Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0007454

Physical Location & Seq

Genomic Coordinates Reverse (-)

15920040 .. 15925266

Gene Structure 5227 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1200200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1491 bp

ATGAGTAAGAGTAATTTGGGGTCCATCAGAAGTTCTGATCTCATTGATGCAAAGCTTGAAGAGCATCAGATGTGCGGATCCAAGCAGTGTCCCGGTTGTGGACACAAGTTCGAAGGAAAGCCGGACTGGTTAGGTCTACCAGCAGGAGTGAAATTTGATCCAACAGATCAAGAACTAATTGAACACCTTGAAGCAAAGGTAGAAGCCAAAGACTCCAAATCTCACCCTTTGATTGATGAATTCATCCCTACAATTGAAGGAGAAGATGGGATTTGTTACACCCATCCTGAAAAACTTCCAGGAGTCACAAGAGATGGGTTGAGCAGGCACTTCTTCCATAGGCCATCAAAAGCCTACACAACTGGGACAAGAAAGAGAAGAAAAATCCAAACAGAATGTGACTTGCAAGGAGGGGAAACAAGGTGGCACAAGACAGGCAAGACCAGGCCAGTCATGGTGAATGGAAAACAAAAAGGCTGCAAGAAAATTCTAGTCCTCTACACTAACTTTGGGAAAAACCGAAAACCCGAAAAAACGAATTGGGTGATGCACCAATACCATCTTGGGCAGCATGAGGAGGAGAAAGAAGGAGAGCTTGTGGTGTCAAAGATATTCTATCAGACTCAGCCAAGGCAATGCAACTGGTCTGATAGAGCTAGTGCTACAACTGGAGAAGGAAGCAGTGATATTATGGCTACTACTAGCAGAAGAGATAGTGGGAGTGGGAGTTGTTCTTCTAAGGAAATATTACCTTCTCATCCTCATAGAGATCATGATCAAATGGCGGCAACAGCAGTAGCTGCGGTTGCTTCTGCTGCTCCAATTTCAAGCTACAGTGGCATTGACATTCATCAGCTGAAGTCAGACCACTTCAGCTTTGGCCCCTTCAGAAAAAGCTTTGATGAGGTGGGGATAGGAGGAGAGGCGTCGACGGCAAGGGAAAGACCAGAAACTGGCACGTGCGAAGAGATACAAGAGCACCACCAGAGATCAGTAGCAGTACAGCGTCATCATCACCATCATCATCATATGGGCCATGAACTAGTACCTGATCATCAGCAGCAGCATCAACATGAACATCAACAACAGCAGCAGCAGCAACTGCACCATCATCAACAAATTGCAACAGCTACAGCTTTCCACATCAATCGCCCTTCACATCCCATTTCCACCATCATCTCTCCATCTCCTCTCCACCACACCTCCATCATTCTTGATCAGGACTCCTACTCCCGGTTGATACTTCAAAACGAAAATTTCCAGGCACAGCAACAACAACAGCAGCATCAACAGCAGCAACACCACAACCAACAACAGCATCATAAAATGGGAGATAGGTCTGCATCTGGTTTGGAGGAACTAATAATGGGCTGCACTTCCAGCAGTAGTAATATCAAAGAAGAGTCATCCATGCCAAACCCTCAAGAGGCAGAGTGGATGAAGTACTCTTCCTTCTGGCCTGACCCTGACAACCCAGATCATCATGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000077 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0006950 GO:0006974 GO:0008150 GO:0009314 GO:0009628 GO:0009889 GO:0009987 GO:0010212 GO:0010332 GO:0010468 GO:0010556 GO:0010564 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031570 GO:0033043 GO:0033554 GO:0040020 GO:0043565 GO:0045786 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051252 GO:0051445 GO:0051716 GO:0051726 GO:0051783 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

497

Amino Acids

56.16

Weight (kDa)

6.57

Isoelectric Point (pI)

56.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	47 - 188	5.7e-26	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007454)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29230 AT4G29230 AT4G29230
fragaria_vesca	FvH4_1g06530 FvH4_1g06530
malus_domestica	MD02G1068700.v1.1 MD15G1200200.v1.1
prunus_persica	Prupe.7G217000_v2.0.a1 Prupe.7G217000_v2.0.a1 Prupe.7G217000_v2.0.a1
pyrus_communis	pycom02g05440 pycom15g17790
rosa_chinensis	RchiOBHm_Chr2g0092281
rosa_laevigata	RLG00000016293
rosa_multiflora	Rmu_sc0003289.1_g000022
rosa_roxburghii	Rroxscaffold_2G00149300
rosa_rugosa	Rorug02G0024400 Rorug02G0024500 Rorug02G0024600 Rorug02G0024600
rosa_samantha	Rh2AG070300 Rh2BG069800 Rh2CG071000 Rh2DG068800
rosa_wichuraiana	Rw2G006200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	953
AccI	GTMKAC	2 cut(s)	136, 929
AciI	CCGC	3 cut(s)	75, 785, 803
AclWI	GGATC	3 cut(s)	72, 85, 152
AcsI	RAATTY	4 cut(s)	152, 239, 486, 1255
AcuI	CTGAAG	3 cut(s)	856, 871, 878
AcvI	CACGTG	1 cut(s)	960
AcyI	GRCGYC	1 cut(s)	926
AfaI	GTAC	3 cut(s)	1002, 1047, 1445
AfiI	CCNNNNNNNGG	4 cut(s)	98, 953, 1233, 1426
AgsI	TTSAA	6 cut(s)	59, 182, 191, 257, 828, 1247
AhlI	ACTAGT	1 cut(s)	1042
AjnI	CCWGG	3 cut(s)	298, 443, 1260
Alw21I	GWGCWC	1 cut(s)	981
AlwI	GGATC	3 cut(s)	72, 85, 152
AlwNI	CAGNNNCTG	3 cut(s)	800, 953, 1102
AoxI	GGCC	5 cut(s)	341, 446, 880, 1033, 1457
ApoI	RAATTY	4 cut(s)	152, 239, 486, 1255
Asp700I	GAANNNNTTC	1 cut(s)	294
AspS9I	GGNCC	3 cut(s)	21, 881, 1033
AsuC2I	CCSGG	2 cut(s)	93, 1234
AsuHPI	GGTGA	4 cut(s)	215, 469, 556, 1007
AsuII	TTCGAA	1 cut(s)	111
AvaII	GGWCC	1 cut(s)	21
BamHI	GGATCC	1 cut(s)	77
BarI	GAAGNNNNNNTAC	2 cut(s)	1436, 1468
BbrPI	CACGTG	1 cut(s)	960
Bbv12I	GWGCWC	1 cut(s)	981
BceAI	ACGGC	1 cut(s)	948
BciT130I	CCWGG	3 cut(s)	300, 445, 1262
BclI	TGATCA	3 cut(s)	775, 1051, 1216
BcnI	CCSGG	2 cut(s)	93, 1234
BcuI	ACTAGT	1 cut(s)	1042
BfaI	CTAG	4 cut(s)	491, 657, 702, 1043
BfmI	CTRYAG	2 cut(s)	832, 1131
BmcAI	AGTACT	1 cut(s)	1445
Bme1390I	CCNGG	5 cut(s)	93, 300, 445, 1234, 1262
Bme18I	GGWCC	1 cut(s)	21
BmgT120I	GGNCC	3 cut(s)	21, 881, 1033
BmiI	GGNNCC	3 cut(s)	22, 79, 883
BmrFI	CCNGG	5 cut(s)	93, 300, 445, 1234, 1262
BmrI	ACTGGG	1 cut(s)	372
BmsI	GCATC	7 cut(s)	37, 73, 537, 1075, 1294, 1327, 1352
BmuI	ACTGGG	1 cut(s)	372
BpmI	CTGGAG	1 cut(s)	690
Bpu14I	TTCGAA	1 cut(s)	111
BpuEI	CTTGAG	1 cut(s)	1407
BpuMI	CCSGG	2 cut(s)	93, 1234
BsaAI	YACGTR	1 cut(s)	960
BsaBI	GATNNNNATC	1 cut(s)	774
BsaHI	GRCGYC	1 cut(s)	926
BsaJI	CCNNGG	1 cut(s)	629
BsaXI	ACNNNNNCTCC	8 cut(s)	582, 612, 712, 742, 1187, 1214, 1217, 1244
Bsc4I	CCNNNNNNNGG	4 cut(s)	98, 953, 1233, 1426
Bse1I	ACTGG	6 cut(s)	131, 367, 449, 647, 673, 958
Bse3DI	GCAATG	1 cut(s)	641
Bse8I	GATNNNNATC	1 cut(s)	774
BseBI	CCWGG	3 cut(s)	300, 445, 1262
BseDI	CCNNGG	1 cut(s)	629
BseGI	GGATG	6 cut(s)	243, 283, 757, 1159, 1406, 1443
BseJI	GATNNNNATC	1 cut(s)	774
BseLI	CCNNNNNNNGG	4 cut(s)	98, 953, 1233, 1426
BseMI	GCAATG	1 cut(s)	641
BseMII	CTCAG	1 cut(s)	638
BseNI	ACTGG	6 cut(s)	131, 367, 449, 647, 673, 958
BseRI	GAGGAG	4 cut(s)	590, 593, 933, 1179
BsgI	GTGCAG	2 cut(s)	1088, 1357
BshFI	GGCC	5 cut(s)	343, 448, 882, 1035, 1459
BsiHKAI	GWGCWC	1 cut(s)	981
BsiSI	CCGG	3 cut(s)	93, 122, 1234
BslFI	GGGAC	2 cut(s)	75, 379
BslI	CCNNNNNNNGG	4 cut(s)	98, 953, 1233, 1426
BsmFI	GGGAC	2 cut(s)	75, 379
BsnI	GGCC	5 cut(s)	343, 448, 882, 1035, 1459
Bsp119I	TTCGAA	1 cut(s)	111
Bsp1286I	GDGCHC	1 cut(s)	981
BspACI	CCGC	3 cut(s)	75, 785, 803
BspANI	GGCC	5 cut(s)	343, 448, 882, 1035, 1459
BspCNI	CTCAG	1 cut(s)	637
BspHI	TCATGA	1 cut(s)	772
BspLI	GGNNCC	3 cut(s)	22, 79, 883
BspPI	GGATC	3 cut(s)	72, 85, 152
BspQI	GCTCTTC	1 cut(s)	54
BspT104I	TTCGAA	1 cut(s)	111
BsrDI	GCAATG	1 cut(s)	641
BsrI	ACTGG	6 cut(s)	131, 367, 449, 647, 673, 958
BssECI	CCNNGG	1 cut(s)	629
BssNI	GRCGYC	1 cut(s)	926
BssT1I	CCWWGG	1 cut(s)	629
Bst2UI	CCWGG	3 cut(s)	300, 445, 1262
Bst4CI	ACNGT	1 cut(s)	836
Bst6I	CTCTTC	5 cut(s)	54, 703, 960, 1395, 1453
BstACI	GRCGYC	1 cut(s)	926
BstAPI	GCANNNNNTGC	2 cut(s)	800, 1102
BstBAI	YACGTR	1 cut(s)	960
BstBI	TTCGAA	1 cut(s)	111
BstC8I	GCNNGC	1 cut(s)	326
BstDEI	CTNAG	2 cut(s)	624, 738
BstF5I	GGATG	6 cut(s)	243, 283, 757, 1159, 1406, 1443
BstNI	CCWGG	3 cut(s)	300, 445, 1262
BstSCI	CCNGG	5 cut(s)	91, 298, 443, 1232, 1260
BstSFI	CTRYAG	2 cut(s)	832, 1131
BstX2I	RGATCY	1 cut(s)	77
BstYI	RGATCY	1 cut(s)	77
BsuRI	GGCC	5 cut(s)	343, 448, 882, 1035, 1459
BtsCI	GGATG	6 cut(s)	243, 283, 757, 1159, 1406, 1443
BtsI	GCAGTG	2 cut(s)	92, 688
BtsIMutI	CAGTG	3 cut(s)	92, 688, 841
Cac8I	GCNNGC	1 cut(s)	326
CaiI	CAGNNNCTG	3 cut(s)	800, 953, 1102
CciI	TCATGA	1 cut(s)	772
Cfr13I	GGNCC	3 cut(s)	21, 881, 1033
CseI	GACGC	2 cut(s)	915, 995
Csp6I	GTAC	3 cut(s)	1001, 1046, 1444
CviAII	CATG	7 cut(s)	454, 572, 773, 1037, 1073, 1411, 1484
CviQI	GTAC	3 cut(s)	1001, 1046, 1444
DdeI	CTNAG	2 cut(s)	624, 738
Eam1104I	CTCTTC	5 cut(s)	54, 703, 960, 1395, 1453
EarI	CTCTTC	5 cut(s)	54, 703, 960, 1395, 1453
Eco130I	CCWWGG	1 cut(s)	629
Eco47I	GGWCC	1 cut(s)	21
Eco57I	CTGAAG	3 cut(s)	856, 871, 878
Eco72I	CACGTG	1 cut(s)	960
EcoRI	GAATTC	1 cut(s)	239
EcoRII	CCWGG	3 cut(s)	298, 443, 1260
EcoT14I	CCWWGG	1 cut(s)	629
ErhI	CCWWGG	1 cut(s)	629
FaeI	CATG	7 cut(s)	457, 575, 776, 1040, 1076, 1414, 1487
FalI	AAGNNNNNCTT	2 cut(s)	579, 611
FaqI	GGGAC	2 cut(s)	75, 379
FatI	CATG	7 cut(s)	453, 571, 772, 1036, 1072, 1410, 1483
FauNDI	CATATG	1 cut(s)	1029
FbaI	TGATCA	3 cut(s)	775, 1051, 1216
FblI	GTMKAC	2 cut(s)	136, 929
FokI	GGATG	6 cut(s)	230, 270, 744, 1146, 1393, 1450
FspBI	CTAG	4 cut(s)	491, 657, 702, 1043
GsuI	CTGGAG	1 cut(s)	690
HaeIII	GGCC	5 cut(s)	343, 448, 882, 1035, 1459
HapII	CCGG	3 cut(s)	93, 122, 1234
HgaI	GACGC	2 cut(s)	915, 995
Hin1I	GRCGYC	1 cut(s)	926
Hin1II	CATG	7 cut(s)	457, 575, 776, 1040, 1076, 1414, 1487
HincII	GTYRAC	1 cut(s)	930
HindII	GTYRAC	1 cut(s)	930
HindIII	AAGCTT	2 cut(s)	53, 895
HinfI	GANTC	5 cut(s)	212, 303, 622, 1223, 1403
HpaII	CCGG	3 cut(s)	93, 122, 1234
HphI	GGTGA	4 cut(s)	215, 469, 556, 1007
Hpy166II	GTNNAC	3 cut(s)	101, 137, 930
Hpy188I	TCNGA	7 cut(s)	29, 37, 69, 621, 649, 865, 890
Hpy188III	TCNNGA	6 cut(s)	170, 287, 773, 1214, 1220, 1424
Hpy8I	GTNNAC	3 cut(s)	101, 137, 930
Hpy99I	CGWCG	2 cut(s)	931, 934
HpyAV	CCTTC	8 cut(s)	107, 251, 581, 668, 762, 895, 1164, 1462
HpyCH4III	ACNGT	1 cut(s)	836
HpyCH4IV	ACGT	1 cut(s)	959
HpyCH4V	TGCA	9 cut(s)	50, 406, 480, 550, 639, 1105, 1124, 1343, 1374
HpyF3I	CTNAG	2 cut(s)	624, 738
HpySE526I	ACGT	1 cut(s)	959
Hsp92I	GRCGYC	1 cut(s)	926
Hsp92II	CATG	7 cut(s)	457, 575, 776, 1040, 1076, 1414, 1487
Ksp22I	TGATCA	3 cut(s)	775, 1051, 1216
LguI	GCTCTTC	1 cut(s)	54
LmnI	GCTCC	1 cut(s)	823
LweI	GCATC	7 cut(s)	37, 73, 537, 1075, 1294, 1327, 1352
MaeI	CTAG	4 cut(s)	491, 657, 702, 1043
MaeII	ACGT	1 cut(s)	959
MaeIII	GTNAC	3 cut(s)	275, 304, 398
MboII	GAAGA	9 cut(s)	71, 275, 325, 390, 720, 726, 977, 1412, 1440
MfeI	CAATTG	1 cut(s)	252
MflI	RGATCY	1 cut(s)	77
MhlI	GDGCHC	1 cut(s)	981
MlyI	GAGTC	5 cut(s)	206, 312, 616, 1217, 1412
MmeI	TCCRAC	1 cut(s)	185
MroXI	GAANNNNTTC	1 cut(s)	294
MslI	CAYNNNNRTG	1 cut(s)	1071
MspA1I	CMGCKG	1 cut(s)	856
MspI	CCGG	3 cut(s)	93, 122, 1234
MspR9I	CCNGG	5 cut(s)	93, 300, 445, 1234, 1262
MunI	CAATTG	1 cut(s)	252
MvaI	CCWGG	3 cut(s)	300, 445, 1262
NciI	CCSGG	2 cut(s)	93, 1234
NdeI	CATATG	1 cut(s)	1029
NlaIII	CATG	7 cut(s)	457, 575, 776, 1040, 1076, 1414, 1487
NlaIV	GGNNCC	3 cut(s)	22, 79, 883
NmuCI	GTSAC	2 cut(s)	304, 398
NspV	TTCGAA	1 cut(s)	111
PagI	TCATGA	1 cut(s)	772
PciSI	GCTCTTC	1 cut(s)	54
PdmI	GAANNNNTTC	1 cut(s)	294
PflMI	CCANNNNNTGG	1 cut(s)	953
PfoI	TCCNGGA	1 cut(s)	298
PleI	GAGTC	5 cut(s)	206, 311, 616, 1217, 1411
PmaCI	CACGTG	1 cut(s)	960
PmlI	CACGTG	1 cut(s)	960
PpsI	GAGTC	5 cut(s)	206, 311, 616, 1217, 1411
Ppu21I	YACGTR	1 cut(s)	960
Psp6I	CCWGG	3 cut(s)	298, 443, 1260
PspCI	CACGTG	1 cut(s)	960
PspGI	CCWGG	3 cut(s)	298, 443, 1260
PspN4I	GGNNCC	3 cut(s)	22, 79, 883
PspPI	GGNCC	3 cut(s)	21, 881, 1033
PstNI	CAGNNNCTG	3 cut(s)	800, 953, 1102
PsuI	RGATCY	1 cut(s)	77
PvuII	CAGCTG	1 cut(s)	856
RsaI	GTAC	3 cut(s)	1002, 1047, 1445
RsaNI	GTAC	3 cut(s)	1001, 1046, 1444
RseI	CAYNNNNRTG	1 cut(s)	1071
SalI	GTCGAC	1 cut(s)	928
SapI	GCTCTTC	1 cut(s)	54
Sau96I	GGNCC	3 cut(s)	21, 881, 1033
ScaI	AGTACT	1 cut(s)	1445
SchI	GAGTC	5 cut(s)	206, 312, 616, 1217, 1412
ScrFI	CCNGG	5 cut(s)	93, 300, 445, 1234, 1262
SduI	GDGCHC	1 cut(s)	981
SfaNI	GCATC	7 cut(s)	37, 73, 537, 1075, 1294, 1327, 1352
SfcI	CTRYAG	2 cut(s)	832, 1131
SfuI	TTCGAA	1 cut(s)	111
SgrDI	CGTCGACG	1 cut(s)	928
SinI	GGWCC	1 cut(s)	21
SmiMI	CAYNNNNRTG	1 cut(s)	1071
SmlI	CTYRAG	1 cut(s)	1422
SmoI	CTYRAG	1 cut(s)	1422
SpeI	ACTAGT	1 cut(s)	1042
SsiI	CCGC	3 cut(s)	75, 785, 803
SspI	AATATT	1 cut(s)	747
SspMI	CTAG	4 cut(s)	491, 657, 702, 1043
StyD4I	CCNGG	5 cut(s)	91, 298, 443, 1232, 1260
StyI	CCWWGG	1 cut(s)	629
TaaI	ACNGT	1 cut(s)	836
TaiI	ACGT	1 cut(s)	962
TaqI	TCGA	2 cut(s)	111, 929
TatI	WGTACW	2 cut(s)	1000, 1443
TauI	GCSGC	1 cut(s)	788
TscAI	CASTG	3 cut(s)	92, 688, 841
TseFI	GTSAC	2 cut(s)	304, 398
Tsp45I	GTSAC	2 cut(s)	304, 398
TspDTI	ATGAA	6 cut(s)	232, 252, 839, 1053, 1089, 1454
TspRI	CASTG	3 cut(s)	92, 688, 841
Van91I	CCANNNNNTGG	1 cut(s)	953
VpaK11BI	GGWCC	1 cut(s)	21
XapI	RAATTY	4 cut(s)	152, 239, 486, 1255
XcmI	CCANNNNNNNNNTGG	3 cut(s)	451, 560, 875
XmiI	GTMKAC	2 cut(s)	136, 929
XmnI	GAANNNNTTC	1 cut(s)	294
XspI	CTAG	4 cut(s)	491, 657, 702, 1043
ZrmI	AGTACT	1 cut(s)	1445

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.