Rh2AG069900

acid phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0012044
Physical Location & Seq
Forward (+)
5782799 .. 5785638
2840 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG069900.1

Sequence Viewer

Length: 615 bp
ATGGCCTCCTCCTCCTCCGTCCTTCTCCTCCTCCTCATCATCGTCCTCGTCACCATCCCCGCCTCCCTGTCCCACACCATCCTCCAAATCCTGCCGAACAGACACGCCTCCGAGGACCGCAAGCTCCGCGCCGACGACAACCTCTTCTGCGACAGCTGGCGGTTCTCCGTCGAGACCAACGACGCCGGAACCTGGGACAGCATTCCCTCCAGGTGCGTCGGATTCGTCCAGGACTACATGACCGGCTCCCGGTACGCCTCCGACTCGGCGGCCGTTGCTAATTTCTCGCTGGCGTTCGGTCAGGCGGTGAAGCTCGGCGGCGACGGCAAGGACGCCTGGGTGTTCGATATCGATGAGACTCTGCTGTCCAACTTGCCGTACTATGAGGCCCATGGGTTCGGATCAGTGACATTCGATGAAAAAGCCTTTGATGAGTGGGTGGATTTGGCTGAGGCCCCTGCTATCCTAGCAAGTTTGAATCTGTACAAGGGGCTCCAACGGTTGGGTTTCAAGATTTTCCTGTTGACTGGGCGGAGCGAATTTCAGAGAAATGCCACGGTGAAAAACCTCCTATATTCAGGTTACAGTGACTGGGAGAGGCTGCTACTGAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acid_phosphat_B

Protein Analysis

204

Amino Acids

22.72

Weight (kDa)

4.92

Isoelectric Point (pI)

32.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acid_phosphat_B PF03767 44 - 204 5.2e-52 HAD superfamily, subfamily IIIB (Acid phosphatase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012044)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G29260 AT4G29270
fragaria_vesca FvH4_1g06500
malus_domestica MD02G1068300.v1.1
prunus_persica Prupe.7G217300_v2.0.a1
pyrus_communis pycom02g05410 pycom08g17150 pycom15g17740
rosa_chinensis RchiOBHm_Chr2g0092251
rosa_laevigata RLG00000016290
rosa_multiflora Rmu_sc0000524.1_g000032 Rmu_sc0030540.1_g000001
rosa_roxburghii Rroxscaffold_2G00149330
rosa_rugosa Rorug02G0024100
rosa_samantha Rh2AG069900 Rh2BG069400 Rh2CG070600 Rh2DG068400
rosa_wichuraiana Rw2G006230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 364
AccB7I CCANNNNNTGG 1 cut(s) 502
AccII CGCG 1 cut(s) 129
AciI CCGC 8 cut(s) 60, 118, 127, 160, 269, 305, 318, 532
AclWI GGATC 1 cut(s) 409
AcoI YGGCCR 1 cut(s) 270
AcsI RAATTY 1 cut(s) 539
AcyI GRCGYC 2 cut(s) 183, 333
AfaI GTAC 3 cut(s) 254, 380, 485
AfiI CCNNNNNNNGG 3 cut(s) 192, 249, 502
AgsI TTSAA 2 cut(s) 478, 511
AjnI CCWGG 4 cut(s) 191, 209, 228, 335
AluBI AGCT 3 cut(s) 124, 156, 313
AluI AGCT 3 cut(s) 124, 156, 313
Alw26I GTCTC 2 cut(s) 167, 350
AlwI GGATC 1 cut(s) 409
AlwNI CAGNNNCTG 1 cut(s) 591
AoxI GGCC 4 cut(s) 3, 270, 387, 453
ApeKI GCWGC 1 cut(s) 601
ApoI RAATTY 1 cut(s) 539
AspLEI GCGC 1 cut(s) 131
AspS9I GGNCC 3 cut(s) 115, 388, 454
AsuC2I CCSGG 1 cut(s) 250
AsuHPI GGTGA 3 cut(s) 43, 319, 571
AvaII GGWCC 1 cut(s) 115
BanII GRGCYC 1 cut(s) 495
BbvCI CCTCAGC 1 cut(s) 450
BbvI GCAGC 1 cut(s) 588
BccI CCATC 2 cut(s) 62, 86
BceAI ACGGC 3 cut(s) 257, 340, 361
BciT130I CCWGG 4 cut(s) 193, 211, 230, 337
BcnI CCSGG 1 cut(s) 250
BcoDI GTCTC 2 cut(s) 167, 350
BfaI CTAG 1 cut(s) 467
BisI GCNGC 3 cut(s) 270, 319, 602
BlsI GCNGC 3 cut(s) 271, 320, 603
Bme1390I CCNGG 5 cut(s) 193, 211, 230, 250, 337
Bme18I GGWCC 1 cut(s) 115
BmgT120I GGNCC 3 cut(s) 115, 388, 454
BmiI GGNNCC 4 cut(s) 190, 247, 456, 494
BmrFI CCNGG 5 cut(s) 193, 211, 230, 250, 337
BmrI ACTGGG 2 cut(s) 537, 601
BmuI ACTGGG 2 cut(s) 537, 601
BpmI CTGGAG 1 cut(s) 193
Bpu10I CCTNAGC 1 cut(s) 450
BpuMI CCSGG 1 cut(s) 250
Bsa29I ATCGAT 1 cut(s) 351
BsaHI GRCGYC 2 cut(s) 183, 333
BsaI GGTCTC 1 cut(s) 167
BsaJI CCNNGG 5 cut(s) 111, 192, 336, 391, 555
Bsc4I CCNNNNNNNGG 3 cut(s) 192, 249, 502
Bse118I RCCGGY 1 cut(s) 242
Bse1I ACTGG 2 cut(s) 532, 596
BseBI CCWGG 4 cut(s) 193, 211, 230, 337
BseCI ATCGAT 1 cut(s) 351
BseDI CCNNGG 5 cut(s) 111, 192, 336, 391, 555
BseGI GGATG 2 cut(s) 54, 78
BseLI CCNNNNNNNGG 3 cut(s) 192, 249, 502
BseMII CTCAG 2 cut(s) 441, 599
BseNI ACTGG 2 cut(s) 532, 596
BseRI GAGGAG 4 cut(s) 4, 17, 20, 23
BseX3I CGGCCG 1 cut(s) 270
BseXI GCAGC 1 cut(s) 588
Bsh1236I CGCG 1 cut(s) 129
Bsh1285I CGRYCG 1 cut(s) 273
BshFI GGCC 4 cut(s) 5, 272, 389, 455
BshVI ATCGAT 1 cut(s) 351
BsiEI CGRYCG 1 cut(s) 273
BsiSI CCGG 3 cut(s) 186, 243, 250
BslFI GGGAC 2 cut(s) 55, 209
BslI CCNNNNNNNGG 3 cut(s) 192, 249, 502
BsmAI GTCTC 2 cut(s) 167, 350
BsmFI GGGAC 2 cut(s) 55, 209
BsmI GAATGC 1 cut(s) 201
BsnI GGCC 4 cut(s) 5, 272, 389, 455
Bso31I GGTCTC 1 cut(s) 167
Bsp1286I GDGCHC 1 cut(s) 495
Bsp1407I TGTACA 1 cut(s) 483
Bsp143I GATC 1 cut(s) 401
Bsp19I CCATGG 1 cut(s) 391
BspACI CCGC 8 cut(s) 60, 118, 127, 160, 269, 305, 318, 532
BspANI GGCC 4 cut(s) 5, 272, 389, 455
BspCNI CTCAG 2 cut(s) 442, 600
BspDI ATCGAT 1 cut(s) 351
BspFNI CGCG 1 cut(s) 129
BspLI GGNNCC 4 cut(s) 190, 247, 456, 494
BspPI GGATC 1 cut(s) 409
BspTNI GGTCTC 1 cut(s) 167
BsrFI RCCGGY 1 cut(s) 242
BsrGI TGTACA 1 cut(s) 483
BsrI ACTGG 2 cut(s) 532, 596
BssAI RCCGGY 1 cut(s) 242
BssECI CCNNGG 5 cut(s) 111, 192, 336, 391, 555
BssMI GATC 1 cut(s) 401
BssNI GRCGYC 2 cut(s) 183, 333
BssT1I CCWWGG 1 cut(s) 391
Bst2UI CCWGG 4 cut(s) 193, 211, 230, 337
Bst4CI ACNGT 3 cut(s) 501, 559, 587
Bst6I CTCTTC 1 cut(s) 149
BstACI GRCGYC 2 cut(s) 183, 333
BstAUI TGTACA 1 cut(s) 483
BstC8I GCNNGC 3 cut(s) 122, 158, 291
BstDEI CTNAG 2 cut(s) 450, 608
BstDSI CCRYGG 2 cut(s) 391, 555
BstF5I GGATG 2 cut(s) 54, 78
BstFNI CGCG 1 cut(s) 129
BstHHI GCGC 1 cut(s) 131
BstKTI GATC 1 cut(s) 404
BstMAI GTCTC 2 cut(s) 167, 350
BstMBI GATC 1 cut(s) 401
BstMCI CGRYCG 1 cut(s) 273
BstMWI GCNNNNNNNGC 4 cut(s) 126, 275, 324, 467
BstNI CCWGG 4 cut(s) 193, 211, 230, 337
BstSCI CCNGG 5 cut(s) 191, 209, 228, 248, 335
BstUI CGCG 1 cut(s) 129
BstV1I GCAGC 1 cut(s) 588
BstZI CGGCCG 1 cut(s) 270
Bsu15I ATCGAT 1 cut(s) 351
BsuRI GGCC 4 cut(s) 5, 272, 389, 455
BsuTUI ATCGAT 1 cut(s) 351
BtgI CCRYGG 2 cut(s) 391, 555
BtsCI GGATG 2 cut(s) 54, 78
BtsIMutI CAGTG 2 cut(s) 411, 592
Cac8I GCNNGC 3 cut(s) 122, 158, 291
CaiI CAGNNNCTG 1 cut(s) 591
CfoI GCGC 1 cut(s) 131
Cfr10I RCCGGY 1 cut(s) 242
Cfr13I GGNCC 3 cut(s) 115, 388, 454
ClaI ATCGAT 1 cut(s) 351
CseI GACGC 3 cut(s) 191, 205, 341
Csp6I GTAC 3 cut(s) 253, 379, 484
CviAII CATG 2 cut(s) 238, 392
CviQI GTAC 3 cut(s) 253, 379, 484
DdeI CTNAG 2 cut(s) 450, 608
DpnI GATC 1 cut(s) 403
DpnII GATC 1 cut(s) 401
DrdI GACNNNNNNGTC 1 cut(s) 364
DseDI GACNNNNNNGTC 1 cut(s) 364
EaeI YGGCCR 1 cut(s) 270
EagI CGGCCG 1 cut(s) 270
Eam1104I CTCTTC 1 cut(s) 149
EarI CTCTTC 1 cut(s) 149
EciI GGCGGA 1 cut(s) 547
EclXI CGGCCG 1 cut(s) 270
Eco130I CCWWGG 1 cut(s) 391
Eco24I GRGCYC 1 cut(s) 495
Eco31I GGTCTC 1 cut(s) 167
Eco32I GATATC 1 cut(s) 349
Eco47I GGWCC 1 cut(s) 115
Eco52I CGGCCG 1 cut(s) 270
EcoO109I RGGNCCY 1 cut(s) 454
EcoRII CCWGG 4 cut(s) 191, 209, 228, 335
EcoRV GATATC 1 cut(s) 349
EcoT14I CCWWGG 1 cut(s) 391
EcoT38I GRGCYC 1 cut(s) 495
ErhI CCWWGG 1 cut(s) 391
FaeI CATG 2 cut(s) 241, 395
FaiI YATR 4 cut(s) 239, 384, 393, 574
FaqI GGGAC 2 cut(s) 55, 209
FatI CATG 2 cut(s) 237, 391
FauI CCCGC 1 cut(s) 67
Fnu4HI GCNGC 3 cut(s) 270, 319, 602
FokI GGATG 2 cut(s) 41, 65
FriOI GRGCYC 1 cut(s) 495
Fsp4HI GCNGC 3 cut(s) 270, 319, 602
FspBI CTAG 1 cut(s) 467
GlaI GCGC 1 cut(s) 130
GluI GCNGC 3 cut(s) 270, 319, 602
GsuI CTGGAG 1 cut(s) 193
HaeIII GGCC 4 cut(s) 5, 272, 389, 455
HapII CCGG 3 cut(s) 186, 243, 250
HgaI GACGC 3 cut(s) 191, 205, 341
HhaI GCGC 1 cut(s) 131
Hin1I GRCGYC 2 cut(s) 183, 333
Hin1II CATG 2 cut(s) 241, 395
Hin6I GCGC 1 cut(s) 129
HinP1I GCGC 1 cut(s) 129
HincII GTYRAC 1 cut(s) 525
HindII GTYRAC 1 cut(s) 525
HinfI GANTC 4 cut(s) 222, 263, 358, 478
HpaII CCGG 3 cut(s) 186, 243, 250
HphI GGTGA 3 cut(s) 43, 319, 571
Hpy166II GTNNAC 1 cut(s) 525
Hpy188I TCNGA 5 cut(s) 112, 221, 262, 401, 546
Hpy188III TCNNGA 2 cut(s) 172, 511
Hpy8I GTNNAC 1 cut(s) 525
Hpy99I CGWCG 5 cut(s) 137, 173, 185, 221, 326
HpyAV CCTTC 1 cut(s) 32
HpyCH4III ACNGT 3 cut(s) 501, 559, 587
HpyF10VI GCNNNNNNNGC 4 cut(s) 126, 275, 324, 467
HpyF3I CTNAG 2 cut(s) 450, 608
Hsp92I GRCGYC 2 cut(s) 183, 333
Hsp92II CATG 2 cut(s) 241, 395
HspAI GCGC 1 cut(s) 129
Kzo9I GATC 1 cut(s) 401
LmnI GCTCC 4 cut(s) 129, 251, 498, 534
Lsp1109I GCAGC 1 cut(s) 588
MaeI CTAG 1 cut(s) 467
MaeIII GTNAC 4 cut(s) 49, 406, 581, 587
MalI GATC 1 cut(s) 403
MboI GATC 1 cut(s) 401
MboII GAAGA 1 cut(s) 136
MhlI GDGCHC 1 cut(s) 495
MluCI AATT 2 cut(s) 280, 539
MlyI GAGTC 2 cut(s) 257, 352
MmeI TCCRAC 4 cut(s) 199, 285, 393, 520
MspA1I CMGCKG 1 cut(s) 156
MspI CCGG 3 cut(s) 186, 243, 250
MspR9I CCNGG 5 cut(s) 193, 211, 230, 250, 337
Mva1269I GAATGC 1 cut(s) 201
MvaI CCWGG 4 cut(s) 193, 211, 230, 337
MvnI CGCG 1 cut(s) 129
MwoI GCNNNNNNNGC 4 cut(s) 126, 275, 324, 467
NciI CCSGG 1 cut(s) 250
NcoI CCATGG 1 cut(s) 391
NdeII GATC 1 cut(s) 401
NlaIII CATG 2 cut(s) 241, 395
NlaIV GGNNCC 4 cut(s) 190, 247, 456, 494
NmeAIII GCCGAG 2 cut(s) 245, 294
NmuCI GTSAC 3 cut(s) 49, 406, 587
PcsI WCGNNNNNNNCGW 1 cut(s) 177
PctI GAATGC 1 cut(s) 201
PfeI GAWTC 2 cut(s) 222, 478
PflMI CCANNNNNTGG 1 cut(s) 502
PfoI TCCNGGA 1 cut(s) 228
PkrI GCNGC 3 cut(s) 271, 320, 603
PleI GAGTC 2 cut(s) 257, 352
PpsI GAGTC 2 cut(s) 257, 352
Psp6I CCWGG 4 cut(s) 191, 209, 228, 335
PspGI CCWGG 4 cut(s) 191, 209, 228, 335
PspN4I GGNNCC 4 cut(s) 190, 247, 456, 494
PspPI GGNCC 3 cut(s) 115, 388, 454
PstNI CAGNNNCTG 1 cut(s) 591
PvuII CAGCTG 1 cut(s) 156
RsaI GTAC 3 cut(s) 254, 380, 485
RsaNI GTAC 3 cut(s) 253, 379, 484
SatI GCNGC 3 cut(s) 270, 319, 602
Sau3AI GATC 1 cut(s) 401
Sau96I GGNCC 3 cut(s) 115, 388, 454
SchI GAGTC 2 cut(s) 257, 352
ScrFI CCNGG 5 cut(s) 193, 211, 230, 250, 337
SduI GDGCHC 1 cut(s) 495
SetI ASST 9 cut(s) 126, 144, 158, 194, 215, 315, 570, 583, 614
SinI GGWCC 1 cut(s) 115
Sse9I AATT 2 cut(s) 280, 539
SsiI CCGC 8 cut(s) 60, 118, 127, 160, 269, 305, 318, 532
SspMI CTAG 1 cut(s) 467
StyD4I CCNGG 5 cut(s) 191, 209, 228, 248, 335
StyI CCWWGG 1 cut(s) 391
TaaI ACNGT 3 cut(s) 501, 559, 587
TaqI TCGA 4 cut(s) 171, 345, 351, 414
TaqII GACCGA 1 cut(s) 287
TasI AATT 2 cut(s) 280, 539
TatI WGTACW 1 cut(s) 483
TauI GCSGC 2 cut(s) 272, 321
TfiI GAWTC 2 cut(s) 222, 478
TscAI CASTG 2 cut(s) 411, 592
TseFI GTSAC 3 cut(s) 49, 406, 587
TseI GCWGC 1 cut(s) 601
Tsp45I GTSAC 3 cut(s) 49, 406, 587
TspDTI ATGAA 1 cut(s) 432
TspGWI ACGGA 2 cut(s) 7, 157
TspRI CASTG 2 cut(s) 411, 592
Van91I CCANNNNNTGG 1 cut(s) 502
VpaK11BI GGWCC 1 cut(s) 115
XapI RAATTY 1 cut(s) 539
XspI CTAG 1 cut(s) 467
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.