AT4G29260

acid phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0012044
Physical Location & Seq
Reverse (-)
14422152 .. 14423603
1452 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G29260.1

Sequence Viewer

Length: 768 bp
ATGGCGTCTCTTCGTAGCCTTTCGATTTGGTTCTTCTTCTTCTTCGTCTTCGTCTTCTTAATCAATCCCTCCATTTCTATTCGAACTTCCTTCATCAAGCTTCCCGGAAGCGACGGATCTCGCTACTGCGACAGCTGGAGATTAGCCGCCGAGACCAATAACGTCGGAACTTGGGATCTGATTCCGTCAATCTGCGTGGATTCCGTCGCCGAGTATCTTAACGGAGACCAGTTTTTATCCGATTACAGTGTCATCGTCGATTATGCTCTCGCGTTTGCGAAATCGGTTGAAATTTCCGGCGACGGCAAGGACGTGTGGATCTTCGATATCGACGAGACGCTTCTCACGAATATTGACTACTACAAGGCTCATGGTTACGGGTCTGAACCGTATGACGATAATAAATTTAGTGAGTGGGTGGAACAAGGAACAGCTCCAGCTTTTGATGCGAGCTTGAGACTGTACAATGCTCTCAAGAAACTTGGTTTCACTATCATTTTGCTAACCGGTCGGGACGAGCATCAAAGGACTTCCACCGAGACAAATCTCCGGGATGCCGGTTATTCCGGTTGGGAACGTCTCCTCTTGAGAGGTCCAAATGATCAAGGGAAGTCAGCTACAAATTACAAATCCGAGCAGCGATCGAAACTGATTGAGGAAGGTTTCAAAATCCGTGGCAATAGCGGTGATCAATGGAGTGACTTGCAAGGTTTTGCCGTGGCTGATCGTTCTTTCAAAGTCCCAAATCCCATGTACTACATTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acid_phosphat_B

Protein Analysis

255

Amino Acids

28.91

Weight (kDa)

4.81

Isoelectric Point (pI)

28.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acid_phosphat_B PF03767 29 - 255 1.3e-87 HAD superfamily, subfamily IIIB (Acid phosphatase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012044)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G29260 AT4G29270
fragaria_vesca FvH4_1g06500
malus_domestica MD02G1068300.v1.1
prunus_persica Prupe.7G217300_v2.0.a1
pyrus_communis pycom02g05410 pycom08g17150 pycom15g17740
rosa_chinensis RchiOBHm_Chr2g0092251
rosa_laevigata RLG00000016290
rosa_multiflora Rmu_sc0000524.1_g000032 Rmu_sc0030540.1_g000001
rosa_roxburghii Rroxscaffold_2G00149330
rosa_rugosa Rorug02G0024100
rosa_samantha Rh2AG069900 Rh2BG069400 Rh2CG070600 Rh2DG068400
rosa_wichuraiana Rw2G006230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 272
AciI CCGC 2 cut(s) 147, 684
AclWI GGATC 3 cut(s) 124, 183, 326
AcsI RAATTY 2 cut(s) 291, 404
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 2 cut(s) 464, 755
AflIII ACRYGT 1 cut(s) 312
AgeI ACCGGT 1 cut(s) 506
AgsI TTSAA 3 cut(s) 290, 667, 736
AjiI CACGTC 1 cut(s) 313
AluBI AGCT 6 cut(s) 100, 135, 434, 440, 453, 617
AluI AGCT 6 cut(s) 100, 135, 434, 440, 453, 617
Alw26I GTCTC 7 cut(s) 12, 146, 219, 329, 451, 533, 584
AlwI GGATC 3 cut(s) 124, 183, 326
ApeKI GCWGC 1 cut(s) 637
ApoI RAATTY 2 cut(s) 291, 404
AsiGI ACCGGT 1 cut(s) 506
AspS9I GGNCC 1 cut(s) 593
AsuC2I CCSGG 2 cut(s) 105, 551
AsuHPI GGTGA 1 cut(s) 698
AsuII TTCGAA 1 cut(s) 82
AvaII GGWCC 1 cut(s) 593
BbsI GAAGAC 2 cut(s) 40, 46
BbvI GCAGC 1 cut(s) 649
BceAI ACGGC 2 cut(s) 319, 701
BclI TGATCA 2 cut(s) 601, 688
BcnI CCSGG 2 cut(s) 105, 551
BcoDI GTCTC 7 cut(s) 12, 146, 219, 329, 451, 533, 584
BisI GCNGC 2 cut(s) 147, 638
BlsI GCNGC 2 cut(s) 148, 639
Bme1390I CCNGG 2 cut(s) 105, 551
Bme18I GGWCC 1 cut(s) 593
BmgBI CACGTC 1 cut(s) 313
BmgT120I GGNCC 1 cut(s) 593
BmrFI CCNGG 2 cut(s) 105, 551
BmsI GCATC 3 cut(s) 436, 529, 544
BpiI GAAGAC 2 cut(s) 40, 46
BpmI CTGGAG 2 cut(s) 157, 420
Bpu14I TTCGAA 1 cut(s) 82
BpuEI CTTGAG 3 cut(s) 458, 475, 607
BpuMI CCSGG 2 cut(s) 105, 551
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 2 cut(s) 146, 219
BsaJI CCNNGG 2 cut(s) 673, 717
BsaWI WCCGGW 2 cut(s) 506, 566
Bse118I RCCGGY 2 cut(s) 506, 557
Bse1I ACTGG 1 cut(s) 229
BseDI CCNNGG 2 cut(s) 673, 717
BseGI GGATG 1 cut(s) 559
BseNI ACTGG 1 cut(s) 229
BseRI GAGGAG 1 cut(s) 572
BseXI GCAGC 1 cut(s) 649
Bsh1236I CGCG 1 cut(s) 272
Bsh1285I CGRYCG 2 cut(s) 511, 644
BshTI ACCGGT 1 cut(s) 506
BsiEI CGRYCG 2 cut(s) 511, 644
BsiSI CCGG 6 cut(s) 105, 297, 507, 550, 558, 567
BslFI GGGAC 2 cut(s) 527, 725
BsmAI GTCTC 7 cut(s) 12, 146, 219, 329, 451, 533, 584
BsmBI CGTCTC 3 cut(s) 12, 329, 584
BsmFI GGGAC 2 cut(s) 527, 725
Bso31I GGTCTC 2 cut(s) 146, 219
Bsp119I TTCGAA 1 cut(s) 82
Bsp1407I TGTACA 1 cut(s) 462
Bsp143I GATC 7 cut(s) 116, 175, 318, 601, 641, 688, 724
BspACI CCGC 2 cut(s) 147, 684
BspFNI CGCG 1 cut(s) 272
BspPI GGATC 3 cut(s) 124, 183, 326
BspT104I TTCGAA 1 cut(s) 82
BspTNI GGTCTC 2 cut(s) 146, 219
BsrFI RCCGGY 2 cut(s) 506, 557
BsrGI TGTACA 1 cut(s) 462
BsrI ACTGG 1 cut(s) 229
BssAI RCCGGY 2 cut(s) 506, 557
BssECI CCNNGG 2 cut(s) 673, 717
BssMI GATC 7 cut(s) 116, 175, 318, 601, 641, 688, 724
BssNI GRCGYC 1 cut(s) 5
Bst4CI ACNGT 3 cut(s) 248, 390, 462
Bst6I CTCTTC 1 cut(s) 15
BstACI GRCGYC 1 cut(s) 5
BstAUI TGTACA 1 cut(s) 462
BstBI TTCGAA 1 cut(s) 82
BstC8I GCNNGC 1 cut(s) 451
BstDSI CCRYGG 2 cut(s) 673, 717
BstF5I GGATG 1 cut(s) 559
BstFNI CGCG 1 cut(s) 272
BstKTI GATC 7 cut(s) 119, 178, 321, 604, 644, 691, 727
BstMAI GTCTC 7 cut(s) 12, 146, 219, 329, 451, 533, 584
BstMBI GATC 7 cut(s) 116, 175, 318, 601, 641, 688, 724
BstMCI CGRYCG 2 cut(s) 511, 644
BstMWI GCNNNNNNNGC 1 cut(s) 446
BstSCI CCNGG 2 cut(s) 103, 549
BstUI CGCG 1 cut(s) 272
BstV1I GCAGC 1 cut(s) 649
BstV2I GAAGAC 2 cut(s) 40, 46
BstX2I RGATCY 3 cut(s) 116, 175, 318
BstYI RGATCY 3 cut(s) 116, 175, 318
BtgI CCRYGG 2 cut(s) 673, 717
BtrI CACGTC 1 cut(s) 313
BtsCI GGATG 1 cut(s) 559
BtsIMutI CAGTG 1 cut(s) 253
Cac8I GCNNGC 1 cut(s) 451
Cfr10I RCCGGY 2 cut(s) 506, 557
Cfr13I GGNCC 1 cut(s) 593
CseI GACGC 1 cut(s) 346
Csp6I GTAC 2 cut(s) 463, 754
CspAI ACCGGT 1 cut(s) 506
CspCI CAANNNNNGTGG 4 cut(s) 177, 212, 655, 690
CviAII CATG 2 cut(s) 371, 751
CviQI GTAC 2 cut(s) 463, 754
DpnI GATC 7 cut(s) 118, 177, 320, 603, 643, 690, 726
DpnII GATC 7 cut(s) 116, 175, 318, 601, 641, 688, 724
Eam1104I CTCTTC 1 cut(s) 15
EarI CTCTTC 1 cut(s) 15
Eco31I GGTCTC 2 cut(s) 146, 219
Eco32I GATATC 1 cut(s) 328
Eco47I GGWCC 1 cut(s) 593
EcoRV GATATC 1 cut(s) 328
Esp3I CGTCTC 3 cut(s) 12, 329, 584
FaeI CATG 2 cut(s) 374, 754
FaiI YATR 4 cut(s) 264, 372, 393, 752
FaqI GGGAC 2 cut(s) 527, 725
FatI CATG 2 cut(s) 370, 750
FbaI TGATCA 2 cut(s) 601, 688
Fnu4HI GCNGC 2 cut(s) 147, 638
FokI GGATG 1 cut(s) 566
Fsp4HI GCNGC 2 cut(s) 147, 638
GluI GCNGC 2 cut(s) 147, 638
GsuI CTGGAG 2 cut(s) 157, 420
HapII CCGG 6 cut(s) 105, 297, 507, 550, 558, 567
HgaI GACGC 1 cut(s) 346
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 2 cut(s) 374, 754
HindIII AAGCTT 1 cut(s) 98
HinfI GANTC 2 cut(s) 181, 200
HpaII CCGG 6 cut(s) 105, 297, 507, 550, 558, 567
HphI GGTGA 1 cut(s) 698
Hpy188I TCNGA 5 cut(s) 167, 180, 241, 385, 634
Hpy188III TCNNGA 4 cut(s) 346, 475, 512, 586
Hpy99I CGWCG 6 cut(s) 116, 167, 209, 260, 305, 335
HpyAV CCTTC 2 cut(s) 100, 653
HpyCH4III ACNGT 3 cut(s) 248, 390, 462
HpyCH4IV ACGT 3 cut(s) 162, 312, 577
HpyCH4V TGCA 1 cut(s) 706
HpyF10VI GCNNNNNNNGC 1 cut(s) 446
HpySE526I ACGT 3 cut(s) 162, 312, 577
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 2 cut(s) 374, 754
Ksp22I TGATCA 2 cut(s) 601, 688
Kzo9I GATC 7 cut(s) 116, 175, 318, 601, 641, 688, 724
LmnI GCTCC 1 cut(s) 439
LpnPI CCDG 9 cut(s) 118, 121, 242, 310, 450, 520, 563, 571, 580
Lsp1109I GCAGC 1 cut(s) 649
LweI GCATC 3 cut(s) 436, 529, 544
MaeII ACGT 3 cut(s) 162, 312, 577
MaeIII GTNAC 2 cut(s) 374, 698
MalI GATC 7 cut(s) 118, 177, 320, 603, 643, 690, 726
MboI GATC 7 cut(s) 116, 175, 318, 601, 641, 688, 724
MboII GAAGA 7 cut(s) 25, 28, 31, 34, 40, 46, 313
MflI RGATCY 3 cut(s) 116, 175, 318
MluCI AATT 3 cut(s) 291, 404, 622
MmeI TCCRAC 1 cut(s) 145
MnlI CCTC 4 cut(s) 79, 584, 593, 649
MseI TTAA 2 cut(s) 59, 219
MspA1I CMGCKG 1 cut(s) 135
MspI CCGG 6 cut(s) 105, 297, 507, 550, 558, 567
MspR9I CCNGG 2 cut(s) 105, 551
MvnI CGCG 1 cut(s) 272
MwoI GCNNNNNNNGC 1 cut(s) 446
NciI CCSGG 2 cut(s) 105, 551
NdeII GATC 7 cut(s) 116, 175, 318, 601, 641, 688, 724
NlaIII CATG 2 cut(s) 374, 754
NmeAIII GCCGAG 2 cut(s) 175, 235
NmuCI GTSAC 1 cut(s) 698
NspV TTCGAA 1 cut(s) 82
PcsI WCGNNNNNNNCGW 3 cut(s) 309, 330, 344
PfeI GAWTC 2 cut(s) 181, 200
PfoI TCCNGGA 2 cut(s) 103, 549
PinAI ACCGGT 1 cut(s) 506
PkrI GCNGC 2 cut(s) 148, 639
Ple19I CGATCG 1 cut(s) 644
PspPI GGNCC 1 cut(s) 593
PsuI RGATCY 3 cut(s) 116, 175, 318
PvuI CGATCG 1 cut(s) 644
PvuII CAGCTG 1 cut(s) 135
RsaI GTAC 2 cut(s) 464, 755
RsaNI GTAC 2 cut(s) 463, 754
SaqAI TTAA 2 cut(s) 59, 219
SatI GCNGC 2 cut(s) 147, 638
Sau3AI GATC 7 cut(s) 116, 175, 318, 601, 641, 688, 724
Sau96I GGNCC 1 cut(s) 593
ScrFI CCNGG 2 cut(s) 105, 551
SfaNI GCATC 3 cut(s) 436, 529, 544
SfuI TTCGAA 1 cut(s) 82
SinI GGWCC 1 cut(s) 593
SmlI CTYRAG 3 cut(s) 454, 473, 586
SmoI CTYRAG 3 cut(s) 454, 473, 586
Sse9I AATT 3 cut(s) 291, 404, 622
SsiI CCGC 2 cut(s) 147, 684
SspI AATATT 1 cut(s) 352
StyD4I CCNGG 2 cut(s) 103, 549
TaaI ACNGT 3 cut(s) 248, 390, 462
TaiI ACGT 3 cut(s) 165, 315, 580
TaqI TCGA 6 cut(s) 23, 82, 258, 324, 330, 644
TasI AATT 3 cut(s) 291, 404, 622
TatI WGTACW 2 cut(s) 462, 753
TauI GCSGC 1 cut(s) 149
TfiI GAWTC 2 cut(s) 181, 200
Tru1I TTAA 2 cut(s) 59, 219
Tru9I TTAA 2 cut(s) 59, 219
TscAI CASTG 1 cut(s) 253
TseFI GTSAC 1 cut(s) 698
TseI GCWGC 1 cut(s) 637
Tsp45I GTSAC 1 cut(s) 698
TspDTI ATGAA 1 cut(s) 82
TspGWI ACGGA 5 cut(s) 129, 174, 193, 237, 662
TspRI CASTG 1 cut(s) 253
VpaK11BI GGWCC 1 cut(s) 593
XapI RAATTY 2 cut(s) 291, 404
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.