 cut(s)	69, 105, 273
Hsp92II	CATG	9 cut(s)	406, 467, 584, 820, 986, 1129, 1507, 2030, 2308
HspAI	GCGC	2 cut(s)	23, 98
Kpn2I	TCCGGA	1 cut(s)	1993
KroI	GCCGGC	1 cut(s)	179
KroNI	GCCGGC	1 cut(s)	181
Ksp22I	TGATCA	2 cut(s)	1128, 1564
Kzo9I	GATC	8 cut(s)	136, 184, 241, 856, 1116, 1128, 1564, 2320
LguI	GCTCTTC	4 cut(s)	52, 282, 1029, 1914
LmnI	GCTCC	3 cut(s)	1837, 2105, 2270
Lsp1109I	GCAGC	6 cut(s)	99, 1318, 1435, 1582, 2062, 2278
MaeI	CTAG	8 cut(s)	572, 717, 1095, 1142, 1430, 2004, 2021, 2472
MaeII	ACGT	3 cut(s)	273, 1000, 2280
MaeIII	GTNAC	1 cut(s)	727
MalI	GATC	8 cut(s)	138, 186, 243, 858, 1118, 1130, 1566, 2322
MboI	GATC	8 cut(s)	136, 184, 241, 856, 1116, 1128, 1564, 2320
MfeI	CAATTG	1 cut(s)	2150
MflI	RGATCY	2 cut(s)	241, 1116
MhlI	GDGCHC	1 cut(s)	2329
MlyI	GAGTC	1 cut(s)	743
MmeI	TCCRAC	2 cut(s)	1749, 1917
Mph1103I	ATGCAT	2 cut(s)	1151, 1204
MroI	TCCGGA	1 cut(s)	1993
MroNI	GCCGGC	1 cut(s)	179
MroXI	GAANNNNTTC	1 cut(s)	1872
MseI	TTAA	9 cut(s)	434, 540, 608, 956, 1209, 1358, 1521, 2234, 2480
MslI	CAYNNNNRTG	3 cut(s)	462, 468, 2031
MspA1I	CMGCKG	1 cut(s)	1448
MspI	CCGG	4 cut(s)	180, 837, 1597, 1994
MspR9I	CCNGG	3 cut(s)	88, 1262, 1597
MunI	CAATTG	1 cut(s)	2150
Mva1269I	GAATGC	1 cut(s)	1406
MvaI	CCWGG	2 cut(s)	88, 1262
MvnI	CGCG	1 cut(s)	39
NaeI	GCCGGC	1 cut(s)	181
NciI	CCSGG	1 cut(s)	1597
NdeI	CATATG	1 cut(s)	1927
NdeII	GATC	8 cut(s)	136, 184, 241, 856, 1116, 1128, 1564, 2320
NgoMIV	GCCGGC	1 cut(s)	179
NheI	GCTAGC	1 cut(s)	571
NlaIII	CATG	9 cut(s)	406, 467, 584, 820, 986, 1129, 1507, 2030, 2308
NlaIV	GGNNCC	3 cut(s)	358, 455, 869
NmuCI	GTSAC	1 cut(s)	727
NsbI	TGCGCA	1 cut(s)	99
NsiI	ATGCAT	2 cut(s)	1151, 1204
NspI	RCATGY	1 cut(s)	986
NspV	TTCGAA	1 cut(s)	1973
PaeI	GCATGC	1 cut(s)	986
PaeR7I	CTCGAG	2 cut(s)	297, 1120
PagI	TCATGA	1 cut(s)	463
PceI	AGGCCT	1 cut(s)	1237
PciSI	GCTCTTC	4 cut(s)	52, 282, 1029, 1914
PcsI	WCGNNNNNNNCGW	1 cut(s)	2452
PctI	GAATGC	1 cut(s)	1406
PdiI	GCCGGC	1 cut(s)	181
PdmI	GAANNNNTTC	1 cut(s)	1872
PfeI	GAWTC	7 cut(s)	320, 646, 776, 1243, 1640, 1751, 1873
PinAI	ACCGGT	1 cut(s)	836
PkrI	GCNGC	9 cut(s)	7, 10, 114, 1333, 1450, 1572, 2038, 2077, 2293
PleI	GAGTC	1 cut(s)	743
PmaCI	CACGTG	1 cut(s)	1001
PmlI	CACGTG	1 cut(s)	1001
PpsI	GAGTC	1 cut(s)	743
Ppu21I	YACGTR	2 cut(s)	1001, 2281
PpuMI	RGGWCCY	1 cut(s)	515
Psp5II	RGGWCCY	1 cut(s)	515
Psp6I	CCWGG	2 cut(s)	86, 1260
PspCI	CACGTG	1 cut(s)	1001
PspFI	CCCAGC	1 cut(s)	1038
PspGI	CCWGG	2 cut(s)	86, 1260
PspN4I	GGNNCC	3 cut(s)	358, 455, 869
PspPI	GGNCC	2 cut(s)	515, 2401
PspPPI	RGGWCCY	1 cut(s)	515
PspXI	VCTCGAGB	1 cut(s)	297
PstI	CTGCAG	1 cut(s)	2392
PstNI	CAGNNNCTG	1 cut(s)	2204
PsuI	RGATCY	2 cut(s)	241, 1116
PvuII	CAGCTG	1 cut(s)	1448
RsaI	GTAC	7 cut(s)	264, 373, 1304, 1622, 2279, 2300, 2361
RsaNI	GTAC	7 cut(s)	263, 372, 1303, 1621, 2278, 2299, 2360
RseI	CAYNNNNRTG	3 cut(s)	462, 468, 2031
SapI	GCTCTTC	4 cut(s)	52, 282, 1029, 1914
SaqAI	TTAA	9 cut(s)	434, 540, 608, 956, 1209, 1358, 1521, 2234, 2480
SatI	GCNGC	9 cut(s)	6, 9, 113, 1332, 1449, 1571, 2037, 2076, 2292
Sau3AI	GATC	8 cut(s)	136, 184, 241, 856, 1116, 1128, 1564, 2320
Sau96I	GGNCC	2 cut(s)	515, 2401
ScaI	AGTACT	2 cut(s)	264, 1304
SchI	GAGTC	1 cut(s)	743
ScrFI	CCNGG	3 cut(s)	88, 1262, 1597
SduI	GDGCHC	1 cut(s)	2329
SfcI	CTRYAG	4 cut(s)	223, 519, 1773, 2388
Sfr274I	CTCGAG	2 cut(s)	297, 1120
SfuI	TTCGAA	1 cut(s)	1973
SinI	GGWCC	2 cut(s)	515, 2401
SlaI	CTCGAG	2 cut(s)	297, 1120
SmiMI	CAYNNNNRTG	3 cut(s)	462, 468, 2031
SmlI	CTYRAG	8 cut(s)	167, 297, 902, 908, 1120, 1898, 2405, 2421
SmoI	CTYRAG	8 cut(s)	167, 297, 902, 908, 1120, 1898, 2405, 2421
SnaBI	TACGTA	1 cut(s)	2281
SpeI	ACTAGT	1 cut(s)	1429
SphI	GCATGC	1 cut(s)	986
SseBI	AGGCCT	1 cut(s)	1237
SspI	AATATT	3 cut(s)	195, 205, 544
SspMI	CTAG	8 cut(s)	572, 717, 1095, 1142, 1430, 2004, 2021, 2472
StuI	AGGCCT	1 cut(s)	1237
StyD4I	CCNGG	3 cut(s)	86, 1260, 1595
StyI	CCWWGG	1 cut(s)	771
TaaI	ACNGT	7 cut(s)	501, 670, 694, 1292, 1442, 2170, 2448
TaiI	ACGT	3 cut(s)	276, 1003, 2283
TaqI	TCGA	9 cut(s)	135, 298, 813, 863, 931, 1121, 1372, 1973, 2455
TatI	WGTACW	4 cut(s)	262, 371, 1302, 1620
TauI	GCSGC	3 cut(s)	8, 11, 2039
TfiI	GAWTC	7 cut(s)	320, 646, 776, 1243, 1640, 1751, 1873
Tru1I	TTAA	9 cut(s)	434, 540, 608, 956, 1209, 1358, 1521, 2234, 2480
Tru9I	TTAA	9 cut(s)	434, 540, 608, 956, 1209, 1358, 1521, 2234, 2480
TscAI	CASTG	4 cut(s)	146, 504, 673, 1607
TseFI	GTSAC	1 cut(s)	727
TseI	GCWGC	6 cut(s)	112, 1331, 1448, 1570, 2075, 2291
Tsp45I	GTSAC	1 cut(s)	727
TspGWI	ACGGA	1 cut(s)	1174
TspRI	CASTG	4 cut(s)	146, 504, 673, 1607
VpaK11BI	GGWCC	2 cut(s)	515, 2401
XapI	RAATTY	7 cut(s)	218, 410, 1657, 1720, 1989, 2007, 2284
XbaI	TCTAGA	1 cut(s)	2003
XceI	RCATGY	1 cut(s)	986
XhoI	CTCGAG	2 cut(s)	297, 1120
XmiI	GTMKAC	1 cut(s)	1284
XmnI	GAANNNNTTC	1 cut(s)	1872
XspI	CTAG	8 cut(s)	572, 717, 1095, 1142, 1430, 2004, 2021, 2472
ZraI	GACGTC	1 cut(s)	274
ZrmI	AGTACT	2 cut(s)	264, 1304
Zsp2I	ATGCAT	2 cut(s)	1151, 1204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.