Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0007454

Physical Location & Seq

Genomic Coordinates Forward (+)

1925555 .. 1927589

Gene Structure 2035 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0024500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGGAGTCCAGTAAACTCAATGCTCTCTTCTTCATCTTCATGCTCGTCATTTCCTCGGCCGCTCCGATTCTCGGGTGCCCTACTTGCGGCAAAAAGCCTCCTCCCAAGCACACTAAGCCTAAGACCCCCAAGGGCCCTATTACAGTCCCTCCCATTGTGAAACCCCCAGTCATCAAAGTCCCCCCAGTCACAGTCCCACCTATCAAACCCCCAGTGACAATACCACCCATCGTCAAACCACCAATCACCATCCCCCCGGTCATCCCTCCCATTGTCAAACCACCAATCACAATCCCACCAGTCATCCCTCCCGTCGTAAAACCACCAATCAAAATCCCACCAGTGATTCCACCAATAGTGAAACCACCAATCACATTACCACCAGTGGTAATCCCTCCAGTGATTCCCCCCATTGTCAAACCACCAGTGGAGATTCCCCCAATCACCACCAAGCCCCCGAGCCCAGGGACACCGTGCCCCCCACCACCTGGGAAACCAGCTCCCAAGGACACTTGCCCCATCGACACACTGAAGCTCGGAGCTTGCGTGGATCTCCTCGGTGGGTTGGTTCACGTTGGGCTCGGTGACCCCGTGGTGAACGAGTGCTGCCCGGTGCTCGCAGGACTTGTTGAACTTGAAGCTGCAGTGTGCTTGTGCACCACCCTTAAACTTAAGCTTCTCAACCTCAACATCTTCGTCCCTATTGCTCTTGAGCTCCTTGTCACTTGTGGCAAGAGCCCTCCTCCTGGTTTCACCTGCTCTATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000077 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0006950 GO:0006974 GO:0008150 GO:0009314 GO:0009628 GO:0009889 GO:0009987 GO:0010212 GO:0010332 GO:0010468 GO:0010556 GO:0010564 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031570 GO:0033043 GO:0033554 GO:0040020 GO:0043565 GO:0045786 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051252 GO:0051445 GO:0051716 GO:0051726 GO:0051783 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

255

Amino Acids

26.45

Weight (kDa)

9.36

Isoelectric Point (pI)

48.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrophob_seed	PF14547	171 - 254	3.2e-27	Hydrophobic seed protein
Tryp_alpha_amyl	PF00234	172 - 253	5.9e-12	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007454)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29230 AT4G29230 AT4G29230
fragaria_vesca	FvH4_1g06530 FvH4_1g06530
malus_domestica	MD02G1068700.v1.1 MD15G1200200.v1.1
prunus_persica	Prupe.7G217000_v2.0.a1 Prupe.7G217000_v2.0.a1 Prupe.7G217000_v2.0.a1
pyrus_communis	pycom02g05440 pycom15g17790
rosa_chinensis	RchiOBHm_Chr2g0092281
rosa_laevigata	RLG00000016293
rosa_multiflora	Rmu_sc0003289.1_g000022
rosa_roxburghii	Rroxscaffold_2G00149300
rosa_rugosa	Rorug02G0024400 Rorug02G0024500 Rorug02G0024600 Rorug02G0024600
rosa_samantha	Rh2AG070300 Rh2BG069800 Rh2CG071000 Rh2DG068800
rosa_wichuraiana	Rw2G006200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	764
Acc36I	ACCTGC	1 cut(s)	764
AccB1I	GGYRCC	1 cut(s)	75
AccB7I	CCANNNNNTGG	1 cut(s)	488
AccBSI	CCGCTC	1 cut(s)	62
AciI	CCGC	2 cut(s)	60, 87
AclWI	GGATC	1 cut(s)	558
AcoI	YGGCCR	1 cut(s)	57
AcuI	CTGAAG	1 cut(s)	551
AfiI	CCNNNNNNNGG	5 cut(s)	71, 86, 464, 488, 746
AflII	CTTAAG	1 cut(s)	671
AgsI	TTSAA	2 cut(s)	632, 638
AjnI	CCWGG	3 cut(s)	463, 487, 745
AluBI	AGCT	6 cut(s)	500, 535, 542, 641, 676, 715
AluI	AGCT	6 cut(s)	500, 535, 542, 641, 676, 715
Alw21I	GWGCWC	3 cut(s)	618, 659, 717
Alw44I	GTGCAC	1 cut(s)	655
AlwI	GGATC	1 cut(s)	558
Ama87I	CYCGRG	2 cut(s)	71, 457
AoxI	GGCC	2 cut(s)	57, 133
ApaI	GGGCCC	1 cut(s)	137
ApaLI	GTGCAC	1 cut(s)	655
ApeKI	GCWGC	2 cut(s)	606, 641
AspS9I	GGNCC	2 cut(s)	133, 134
AsuC2I	CCSGG	2 cut(s)	257, 611
AsuHPI	GGTGA	5 cut(s)	238, 436, 596, 607, 745
AvaI	CYCGRG	2 cut(s)	71, 457
BaeGI	GKGCMC	4 cut(s)	80, 137, 479, 659
BanI	GGYRCC	1 cut(s)	75
BanII	GRGCYC	5 cut(s)	137, 464, 582, 717, 740
Bbv12I	GWGCWC	3 cut(s)	618, 659, 717
BbvI	GCAGC	2 cut(s)	593, 628
BccI	CCATC	3 cut(s)	236, 257, 527
BciT130I	CCWGG	3 cut(s)	465, 489, 747
BcnI	CCSGG	2 cut(s)	257, 611
BfaI	CTAG	1 cut(s)	766
BfmI	CTRYAG	1 cut(s)	642
BfrI	CTTAAG	1 cut(s)	671
BfuAI	ACCTGC	1 cut(s)	764
BisI	GCNGC	4 cut(s)	60, 88, 607, 642
BlsI	GCNGC	4 cut(s)	61, 89, 608, 643
Bme1390I	CCNGG	5 cut(s)	257, 465, 489, 611, 747
BmeT110I	CYCGRG	2 cut(s)	71, 457
BmgT120I	GGNCC	2 cut(s)	133, 134
BmiI	GGNNCC	2 cut(s)	77, 135
BmrFI	CCNGG	5 cut(s)	257, 465, 489, 611, 747
BmrI	ACTGGG	3 cut(s)	161, 179, 206
BmuI	ACTGGG	3 cut(s)	161, 179, 206
BplI	GAGNNNNNCTC	2 cut(s)	727, 759
BpmI	CTGGAG	1 cut(s)	381
BpuEI	CTTGAG	1 cut(s)	731
BpuMI	CCSGG	2 cut(s)	257, 611
BsaJI	CCNNGG	9 cut(s)	54, 129, 255, 463, 464, 488, 504, 556, 591
BsaXI	ACNNNNNCTCC	4 cut(s)	133, 163, 531, 561
Bsc4I	CCNNNNNNNGG	5 cut(s)	71, 86, 464, 488, 746
Bse1I	ACTGG	9 cut(s)	9, 167, 185, 212, 299, 341, 383, 398, 425
BseBI	CCWGG	3 cut(s)	465, 489, 747
BseDI	CCNNGG	9 cut(s)	54, 129, 255, 463, 464, 488, 504, 556, 591
BseGI	GGATG	3 cut(s)	249, 261, 303
BseLI	CCNNNNNNNGG	5 cut(s)	71, 86, 464, 488, 746
BseNI	ACTGG	9 cut(s)	9, 167, 185, 212, 299, 341, 383, 398, 425
BseRI	GAGGAG	3 cut(s)	90, 545, 732
BseSI	GKGCMC	4 cut(s)	80, 137, 479, 659
BseX3I	CGGCCG	1 cut(s)	57
BseXI	GCAGC	2 cut(s)	593, 628
Bsh1285I	CGRYCG	1 cut(s)	60
BshFI	GGCC	2 cut(s)	59, 135
BshNI	GGYRCC	1 cut(s)	75
BsiEI	CGRYCG	1 cut(s)	60
BsiHKAI	GWGCWC	3 cut(s)	618, 659, 717
BsiHKCI	CYCGRG	2 cut(s)	71, 457
BsiSI	CCGG	2 cut(s)	257, 611
BslFI	GGGAC	5 cut(s)	131, 164, 179, 481, 683
BslI	CCNNNNNNNGG	5 cut(s)	71, 86, 464, 488, 746
BsmFI	GGGAC	5 cut(s)	131, 164, 179, 481, 683
BsnI	GGCC	2 cut(s)	59, 135
BsoBI	CYCGRG	2 cut(s)	71, 457
Bsp120I	GGGCCC	1 cut(s)	133
Bsp1286I	GDGCHC	9 cut(s)	80, 137, 464, 479, 582, 618, 659, 717, 740
Bsp143I	GATC	1 cut(s)	550
BspACI	CCGC	2 cut(s)	60, 87
BspANI	GGCC	2 cut(s)	59, 135
BspLI	GGNNCC	2 cut(s)	77, 135
BspMAI	CTGCAG	1 cut(s)	646
BspMI	ACCTGC	1 cut(s)	764
BspPI	GGATC	1 cut(s)	558
BspT107I	GGYRCC	1 cut(s)	75
BspTI	CTTAAG	1 cut(s)	671
BsrBI	CCGCTC	1 cut(s)	62
BsrI	ACTGG	9 cut(s)	9, 167, 185, 212, 299, 341, 383, 398, 425
BssECI	CCNNGG	9 cut(s)	54, 129, 255, 463, 464, 488, 504, 556, 591
BssMI	GATC	1 cut(s)	550
BssT1I	CCWWGG	2 cut(s)	129, 504
Bst2UI	CCWGG	3 cut(s)	465, 489, 747
Bst4CI	ACNGT	3 cut(s)	145, 193, 474
Bst6I	CTCTTC	1 cut(s)	32
BstAFI	CTTAAG	1 cut(s)	671
BstC8I	GCNNGC	2 cut(s)	544, 618
BstDEI	CTNAG	2 cut(s)	114, 120
BstDSI	CCRYGG	1 cut(s)	591
BstEII	GGTNACC	1 cut(s)	584
BstF5I	GGATG	3 cut(s)	249, 261, 303
BstKTI	GATC	1 cut(s)	553
BstMBI	GATC	1 cut(s)	550
BstMCI	CGRYCG	1 cut(s)	60
BstMWI	GCNNNNNNNGC	2 cut(s)	84, 115
BstNI	CCWGG	3 cut(s)	465, 489, 747
BstPI	GGTNACC	1 cut(s)	584
BstSCI	CCNGG	5 cut(s)	255, 463, 487, 609, 745
BstSFI	CTRYAG	1 cut(s)	642
BstSLI	GKGCMC	4 cut(s)	80, 137, 479, 659
BstV1I	GCAGC	2 cut(s)	593, 628
BstX2I	RGATCY	1 cut(s)	550
BstYI	RGATCY	1 cut(s)	550
BstZI	CGGCCG	1 cut(s)	57
BsuRI	GGCC	2 cut(s)	59, 135
BtgI	CCRYGG	1 cut(s)	591
BtsCI	GGATG	3 cut(s)	249, 261, 303
BtsI	GCAGTG	1 cut(s)	651
BtsIMutI	CAGTG	7 cut(s)	219, 348, 390, 405, 432, 527, 651
BveI	ACCTGC	1 cut(s)	764
Cac8I	GCNNGC	2 cut(s)	544, 618
Cfr13I	GGNCC	2 cut(s)	133, 134
CviAII	CATG	1 cut(s)	40
DdeI	CTNAG	2 cut(s)	114, 120
DpnI	GATC	1 cut(s)	552
DpnII	GATC	1 cut(s)	550
EaeI	YGGCCR	1 cut(s)	57
EagI	CGGCCG	1 cut(s)	57
Eam1104I	CTCTTC	1 cut(s)	32
EarI	CTCTTC	1 cut(s)	32
Ecl136II	GAGCTC	1 cut(s)	715
EclXI	CGGCCG	1 cut(s)	57
Eco130I	CCWWGG	2 cut(s)	129, 504
Eco24I	GRGCYC	5 cut(s)	137, 464, 582, 717, 740
Eco52I	CGGCCG	1 cut(s)	57
Eco53kI	GAGCTC	1 cut(s)	715
Eco57I	CTGAAG	1 cut(s)	551
Eco88I	CYCGRG	2 cut(s)	71, 457
Eco91I	GGTNACC	1 cut(s)	584
EcoICRI	GAGCTC	1 cut(s)	715
EcoO109I	RGGNCCY	2 cut(s)	133, 134
EcoO65I	GGTNACC	1 cut(s)	584
EcoRII	CCWGG	3 cut(s)	463, 487, 745
EcoT14I	CCWWGG	2 cut(s)	129, 504
EcoT38I	GRGCYC	5 cut(s)	137, 464, 582, 717, 740
ErhI	CCWWGG	2 cut(s)	129, 504
FaeI	CATG	1 cut(s)	43
FaiI	YATR	1 cut(s)	41
FaqI	GGGAC	5 cut(s)	131, 164, 179, 481, 683
FatI	CATG	1 cut(s)	39
Fnu4HI	GCNGC	4 cut(s)	60, 88, 607, 642
FokI	GGATG	3 cut(s)	236, 248, 290
FriOI	GRGCYC	5 cut(s)	137, 464, 582, 717, 740
Fsp4HI	GCNGC	4 cut(s)	60, 88, 607, 642
FspBI	CTAG	1 cut(s)	766
GluI	GCNGC	4 cut(s)	60, 88, 607, 642
GsuI	CTGGAG	1 cut(s)	381
HaeIII	GGCC	2 cut(s)	59, 135
HapII	CCGG	2 cut(s)	257, 611
Hin1II	CATG	1 cut(s)	43
HindIII	AAGCTT	1 cut(s)	674
HinfI	GANTC	5 cut(s)	5, 67, 346, 403, 433
HpaII	CCGG	2 cut(s)	257, 611
HphI	GGTGA	5 cut(s)	238, 436, 596, 607, 745
Hpy166II	GTNNAC	4 cut(s)	14, 571, 598, 657
Hpy188I	TCNGA	2 cut(s)	66, 539
Hpy188III	TCNNGA	1 cut(s)	710
Hpy8I	GTNNAC	4 cut(s)	14, 571, 598, 657
Hpy99I	CGWCG	1 cut(s)	317
HpyCH4III	ACNGT	3 cut(s)	145, 193, 474
HpyCH4IV	ACGT	1 cut(s)	573
HpyCH4V	TGCA	2 cut(s)	644, 657
HpyF10VI	GCNNNNNNNGC	2 cut(s)	84, 115
HpyF3I	CTNAG	2 cut(s)	114, 120
HpySE526I	ACGT	1 cut(s)	573
Hsp92II	CATG	1 cut(s)	43
Kzo9I	GATC	1 cut(s)	550
LmnI	GCTCC	4 cut(s)	67, 505, 539, 720
Lsp1109I	GCAGC	2 cut(s)	593, 628
MaeI	CTAG	1 cut(s)	766
MaeII	ACGT	1 cut(s)	573
MaeIII	GTNAC	4 cut(s)	187, 214, 584, 721
MalI	GATC	1 cut(s)	552
MbiI	CCGCTC	1 cut(s)	62
MboI	GATC	1 cut(s)	550
MboII	GAAGA	4 cut(s)	19, 22, 28, 685
MflI	RGATCY	1 cut(s)	550
MhlI	GDGCHC	9 cut(s)	80, 137, 464, 479, 582, 618, 659, 717, 740
MlyI	GAGTC	1 cut(s)	14
MseI	TTAA	2 cut(s)	666, 672
MslI	CAYNNNNRTG	1 cut(s)	38
MspCI	CTTAAG	1 cut(s)	671
MspI	CCGG	2 cut(s)	257, 611
MspR9I	CCNGG	5 cut(s)	257, 465, 489, 611, 747
MvaI	CCWGG	3 cut(s)	465, 489, 747
MwoI	GCNNNNNNNGC	2 cut(s)	84, 115
NciI	CCSGG	2 cut(s)	257, 611
NdeII	GATC	1 cut(s)	550
NlaIII	CATG	1 cut(s)	43
NlaIV	GGNNCC	2 cut(s)	77, 135
NmeAIII	GCCGAG	1 cut(s)	35
NmuCI	GTSAC	4 cut(s)	187, 214, 584, 721
PaqCI	CACCTGC	1 cut(s)	764
PasI	CCCWGGG	1 cut(s)	464
PcsI	WCGNNNNNNNCGW	3 cut(s)	62, 543, 588
PfeI	GAWTC	4 cut(s)	67, 346, 403, 433
PflMI	CCANNNNNTGG	1 cut(s)	488
PkrI	GCNGC	4 cut(s)	61, 89, 608, 643
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
Psp124BI	GAGCTC	1 cut(s)	717
Psp6I	CCWGG	3 cut(s)	463, 487, 745
PspEI	GGTNACC	1 cut(s)	584
PspGI	CCWGG	3 cut(s)	463, 487, 745
PspN4I	GGNNCC	2 cut(s)	77, 135
PspOMI	GGGCCC	1 cut(s)	133
PspPI	GGNCC	2 cut(s)	133, 134
PstI	CTGCAG	1 cut(s)	646
PsuI	RGATCY	1 cut(s)	550
RseI	CAYNNNNRTG	1 cut(s)	38
SacI	GAGCTC	1 cut(s)	717
SaqAI	TTAA	2 cut(s)	666, 672
SatI	GCNGC	4 cut(s)	60, 88, 607, 642
Sau3AI	GATC	1 cut(s)	550
Sau96I	GGNCC	2 cut(s)	133, 134
SchI	GAGTC	1 cut(s)	14
ScrFI	CCNGG	5 cut(s)	257, 465, 489, 611, 747
SduI	GDGCHC	9 cut(s)	80, 137, 464, 479, 582, 618, 659, 717, 740
SfcI	CTRYAG	1 cut(s)	642
SmiMI	CAYNNNNRTG	1 cut(s)	38
SmlI	CTYRAG	2 cut(s)	671, 710
SmoI	CTYRAG	2 cut(s)	671, 710
SsiI	CCGC	2 cut(s)	60, 87
SspMI	CTAG	1 cut(s)	766
SstI	GAGCTC	1 cut(s)	717
StyD4I	CCNGG	5 cut(s)	255, 463, 487, 609, 745
StyI	CCWWGG	2 cut(s)	129, 504
TaaI	ACNGT	3 cut(s)	145, 193, 474
TaiI	ACGT	1 cut(s)	576
TaqI	TCGA	1 cut(s)	522
TauI	GCSGC	2 cut(s)	62, 90
TfiI	GAWTC	4 cut(s)	67, 346, 403, 433
Tru1I	TTAA	2 cut(s)	666, 672
Tru9I	TTAA	2 cut(s)	666, 672
TscAI	CASTG	7 cut(s)	219, 348, 390, 405, 432, 534, 651
TseFI	GTSAC	4 cut(s)	187, 214, 584, 721
TseI	GCWGC	2 cut(s)	606, 641
Tsp45I	GTSAC	4 cut(s)	187, 214, 584, 721
TspDTI	ATGAA	2 cut(s)	22, 28
TspRI	CASTG	7 cut(s)	219, 348, 390, 405, 432, 534, 651
Van91I	CCANNNNNTGG	1 cut(s)	488
Vha464I	CTTAAG	1 cut(s)	671
VneI	GTGCAC	1 cut(s)	655
XspI	CTAG	1 cut(s)	766

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.