Rw2G006230

acid phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0012044
Physical Location & Seq
Reverse (-)
6029784 .. 6032483
2700 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G006230.1

Sequence Viewer

Length: 786 bp
ATGGCCTCCTCCTCCTCCGTCCTTCTCCTCCTCCTCATCGTCCTCGTCACCATCCCCGCCTCCCTGTCCCACACCATCCTCCAAATCCCGCCGAACAGACACGCCTCCGAGGACCGCAAGCTCCGCGCTGACGACAACCTCTTCTGCGACAGCTGGAGGTTCTCCGTCGAGACCAACGACGCCGGAACCTGGGACAGCATTCCCTCCAGGTGCGTCGGATTCGTCCAGGACTACATGACCGGCTCCCGCTACGCCTCCGACTCGGCGGCCGTTGCTAATTTCTCGCTGGCGTTCGGTCAGGCGGTGAAGCTCGGCGGCGACGGCAAGGACGCCTGGGTGTTCGATATCGATGAGACTCTGCTGTCCAACTTGCCGTACTATGAGGCCCATGGGTTCGGATCAGTGACATTCGATGAAGAAGCTTTTGATGAGTGGGTGGATTTGGCTGAGGCCCCTGCTATCCTAGCAAGTTTGAATCTGTACAAGGGGCTCCAACGGTTGGGTTTCAAGATTTTCCTGTTGACTGGGCGGAGCGAATTTCAGAGAAATGCCACTGTGAAAAACCTCCTATATTCAGGTTACAGTGACTGGGAGAGGCTGCTACTGAGGGGACCTTCAGATAAAGGAACACTCGCGACTGAATACAAATCCAAGAAGAGGGCAGAACTGATAACCGAAGGTTATCGACTTCATGGGAGCTCGGGAGATCAATGGAGTGACTTGTCGGGGTTTGCAGTTGCCCGACGATCCTTTAAACTTCCAAACCCAATGTATTATATTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acid_phosphat_B

Protein Analysis

261

Amino Acids

29.02

Weight (kDa)

5.29

Isoelectric Point (pI)

34.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acid_phosphat_B PF03767 44 - 260 4.1e-77 HAD superfamily, subfamily IIIB (Acid phosphatase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012044)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G29260 AT4G29270
fragaria_vesca FvH4_1g06500
malus_domestica MD02G1068300.v1.1
prunus_persica Prupe.7G217300_v2.0.a1
pyrus_communis pycom02g05410 pycom08g17150 pycom15g17740
rosa_chinensis RchiOBHm_Chr2g0092251
rosa_laevigata RLG00000016290
rosa_multiflora Rmu_sc0000524.1_g000032 Rmu_sc0030540.1_g000001
rosa_roxburghii Rroxscaffold_2G00149330
rosa_rugosa Rorug02G0024100
rosa_samantha Rh2AG069900 Rh2BG069400 Rh2CG070600 Rh2DG068400
rosa_wichuraiana Rw2G006230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 361
AccB7I CCANNNNNTGG 1 cut(s) 499
AccII CGCG 2 cut(s) 126, 635
AciI CCGC 9 cut(s) 57, 89, 115, 124, 247, 266, 302, 315, 529
AclWI GGATC 2 cut(s) 406, 741
AcoI YGGCCR 1 cut(s) 267
AcsI RAATTY 1 cut(s) 536
AcuI CTGAAG 1 cut(s) 600
AcyI GRCGYC 2 cut(s) 180, 330
AfaI GTAC 2 cut(s) 377, 482
AfiI CCNNNNNNNGG 3 cut(s) 189, 499, 657
AgsI TTSAA 2 cut(s) 475, 508
AjnI CCWGG 4 cut(s) 188, 206, 225, 332
AluBI AGCT 5 cut(s) 121, 153, 310, 422, 699
AluI AGCT 5 cut(s) 121, 153, 310, 422, 699
Alw21I GWGCWC 1 cut(s) 701
Alw26I GTCTC 2 cut(s) 164, 347
AlwI GGATC 2 cut(s) 406, 741
AlwNI CAGNNNCTG 1 cut(s) 588
Ama87I CYCGRG 1 cut(s) 700
AoxI GGCC 4 cut(s) 3, 267, 384, 450
ApeKI GCWGC 1 cut(s) 598
ApoI RAATTY 1 cut(s) 536
AspLEI GCGC 1 cut(s) 128
AspS9I GGNCC 4 cut(s) 112, 385, 451, 611
AsuHPI GGTGA 2 cut(s) 40, 316
AvaI CYCGRG 1 cut(s) 700
AvaII GGWCC 2 cut(s) 112, 611
BanII GRGCYC 2 cut(s) 492, 701
Bbv12I GWGCWC 1 cut(s) 701
BbvCI CCTCAGC 1 cut(s) 447
BbvI GCAGC 1 cut(s) 585
BccI CCATC 2 cut(s) 59, 83
BceAI ACGGC 3 cut(s) 254, 337, 358
BciT130I CCWGG 4 cut(s) 190, 208, 227, 334
BcoDI GTCTC 2 cut(s) 164, 347
BfaI CTAG 1 cut(s) 464
BisI GCNGC 3 cut(s) 267, 316, 599
BlsI GCNGC 3 cut(s) 268, 317, 600
Bme1390I CCNGG 4 cut(s) 190, 208, 227, 334
Bme18I GGWCC 2 cut(s) 112, 611
BmeT110I CYCGRG 1 cut(s) 700
BmgT120I GGNCC 4 cut(s) 112, 385, 451, 611
BmiI GGNNCC 5 cut(s) 187, 244, 453, 491, 612
BmrFI CCNGG 4 cut(s) 190, 208, 227, 334
BmrI ACTGGG 2 cut(s) 534, 598
BmuI ACTGGG 2 cut(s) 534, 598
BpmI CTGGAG 2 cut(s) 175, 190
Bpu10I CCTNAGC 1 cut(s) 447
Bsa29I ATCGAT 1 cut(s) 348
BsaHI GRCGYC 2 cut(s) 180, 330
BsaI GGTCTC 1 cut(s) 164
BsaJI CCNNGG 4 cut(s) 108, 189, 333, 388
Bsc4I CCNNNNNNNGG 3 cut(s) 189, 499, 657
Bse118I RCCGGY 1 cut(s) 239
Bse1I ACTGG 2 cut(s) 529, 593
BseBI CCWGG 4 cut(s) 190, 208, 227, 334
BseCI ATCGAT 1 cut(s) 348
BseDI CCNNGG 4 cut(s) 108, 189, 333, 388
BseGI GGATG 2 cut(s) 51, 75
BseLI CCNNNNNNNGG 3 cut(s) 189, 499, 657
BseMII CTCAG 2 cut(s) 438, 596
BseNI ACTGG 2 cut(s) 529, 593
BseRI GAGGAG 4 cut(s) 4, 17, 20, 23
BseX3I CGGCCG 1 cut(s) 267
BseXI GCAGC 1 cut(s) 585
Bsh1236I CGCG 2 cut(s) 126, 635
Bsh1285I CGRYCG 1 cut(s) 270
BshFI GGCC 4 cut(s) 5, 269, 386, 452
BshVI ATCGAT 1 cut(s) 348
BsiEI CGRYCG 1 cut(s) 270
BsiHKAI GWGCWC 1 cut(s) 701
BsiHKCI CYCGRG 1 cut(s) 700
BsiSI CCGG 2 cut(s) 183, 240
BslFI GGGAC 3 cut(s) 52, 206, 624
BslI CCNNNNNNNGG 3 cut(s) 189, 499, 657
BsmAI GTCTC 2 cut(s) 164, 347
BsmFI GGGAC 3 cut(s) 52, 206, 624
BsmI GAATGC 1 cut(s) 198
BsnI GGCC 4 cut(s) 5, 269, 386, 452
Bso31I GGTCTC 1 cut(s) 164
BsoBI CYCGRG 1 cut(s) 700
Bsp1286I GDGCHC 2 cut(s) 492, 701
Bsp1407I TGTACA 1 cut(s) 480
Bsp143I GATC 3 cut(s) 398, 706, 746
Bsp19I CCATGG 1 cut(s) 388
Bsp68I TCGCGA 1 cut(s) 635
BspACI CCGC 9 cut(s) 57, 89, 115, 124, 247, 266, 302, 315, 529
BspANI GGCC 4 cut(s) 5, 269, 386, 452
BspCNI CTCAG 2 cut(s) 439, 597
BspDI ATCGAT 1 cut(s) 348
BspFNI CGCG 2 cut(s) 126, 635
BspLI GGNNCC 5 cut(s) 187, 244, 453, 491, 612
BspPI GGATC 2 cut(s) 406, 741
BspTNI GGTCTC 1 cut(s) 164
BsrFI RCCGGY 1 cut(s) 239
BsrGI TGTACA 1 cut(s) 480
BsrI ACTGG 2 cut(s) 529, 593
BssAI RCCGGY 1 cut(s) 239
BssECI CCNNGG 4 cut(s) 108, 189, 333, 388
BssMI GATC 3 cut(s) 398, 706, 746
BssNI GRCGYC 2 cut(s) 180, 330
BssT1I CCWWGG 1 cut(s) 388
Bst2UI CCWGG 4 cut(s) 190, 208, 227, 334
Bst4CI ACNGT 3 cut(s) 498, 556, 584
Bst6I CTCTTC 2 cut(s) 146, 650
BstACI GRCGYC 2 cut(s) 180, 330
BstAUI TGTACA 1 cut(s) 480
BstC8I GCNNGC 2 cut(s) 119, 288
BstDEI CTNAG 2 cut(s) 447, 605
BstDSI CCRYGG 1 cut(s) 388
BstF5I GGATG 2 cut(s) 51, 75
BstFNI CGCG 2 cut(s) 126, 635
BstHHI GCGC 1 cut(s) 128
BstKTI GATC 3 cut(s) 401, 709, 749
BstMAI GTCTC 2 cut(s) 164, 347
BstMBI GATC 3 cut(s) 398, 706, 746
BstMCI CGRYCG 1 cut(s) 270
BstMWI GCNNNNNNNGC 4 cut(s) 123, 272, 321, 464
BstNI CCWGG 4 cut(s) 190, 208, 227, 334
BstSCI CCNGG 4 cut(s) 188, 206, 225, 332
BstUI CGCG 2 cut(s) 126, 635
BstV1I GCAGC 1 cut(s) 585
BstZI CGGCCG 1 cut(s) 267
Bsu15I ATCGAT 1 cut(s) 348
BsuRI GGCC 4 cut(s) 5, 269, 386, 452
BsuTUI ATCGAT 1 cut(s) 348
BtgI CCRYGG 1 cut(s) 388
BtsCI GGATG 2 cut(s) 51, 75
BtsIMutI CAGTG 3 cut(s) 408, 552, 589
BtuMI TCGCGA 1 cut(s) 635
Cac8I GCNNGC 2 cut(s) 119, 288
CaiI CAGNNNCTG 1 cut(s) 588
CfoI GCGC 1 cut(s) 128
Cfr10I RCCGGY 1 cut(s) 239
Cfr13I GGNCC 4 cut(s) 112, 385, 451, 611
ClaI ATCGAT 1 cut(s) 348
CseI GACGC 3 cut(s) 188, 202, 338
Csp6I GTAC 2 cut(s) 376, 481
CviAII CATG 3 cut(s) 235, 389, 692
CviQI GTAC 2 cut(s) 376, 481
DdeI CTNAG 2 cut(s) 447, 605
DpnI GATC 3 cut(s) 400, 708, 748
DpnII GATC 3 cut(s) 398, 706, 746
DraI TTTAAA 1 cut(s) 754
DrdI GACNNNNNNGTC 1 cut(s) 361
DseDI GACNNNNNNGTC 1 cut(s) 361
EaeI YGGCCR 1 cut(s) 267
EagI CGGCCG 1 cut(s) 267
Eam1104I CTCTTC 2 cut(s) 146, 650
EarI CTCTTC 2 cut(s) 146, 650
EciI GGCGGA 1 cut(s) 544
Ecl136II GAGCTC 1 cut(s) 699
EclXI CGGCCG 1 cut(s) 267
Eco130I CCWWGG 1 cut(s) 388
Eco24I GRGCYC 2 cut(s) 492, 701
Eco31I GGTCTC 1 cut(s) 164
Eco32I GATATC 1 cut(s) 346
Eco47I GGWCC 2 cut(s) 112, 611
Eco52I CGGCCG 1 cut(s) 267
Eco53kI GAGCTC 1 cut(s) 699
Eco57I CTGAAG 1 cut(s) 600
Eco88I CYCGRG 1 cut(s) 700
EcoICRI GAGCTC 1 cut(s) 699
EcoO109I RGGNCCY 2 cut(s) 451, 611
EcoRII CCWGG 4 cut(s) 188, 206, 225, 332
EcoRV GATATC 1 cut(s) 346
EcoT14I CCWWGG 1 cut(s) 388
EcoT38I GRGCYC 2 cut(s) 492, 701
ErhI CCWWGG 1 cut(s) 388
FaeI CATG 3 cut(s) 238, 392, 695
FaiI YATR 7 cut(s) 236, 381, 390, 571, 693, 777, 784
FaqI GGGAC 3 cut(s) 52, 206, 624
FatI CATG 3 cut(s) 234, 388, 691
FauI CCCGC 3 cut(s) 64, 96, 254
Fnu4HI GCNGC 3 cut(s) 267, 316, 599
FokI GGATG 2 cut(s) 38, 62
FriOI GRGCYC 2 cut(s) 492, 701
Fsp4HI GCNGC 3 cut(s) 267, 316, 599
FspBI CTAG 1 cut(s) 464
GlaI GCGC 1 cut(s) 127
GluI GCNGC 3 cut(s) 267, 316, 599
GsuI CTGGAG 2 cut(s) 175, 190
HaeIII GGCC 4 cut(s) 5, 269, 386, 452
HapII CCGG 2 cut(s) 183, 240
HgaI GACGC 3 cut(s) 188, 202, 338
HhaI GCGC 1 cut(s) 128
Hin1I GRCGYC 2 cut(s) 180, 330
Hin1II CATG 3 cut(s) 238, 392, 695
Hin6I GCGC 1 cut(s) 126
HinP1I GCGC 1 cut(s) 126
HincII GTYRAC 1 cut(s) 522
HindII GTYRAC 1 cut(s) 522
HindIII AAGCTT 1 cut(s) 420
HinfI GANTC 4 cut(s) 219, 260, 355, 475
HpaII CCGG 2 cut(s) 183, 240
HphI GGTGA 2 cut(s) 40, 316
Hpy166II GTNNAC 1 cut(s) 522
Hpy188I TCNGA 6 cut(s) 109, 218, 259, 398, 543, 619
Hpy188III TCNNGA 4 cut(s) 169, 508, 634, 702
Hpy8I GTNNAC 1 cut(s) 522
Hpy99I CGWCG 5 cut(s) 170, 182, 218, 323, 747
HpyAV CCTTC 3 cut(s) 32, 624, 671
HpyCH4III ACNGT 3 cut(s) 498, 556, 584
HpyCH4V TGCA 2 cut(s) 734, 782
HpyF10VI GCNNNNNNNGC 4 cut(s) 123, 272, 321, 464
HpyF3I CTNAG 2 cut(s) 447, 605
Hsp92I GRCGYC 2 cut(s) 180, 330
Hsp92II CATG 3 cut(s) 238, 392, 695
HspAI GCGC 1 cut(s) 126
Kzo9I GATC 3 cut(s) 398, 706, 746
LmnI GCTCC 5 cut(s) 126, 248, 495, 531, 696
Lsp1109I GCAGC 1 cut(s) 585
MaeI CTAG 1 cut(s) 464
MaeIII GTNAC 5 cut(s) 46, 403, 578, 584, 716
MalI GATC 3 cut(s) 400, 708, 748
MboI GATC 3 cut(s) 398, 706, 746
MboII GAAGA 3 cut(s) 133, 428, 667
MhlI GDGCHC 2 cut(s) 492, 701
MluCI AATT 2 cut(s) 277, 536
MlyI GAGTC 2 cut(s) 254, 349
MmeI TCCRAC 4 cut(s) 196, 282, 390, 517
MseI TTAA 1 cut(s) 753
MspA1I CMGCKG 1 cut(s) 153
MspI CCGG 2 cut(s) 183, 240
MspR9I CCNGG 4 cut(s) 190, 208, 227, 334
Mva1269I GAATGC 1 cut(s) 198
MvaI CCWGG 4 cut(s) 190, 208, 227, 334
MvnI CGCG 2 cut(s) 126, 635
MwoI GCNNNNNNNGC 4 cut(s) 123, 272, 321, 464
NcoI CCATGG 1 cut(s) 388
NdeII GATC 3 cut(s) 398, 706, 746
NlaIII CATG 3 cut(s) 238, 392, 695
NlaIV GGNNCC 5 cut(s) 187, 244, 453, 491, 612
NmeAIII GCCGAG 2 cut(s) 242, 291
NmuCI GTSAC 4 cut(s) 46, 403, 584, 716
NruI TCGCGA 1 cut(s) 635
PcsI WCGNNNNNNNCGW 1 cut(s) 174
PctI GAATGC 1 cut(s) 198
PfeI GAWTC 2 cut(s) 219, 475
PflMI CCANNNNNTGG 1 cut(s) 499
PfoI TCCNGGA 1 cut(s) 225
PkrI GCNGC 3 cut(s) 268, 317, 600
PleI GAGTC 2 cut(s) 254, 349
PpsI GAGTC 2 cut(s) 254, 349
PpuMI RGGWCCY 1 cut(s) 611
Psp124BI GAGCTC 1 cut(s) 701
Psp5II RGGWCCY 1 cut(s) 611
Psp6I CCWGG 4 cut(s) 188, 206, 225, 332
PspGI CCWGG 4 cut(s) 188, 206, 225, 332
PspN4I GGNNCC 5 cut(s) 187, 244, 453, 491, 612
PspPI GGNCC 4 cut(s) 112, 385, 451, 611
PspPPI RGGWCCY 1 cut(s) 611
PstNI CAGNNNCTG 1 cut(s) 588
PvuII CAGCTG 1 cut(s) 153
RruI TCGCGA 1 cut(s) 635
RsaI GTAC 2 cut(s) 377, 482
RsaNI GTAC 2 cut(s) 376, 481
SacI GAGCTC 1 cut(s) 701
SaqAI TTAA 1 cut(s) 753
SatI GCNGC 3 cut(s) 267, 316, 599
Sau3AI GATC 3 cut(s) 398, 706, 746
Sau96I GGNCC 4 cut(s) 112, 385, 451, 611
SchI GAGTC 2 cut(s) 254, 349
ScrFI CCNGG 4 cut(s) 190, 208, 227, 334
SduI GDGCHC 2 cut(s) 492, 701
SinI GGWCC 2 cut(s) 112, 611
Sse9I AATT 2 cut(s) 277, 536
SsiI CCGC 9 cut(s) 57, 89, 115, 124, 247, 266, 302, 315, 529
SspMI CTAG 1 cut(s) 464
SstI GAGCTC 1 cut(s) 701
StyD4I CCNGG 4 cut(s) 188, 206, 225, 332
StyI CCWWGG 1 cut(s) 388
TaaI ACNGT 3 cut(s) 498, 556, 584
TaqI TCGA 5 cut(s) 168, 342, 348, 411, 685
TaqII GACCGA 1 cut(s) 284
TasI AATT 2 cut(s) 277, 536
TatI WGTACW 1 cut(s) 480
TauI GCSGC 2 cut(s) 269, 318
TfiI GAWTC 2 cut(s) 219, 475
Tru1I TTAA 1 cut(s) 753
Tru9I TTAA 1 cut(s) 753
TscAI CASTG 3 cut(s) 408, 559, 589
TseFI GTSAC 4 cut(s) 46, 403, 584, 716
TseI GCWGC 1 cut(s) 598
Tsp45I GTSAC 4 cut(s) 46, 403, 584, 716
TspDTI ATGAA 2 cut(s) 429, 680
TspGWI ACGGA 2 cut(s) 7, 154
TspRI CASTG 3 cut(s) 408, 559, 589
Van91I CCANNNNNTGG 1 cut(s) 499
VpaK11BI GGWCC 2 cut(s) 112, 611
XapI RAATTY 1 cut(s) 536
XspI CTAG 1 cut(s) 464
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.