AT4G29270

acid phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0012044
Physical Location & Seq
Reverse (-)
14423627 .. 14424898
1272 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G29270.1

Sequence Viewer

Length: 771 bp
ATGACTTTTTCTCGTAGCAGCTCGATTACGTTCTTCATCGTTGCTTTATTCACCGTCTTAATTAATCCGGCGATCTCTTCTCGCGCCGCGTCCTTCATCAAGCTGCCTCGGTCTTCCATCGCTTCATACTGCGAGAGTTGGAGATTAGCCGCTGAGACCAACAATGTTGGACCCTGGAAGGTGATTCCGTCCCAATGCGAAAACTATATTAAAAACTACATCAACGGAGGCCAGTTCGACAAAGACTACGATGTAGTCGCTAGTTACGCCATTGACTACGCTAAAACGGTCAAGGTTGGCGGAGACGGCAAGGACGCGTGGGTCTTTGACATCGATGAGACGCTTCTCTCCAATATTGAGTACTACAAGGCTAATGGTTACGGGTCTGAACCGTACGATAGTATTAAATACAATGAGGTGGTGGAAAAAGGAAAAGACCCAGGTTATGATGCGAGCTTGAGGCTCTACAAAGCTCTCAAGAAACTTGGTTTCACTATCATTTTACTAACTGGCCGAGACGAAGGTCATAGAAGTGTCACCGAGAAAAATCTTCGGGATGCCGGTTATTTCGGTTGGAACCGACTCCTCTTGAGGGGTCAAAATGATCAAGGGAAAACAGCAACACAATACAAATCAGAGCAGCGATCACAAGTTGTAAAAGAAGGCTACACAATCCATGGTAATACTGGAGATCAATGGAGTGACTTGCTAGGTTTTGCCGTGGCTTCTCGTTCTTTCAAAGTCCCAAATCCCATGTACTATGTTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acid_phosphat_B

Protein Analysis

256

Amino Acids

28.75

Weight (kDa)

8.61

Isoelectric Point (pI)

35.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acid_phosphat_B PF03767 31 - 255 2.1e-88 HAD superfamily, subfamily IIIB (Acid phosphatase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012044)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G29260 AT4G29270
fragaria_vesca FvH4_1g06500
malus_domestica MD02G1068300.v1.1
prunus_persica Prupe.7G217300_v2.0.a1
pyrus_communis pycom02g05410 pycom08g17150 pycom15g17740
rosa_chinensis RchiOBHm_Chr2g0092251
rosa_laevigata RLG00000016290
rosa_multiflora Rmu_sc0000524.1_g000032 Rmu_sc0030540.1_g000001
rosa_roxburghii Rroxscaffold_2G00149330
rosa_rugosa Rorug02G0024100
rosa_samantha Rh2AG069900 Rh2BG069400 Rh2CG070600 Rh2DG068400
rosa_wichuraiana Rw2G006230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 320
AccII CGCG 3 cut(s) 84, 89, 317
AciI CCGC 3 cut(s) 87, 150, 300
AcoI YGGCCR 1 cut(s) 511
AfaI GTAC 3 cut(s) 362, 395, 758
AfiI CCNNNNNNNGG 1 cut(s) 592
AflIII ACRYGT 1 cut(s) 315
AgsI TTSAA 1 cut(s) 739
AjnI CCWGG 2 cut(s) 173, 439
AluBI AGCT 4 cut(s) 21, 103, 456, 473
AluI AGCT 4 cut(s) 21, 103, 456, 473
Alw26I GTCTC 4 cut(s) 149, 297, 332, 510
AoxI GGCC 2 cut(s) 229, 511
ApeKI GCWGC 3 cut(s) 18, 103, 640
AseI ATTAAT 1 cut(s) 63
AspLEI GCGC 1 cut(s) 86
AspS9I GGNCC 1 cut(s) 170
AsuHPI GGTGA 3 cut(s) 43, 193, 529
AvaII GGWCC 1 cut(s) 170
BbsI GAAGAC 1 cut(s) 105
BbvI GCAGC 3 cut(s) 30, 90, 652
BccI CCATC 1 cut(s) 125
BceAI ACGGC 2 cut(s) 322, 704
BciT130I CCWGG 2 cut(s) 175, 441
BclI TGATCA 1 cut(s) 604
BcoDI GTCTC 4 cut(s) 149, 297, 332, 510
BfaI CTAG 2 cut(s) 261, 710
BisI GCNGC 5 cut(s) 19, 87, 104, 150, 641
BlsI GCNGC 5 cut(s) 20, 88, 105, 151, 642
BmcAI AGTACT 1 cut(s) 362
Bme1390I CCNGG 2 cut(s) 175, 441
Bme18I GGWCC 1 cut(s) 170
BmgT120I GGNCC 1 cut(s) 170
BmiI GGNNCC 2 cut(s) 172, 578
BmrFI CCNGG 2 cut(s) 175, 441
BmsI GCATC 2 cut(s) 439, 547
BoxI GACNNNNGTC 1 cut(s) 522
BpiI GAAGAC 1 cut(s) 105
BpmI CTGGAG 1 cut(s) 708
BpuEI CTTGAG 3 cut(s) 461, 478, 610
Bsa29I ATCGAT 1 cut(s) 333
BsaI GGTCTC 1 cut(s) 149
BsaJI CCNNGG 5 cut(s) 107, 173, 439, 676, 720
Bsc4I CCNNNNNNNGG 1 cut(s) 592
Bse118I RCCGGY 1 cut(s) 560
Bse1I ACTGG 3 cut(s) 232, 514, 691
BseBI CCWGG 2 cut(s) 175, 441
BseCI ATCGAT 1 cut(s) 333
BseDI CCNNGG 5 cut(s) 107, 173, 439, 676, 720
BseGI GGATG 1 cut(s) 562
BseLI CCNNNNNNNGG 1 cut(s) 592
BseMII CTCAG 1 cut(s) 144
BseNI ACTGG 3 cut(s) 232, 514, 691
BseRI GAGGAG 1 cut(s) 575
BseXI GCAGC 3 cut(s) 30, 90, 652
Bsh1236I CGCG 3 cut(s) 84, 89, 317
BshFI GGCC 2 cut(s) 231, 513
BshVI ATCGAT 1 cut(s) 333
BsiSI CCGG 2 cut(s) 68, 561
BsiWI CGTACG 1 cut(s) 393
BslFI GGGAC 2 cut(s) 175, 728
BslI CCNNNNNNNGG 1 cut(s) 592
BsmAI GTCTC 4 cut(s) 149, 297, 332, 510
BsmBI CGTCTC 3 cut(s) 297, 332, 510
BsmFI GGGAC 2 cut(s) 175, 728
BsnI GGCC 2 cut(s) 231, 513
Bso31I GGTCTC 1 cut(s) 149
Bsp143I GATC 4 cut(s) 72, 604, 644, 691
Bsp19I CCATGG 1 cut(s) 676
BspACI CCGC 3 cut(s) 87, 150, 300
BspANI GGCC 2 cut(s) 231, 513
BspCNI CTCAG 1 cut(s) 145
BspDI ATCGAT 1 cut(s) 333
BspFNI CGCG 3 cut(s) 84, 89, 317
BspLI GGNNCC 2 cut(s) 172, 578
BspTNI GGTCTC 1 cut(s) 149
BsrFI RCCGGY 1 cut(s) 560
BsrI ACTGG 3 cut(s) 232, 514, 691
BssAI RCCGGY 1 cut(s) 560
BssECI CCNNGG 5 cut(s) 107, 173, 439, 676, 720
BssMI GATC 4 cut(s) 72, 604, 644, 691
BssT1I CCWWGG 1 cut(s) 676
Bst2UI CCWGG 2 cut(s) 175, 441
Bst4CI ACNGT 3 cut(s) 55, 289, 393
Bst6I CTCTTC 1 cut(s) 82
BstC8I GCNNGC 1 cut(s) 454
BstDEI CTNAG 1 cut(s) 153
BstDSI CCRYGG 2 cut(s) 676, 720
BstF5I GGATG 1 cut(s) 562
BstFNI CGCG 3 cut(s) 84, 89, 317
BstHHI GCGC 1 cut(s) 86
BstKTI GATC 4 cut(s) 75, 607, 647, 694
BstMAI GTCTC 4 cut(s) 149, 297, 332, 510
BstMBI GATC 4 cut(s) 72, 604, 644, 691
BstMWI GCNNNNNNNGC 2 cut(s) 266, 306
BstNI CCWGG 2 cut(s) 175, 441
BstPAI GACNNNNGTC 1 cut(s) 522
BstSCI CCNGG 2 cut(s) 173, 439
BstUI CGCG 3 cut(s) 84, 89, 317
BstV1I GCAGC 3 cut(s) 30, 90, 652
BstV2I GAAGAC 1 cut(s) 105
Bsu15I ATCGAT 1 cut(s) 333
BsuRI GGCC 2 cut(s) 231, 513
BsuTUI ATCGAT 1 cut(s) 333
BtgI CCRYGG 2 cut(s) 676, 720
BtgZI GCGATG 1 cut(s) 103
BtsCI GGATG 1 cut(s) 562
Cac8I GCNNGC 1 cut(s) 454
CfoI GCGC 1 cut(s) 86
Cfr10I RCCGGY 1 cut(s) 560
Cfr13I GGNCC 1 cut(s) 170
ClaI ATCGAT 1 cut(s) 333
CseI GACGC 3 cut(s) 78, 323, 349
Csp6I GTAC 3 cut(s) 361, 394, 757
CviAII CATG 2 cut(s) 677, 754
CviQI GTAC 3 cut(s) 361, 394, 757
DdeI CTNAG 1 cut(s) 153
DpnI GATC 4 cut(s) 74, 606, 646, 693
DpnII GATC 4 cut(s) 72, 604, 644, 691
DrdI GACNNNNNNGTC 1 cut(s) 320
DseDI GACNNNNNNGTC 1 cut(s) 320
EaeI YGGCCR 1 cut(s) 511
Eam1104I CTCTTC 1 cut(s) 82
EarI CTCTTC 1 cut(s) 82
EciI GGCGGA 1 cut(s) 315
Eco130I CCWWGG 1 cut(s) 676
Eco31I GGTCTC 1 cut(s) 149
Eco47I GGWCC 1 cut(s) 170
EcoRII CCWGG 2 cut(s) 173, 439
EcoT14I CCWWGG 1 cut(s) 676
ErhI CCWWGG 1 cut(s) 676
Esp3I CGTCTC 3 cut(s) 297, 332, 510
FaeI CATG 2 cut(s) 680, 757
FaiI YATR 7 cut(s) 127, 207, 447, 528, 678, 755, 762
FaqI GGGAC 2 cut(s) 175, 728
FatI CATG 2 cut(s) 676, 753
FbaI TGATCA 1 cut(s) 604
Fnu4HI GCNGC 5 cut(s) 19, 87, 104, 150, 641
FokI GGATG 1 cut(s) 569
Fsp4HI GCNGC 5 cut(s) 19, 87, 104, 150, 641
FspBI CTAG 2 cut(s) 261, 710
GlaI GCGC 1 cut(s) 85
GluI GCNGC 5 cut(s) 19, 87, 104, 150, 641
GsuI CTGGAG 1 cut(s) 708
HaeIII GGCC 2 cut(s) 231, 513
HapII CCGG 2 cut(s) 68, 561
HgaI GACGC 3 cut(s) 78, 323, 349
HhaI GCGC 1 cut(s) 86
Hin1II CATG 2 cut(s) 680, 757
Hin6I GCGC 1 cut(s) 84
HinP1I GCGC 1 cut(s) 84
HinfI GANTC 2 cut(s) 184, 582
HpaII CCGG 2 cut(s) 68, 561
HphI GGTGA 3 cut(s) 43, 193, 529
Hpy188I TCNGA 2 cut(s) 388, 637
Hpy188III TCNNGA 3 cut(s) 478, 554, 589
HpyAV CCTTC 4 cut(s) 103, 172, 515, 656
HpyCH4III ACNGT 3 cut(s) 55, 289, 393
HpyCH4IV ACGT 1 cut(s) 29
HpyF10VI GCNNNNNNNGC 2 cut(s) 266, 306
HpyF3I CTNAG 1 cut(s) 153
HpySE526I ACGT 1 cut(s) 29
Hsp92II CATG 2 cut(s) 680, 757
HspAI GCGC 1 cut(s) 84
Ksp22I TGATCA 1 cut(s) 604
Kzo9I GATC 4 cut(s) 72, 604, 644, 691
LpnPI CCDG 9 cut(s) 81, 160, 187, 245, 426, 453, 495, 574, 672
Lsp1109I GCAGC 3 cut(s) 30, 90, 652
LweI GCATC 2 cut(s) 439, 547
MaeI CTAG 2 cut(s) 261, 710
MaeII ACGT 1 cut(s) 29
MaeIII GTNAC 4 cut(s) 263, 377, 535, 701
MalI GATC 4 cut(s) 74, 606, 646, 693
MboI GATC 4 cut(s) 72, 604, 644, 691
MboII GAAGA 4 cut(s) 25, 69, 105, 542
MluCI AATT 1 cut(s) 60
MluI ACGCGT 1 cut(s) 315
MlyI GAGTC 1 cut(s) 576
MmeI TCCRAC 3 cut(s) 119, 148, 554
MnlI CCTC 6 cut(s) 117, 221, 409, 453, 585, 596
MseI TTAA 4 cut(s) 59, 63, 210, 405
MslI CAYNNNNRTG 1 cut(s) 531
MspA1I CMGCKG 1 cut(s) 152
MspI CCGG 2 cut(s) 68, 561
MspR9I CCNGG 2 cut(s) 175, 441
MvaI CCWGG 2 cut(s) 175, 441
MvnI CGCG 3 cut(s) 84, 89, 317
MwoI GCNNNNNNNGC 2 cut(s) 266, 306
NcoI CCATGG 1 cut(s) 676
NdeII GATC 4 cut(s) 72, 604, 644, 691
NlaIII CATG 2 cut(s) 680, 757
NlaIV GGNNCC 2 cut(s) 172, 578
NmeAIII GCCGAG 1 cut(s) 539
NmuCI GTSAC 2 cut(s) 535, 701
PacI TTAATTAA 1 cut(s) 63
PfeI GAWTC 1 cut(s) 184
Pfl23II CGTACG 1 cut(s) 393
PkrI GCNGC 5 cut(s) 20, 88, 105, 151, 642
PleI GAGTC 1 cut(s) 576
PpsI GAGTC 1 cut(s) 576
PshAI GACNNNNGTC 1 cut(s) 522
PshBI ATTAAT 1 cut(s) 63
Psp6I CCWGG 2 cut(s) 173, 439
PspGI CCWGG 2 cut(s) 173, 439
PspLI CGTACG 1 cut(s) 393
PspN4I GGNNCC 2 cut(s) 172, 578
PspPI GGNCC 1 cut(s) 170
RsaI GTAC 3 cut(s) 362, 395, 758
RsaNI GTAC 3 cut(s) 361, 394, 757
RseI CAYNNNNRTG 1 cut(s) 531
SaqAI TTAA 4 cut(s) 59, 63, 210, 405
SatI GCNGC 5 cut(s) 19, 87, 104, 150, 641
Sau3AI GATC 4 cut(s) 72, 604, 644, 691
Sau96I GGNCC 1 cut(s) 170
ScaI AGTACT 1 cut(s) 362
SchI GAGTC 1 cut(s) 576
ScrFI CCNGG 2 cut(s) 175, 441
SfaNI GCATC 2 cut(s) 439, 547
SinI GGWCC 1 cut(s) 170
SmiMI CAYNNNNRTG 1 cut(s) 531
SmlI CTYRAG 3 cut(s) 457, 476, 589
SmoI CTYRAG 3 cut(s) 457, 476, 589
Sse9I AATT 1 cut(s) 60
SsiI CCGC 3 cut(s) 87, 150, 300
SspI AATATT 1 cut(s) 355
SspMI CTAG 2 cut(s) 261, 710
StyD4I CCNGG 2 cut(s) 173, 439
StyI CCWWGG 1 cut(s) 676
TaaI ACNGT 3 cut(s) 55, 289, 393
TaiI ACGT 1 cut(s) 32
TaqI TCGA 3 cut(s) 23, 237, 333
TaqII GACCGA 1 cut(s) 99
TasI AATT 1 cut(s) 60
TatI WGTACW 2 cut(s) 360, 756
TauI GCSGC 2 cut(s) 89, 152
TfiI GAWTC 1 cut(s) 184
Tru1I TTAA 4 cut(s) 59, 63, 210, 405
Tru9I TTAA 4 cut(s) 59, 63, 210, 405
TseFI GTSAC 2 cut(s) 535, 701
TseI GCWGC 3 cut(s) 18, 103, 640
Tsp45I GTSAC 2 cut(s) 535, 701
TspDTI ATGAA 3 cut(s) 25, 85, 114
TspGWI ACGGA 2 cut(s) 177, 240
VpaK11BI GGWCC 1 cut(s) 170
VspI ATTAAT 1 cut(s) 63
XcmI CCANNNNNNNNNTGG 1 cut(s) 683
XspI CTAG 2 cut(s) 261, 710
ZrmI AGTACT 1 cut(s) 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.